Wall clock time and date at job start Mon Mar 30 2020 07:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99887 * 2 1 4 4 H 1.08995 * 109.46919 * 329.99893 * 3 2 1 5 5 C 1.52994 * 109.47044 * 90.00369 * 3 2 1 6 6 C 1.53003 * 109.47553 * 59.99766 * 5 3 2 7 7 C 1.52995 * 109.46708 * 59.99915 * 6 5 3 8 8 C 1.52999 * 109.47417 * 299.99856 * 7 6 5 9 9 C 1.53002 * 109.46680 * 210.00264 * 3 2 1 10 10 H 1.09000 * 109.46635 * 180.02562 * 9 3 2 11 11 N 1.46898 * 109.47617 * 60.00171 * 9 3 2 12 12 C 1.46904 * 110.99746 * 56.03969 * 11 9 3 13 13 C 1.46894 * 111.00278 * 179.97438 * 11 9 3 14 14 C 1.52998 * 109.47366 * 174.84362 * 13 11 9 15 15 C 1.50703 * 115.54995 * 305.97940 * 14 13 11 16 16 H 1.08004 * 119.99702 * 144.34914 * 15 14 13 17 17 C 1.37872 * 119.99833 * 324.35340 * 15 14 13 18 18 N 1.31520 * 119.99989 * 4.55828 * 17 15 14 19 19 Si 1.86799 * 120.00041 * 184.56544 * 17 15 14 20 20 H 1.48500 * 109.47220 * 59.99579 * 19 17 15 21 21 H 1.48495 * 109.47358 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47086 * 299.99910 * 19 17 15 23 23 C 1.52997 * 117.50043 * 160.30452 * 14 13 11 24 24 C 1.53002 * 117.49664 * 91.64290 * 14 13 11 25 25 H 1.09000 * 109.47181 * 299.99941 * 1 2 3 26 26 H 1.09002 * 109.47347 * 59.99849 * 1 2 3 27 27 H 1.09004 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46946 * 299.99547 * 5 3 2 29 29 H 1.09000 * 109.47222 * 179.97438 * 5 3 2 30 30 H 1.08997 * 109.46981 * 179.97438 * 6 5 3 31 31 H 1.09000 * 109.47003 * 300.00314 * 6 5 3 32 32 H 1.09003 * 109.47738 * 60.00161 * 7 6 5 33 33 H 1.09005 * 109.47062 * 180.02562 * 7 6 5 34 34 H 1.09005 * 109.47276 * 179.97438 * 8 7 6 35 35 H 1.09000 * 109.47477 * 300.00326 * 8 7 6 36 36 H 1.08995 * 109.46805 * 55.09882 * 12 11 9 37 37 H 1.09000 * 109.46595 * 175.09608 * 12 11 9 38 38 H 1.08991 * 109.47347 * 295.09655 * 12 11 9 39 39 H 1.09002 * 109.46835 * 294.84567 * 13 11 9 40 40 H 1.08996 * 109.47402 * 54.84169 * 13 11 9 41 41 H 0.97006 * 119.99638 * 185.00728 * 18 17 15 42 42 H 1.08999 * 117.50160 * 0.02562 * 23 14 13 43 43 H 1.08997 * 117.49908 * 145.02298 * 23 14 13 44 44 H 1.08997 * 117.49858 * 214.97766 * 24 14 13 45 45 H 1.09001 * 117.50158 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2177 1.7713 1.4424 6 6 3.1515 0.7973 2.1637 7 6 4.5001 0.7552 1.4424 8 6 4.2926 0.2892 0.0000 9 6 3.3588 1.2632 -0.7213 10 1 3.8023 2.2589 -0.7209 11 7 3.1597 0.8159 -2.1063 12 6 2.1935 1.6755 -2.8033 13 6 4.4361 0.7637 -2.8314 14 6 4.2077 0.1735 -4.2244 15 6 3.5166 -1.1653 -4.2577 16 1 2.8262 -1.3969 -5.0554 17 6 3.7657 -2.0944 -3.2700 18 7 4.5359 -1.7806 -2.2512 19 14 3.0092 -3.7989 -3.3788 20 1 3.4692 -4.4661 -4.6232 21 1 3.4286 -4.6026 -2.2027 22 1 1.5289 -3.6832 -3.3975 23 6 5.2706 0.4466 -5.2904 24 6 3.9127 1.1493 -5.3653 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.2569 1.8014 1.9563 29 1 2.6614 2.7669 1.4425 30 1 3.2996 1.1295 3.1912 31 1 2.7082 -0.1985 2.1637 32 1 4.9435 1.7509 1.4424 33 1 5.1653 0.0609 1.9560 34 1 5.2534 0.2596 -0.5141 35 1 3.8493 -0.7066 -0.0001 36 1 2.5200 2.7135 -2.7413 37 1 2.1299 1.3764 -3.8496 38 1 1.2140 1.5741 -2.3363 39 1 4.8419 1.7709 -2.9256 40 1 5.1403 0.1382 -2.2829 41 1 4.7702 -2.4551 -1.5945 42 1 6.1329 1.0464 -4.9993 43 1 5.4699 -0.3419 -6.0160 44 1 3.2193 0.8228 -6.1403 45 1 3.8819 2.2118 -5.1236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687466588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:40 Heat of formation + Delta-G solvation = -11.315559 kcal Electronic energy + Delta-G solvation = -22930.777392 eV Core-core repulsion = 19949.416127 eV Total energy + Delta-G solvation = -2981.361265 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.28082 -37.08214 -35.47848 -34.07463 -31.88475 -29.87107 -28.76465 -26.47678 -25.96694 -25.21636 -23.28123 -21.70912 -21.04459 -20.43954 -18.95678 -18.68298 -16.18455 -15.78453 -15.36841 -15.00631 -14.53528 -14.37550 -13.76875 -13.54765 -13.37858 -13.11174 -12.94314 -12.68755 -12.33137 -11.96516 -11.66469 -11.39212 -11.18463 -11.12233 -10.91609 -10.82564 -10.67602 -10.58645 -10.39854 -10.35329 -10.03729 -9.97227 -9.71919 -9.33076 -9.24617 -8.84274 -8.65466 -8.41358 -7.92247 -6.86829 -5.68158 -3.76854 3.46098 3.50655 3.53533 4.32465 4.59816 4.81688 5.11566 5.26108 5.26436 5.45839 5.59639 5.67341 5.71065 5.74525 5.80561 5.89965 5.98345 6.00020 6.02778 6.09776 6.16610 6.21428 6.29015 6.31204 6.33326 6.49844 6.60961 6.62109 6.67061 6.71475 6.77694 6.84314 6.92725 7.02293 7.09794 7.33955 7.42912 7.53314 7.79118 7.82062 8.20900 8.42693 8.48281 8.72290 9.15675 9.83227 11.27715 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.008491 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.730280 B = 3296.977107 C = 3788.024285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.347 6.347 3 C 0.098 3.902 4 H 0.050 0.950 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.121 4.121 8 C -0.094 4.094 9 C 0.098 3.902 10 H 0.023 0.977 11 N -0.477 5.477 12 C 0.027 3.973 13 C 0.105 3.895 14 C 0.069 3.931 15 C -0.479 4.479 16 H 0.049 0.951 17 C 0.093 3.907 18 N -0.857 5.857 19 Si 0.889 3.111 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.280 1.280 23 C -0.212 4.212 24 C -0.221 4.221 25 H 0.026 0.974 26 H 0.035 0.965 27 H 0.078 0.922 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.091 0.909 36 H -0.005 1.005 37 H 0.080 0.920 38 H 0.044 0.956 39 H -0.028 1.028 40 H 0.126 0.874 41 H 0.254 0.746 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.540 6.574 7.507 10.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.040 3.960 4 H 0.068 0.932 5 C -0.177 4.177 6 C -0.148 4.148 7 C -0.159 4.159 8 C -0.131 4.131 9 C -0.011 4.011 10 H 0.041 0.959 11 N -0.199 5.199 12 C -0.122 4.122 13 C -0.022 4.022 14 C 0.069 3.931 15 C -0.516 4.516 16 H 0.067 0.933 17 C -0.111 4.111 18 N -0.493 5.493 19 Si 0.718 3.282 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.206 1.206 23 C -0.251 4.251 24 C -0.259 4.259 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.097 0.903 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.013 0.987 37 H 0.098 0.902 38 H 0.062 0.938 39 H -0.010 1.010 40 H 0.144 0.856 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.596 5.853 7.744 10.352 hybrid contribution -0.397 0.369 -0.246 0.595 sum -3.993 6.222 7.497 10.529 Atomic orbital electron