Wall clock time and date at job start Mon Mar 30 2020 07:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 113.99887 * 2 1 4 4 H 1.08995 * 109.46919 * 329.99893 * 3 2 1 5 5 C 1.52994 * 109.47044 * 90.00369 * 3 2 1 6 6 C 1.53003 * 109.47553 * 59.99766 * 5 3 2 7 7 C 1.52995 * 109.46708 * 59.99915 * 6 5 3 8 8 C 1.52999 * 109.47417 * 299.99856 * 7 6 5 9 9 C 1.53002 * 109.46680 * 210.00264 * 3 2 1 10 10 H 1.09000 * 109.46635 * 180.02562 * 9 3 2 11 11 N 1.46898 * 109.47617 * 60.00171 * 9 3 2 12 12 C 1.46904 * 110.99746 * 56.03969 * 11 9 3 13 13 C 1.46894 * 111.00278 * 179.97438 * 11 9 3 14 14 C 1.52998 * 109.47366 * 174.84362 * 13 11 9 15 15 C 1.50703 * 115.54995 * 305.97940 * 14 13 11 16 16 H 1.08004 * 119.99702 * 144.34914 * 15 14 13 17 17 C 1.37872 * 119.99833 * 324.35340 * 15 14 13 18 18 N 1.31520 * 119.99989 * 4.55828 * 17 15 14 19 19 Si 1.86799 * 120.00041 * 184.56544 * 17 15 14 20 20 H 1.48500 * 109.47220 * 59.99579 * 19 17 15 21 21 H 1.48495 * 109.47358 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47086 * 299.99910 * 19 17 15 23 23 C 1.52997 * 117.50043 * 160.30452 * 14 13 11 24 24 C 1.53002 * 117.49664 * 91.64290 * 14 13 11 25 25 H 1.09000 * 109.47181 * 299.99941 * 1 2 3 26 26 H 1.09002 * 109.47347 * 59.99849 * 1 2 3 27 27 H 1.09004 * 109.47005 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46946 * 299.99547 * 5 3 2 29 29 H 1.09000 * 109.47222 * 179.97438 * 5 3 2 30 30 H 1.08997 * 109.46981 * 179.97438 * 6 5 3 31 31 H 1.09000 * 109.47003 * 300.00314 * 6 5 3 32 32 H 1.09003 * 109.47738 * 60.00161 * 7 6 5 33 33 H 1.09005 * 109.47062 * 180.02562 * 7 6 5 34 34 H 1.09005 * 109.47276 * 179.97438 * 8 7 6 35 35 H 1.09000 * 109.47477 * 300.00326 * 8 7 6 36 36 H 1.08995 * 109.46805 * 55.09882 * 12 11 9 37 37 H 1.09000 * 109.46595 * 175.09608 * 12 11 9 38 38 H 1.08991 * 109.47347 * 295.09655 * 12 11 9 39 39 H 1.09002 * 109.46835 * 294.84567 * 13 11 9 40 40 H 1.08996 * 109.47402 * 54.84169 * 13 11 9 41 41 H 0.97006 * 119.99638 * 185.00728 * 18 17 15 42 42 H 1.08999 * 117.50160 * 0.02562 * 23 14 13 43 43 H 1.08997 * 117.49908 * 145.02298 * 23 14 13 44 44 H 1.08997 * 117.49858 * 214.97766 * 24 14 13 45 45 H 1.09001 * 117.50158 * 0.02562 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2177 1.7713 1.4424 6 6 3.1515 0.7973 2.1637 7 6 4.5001 0.7552 1.4424 8 6 4.2926 0.2892 0.0000 9 6 3.3588 1.2632 -0.