populations 1.22667 0.83133 1.01982 0.98584 1.88118 1.17467 1.26303 1.94550 1.22122 0.95105 0.85143 0.93660 0.93167 1.22027 0.99549 0.99184 0.96987 1.21395 0.95924 1.00110 0.97355 1.21620 0.96299 1.00265 0.97698 1.21413 0.99466 1.00670 0.91577 1.21568 0.93207 0.95633 0.90685 0.95919 1.61622 1.11054 1.48469 0.98743 1.22446 0.96010 0.92525 1.01232 1.21945 0.91094 0.94072 0.95071 1.18992 0.94867 0.93483 0.85788 1.20173 1.25568 0.96986 1.08863 0.93263 1.24675 0.94775 0.97637 0.93997 1.69823 1.36249 1.31842 1.11394 0.86749 0.79791 0.84939 0.76747 1.21131 1.21558 1.20574 1.23015 0.91331 1.02907 1.07853 1.22954 0.99865 0.96555 1.06510 0.95522 0.94593 0.90332 0.92550 0.91867 0.93308 0.91246 0.93365 0.92474 0.91366 0.89053 0.98707 0.90174 0.93754 1.01027 0.85636 0.93511 0.92137 0.90589 0.91021 0.92081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 10.82 101.05 1.09 1.60 16 2 O -0.35 -6.49 8.86 -35.23 -0.31 -6.80 16 3 C 0.10 1.66 1.88 -26.73 -0.05 1.61 16 4 H 0.05 0.82 6.10 -51.93 -0.32 0.51 16 5 C -0.14 -1.96 5.63 -26.73 -0.15 -2.11 16 6 C -0.11 -1.58 5.78 -26.73 -0.15 -1.73 16 7 C -0.12 -1.86 5.92 -26.73 -0.16 -2.02 16 8 C -0.09 -1.79 4.11 -26.73 -0.11 -1.90 16 9 C 0.10 1.87 1.72 -67.71 -0.12 1.76 16 10 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 11 N -0.48 -10.46 3.89 -234.89 -0.91 -11.37 16 12 C 0.03 0.54 8.67 60.07 0.52 1.06 16 13 C 0.10 2.47 3.66 -3.83 -0.01 2.45 16 14 C 0.07 1.71 1.32 -155.66 -0.21 1.50 16 15 C -0.48 -12.97 8.74 -34.44 -0.30 -13.27 16 16 H 0.05 1.37 7.82 -52.48 -0.41 0.96 16 17 C 0.09 2.49 5.31 -17.82 -0.09 2.40 16 18 N -0.86 -22.51 8.84 55.43 0.49 -22.02 16 19 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 C -0.21 -4.88 9.96 -26.69 -0.27 -5.15 16 24 C -0.22 -4.91 8.08 -26.69 -0.22 -5.13 16 25 H 0.03 0.34 7.87 -51.93 -0.41 -0.07 16 26 H 0.04 0.53 8.04 -51.93 -0.42 0.11 16 27 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.72 7.87 -51.93 -0.41 0.31 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.09 7.68 -51.93 -0.40 0.69 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.42 6.29 -51.93 -0.33 1.09 16 35 H 0.09 2.04 7.15 -51.93 -0.37 1.66 16 36 H -0.01 -0.10 8.13 -51.93 -0.42 -0.52 16 37 H 0.08 1.74 5.52 -51.93 -0.29 1.45 16 38 H 0.04 0.83 6.49 -51.93 -0.34 0.50 16 39 H -0.03 -0.65 8.09 -51.93 -0.42 -1.07 16 40 H 0.13 3.17 3.87 -51.93 -0.20 2.97 16 41 H 0.25 6.58 8.32 -40.82 -0.34 6.24 16 42 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 44 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 334.70 15.07 5.04 5.04 Total: -1.00 -27.12 334.70 -9.03 -36.15 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.09 Total: 1.41 kcal Atomic # 6 Polarization: -18.71 SS G_CDS: -0.22 Total: -18.93 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: -0.42 Total: -33.40 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.31 Total: -6.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.12 -9.03 -36.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687466588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.833 kcal (2) G-P(sol) polarization free energy of solvation -27.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds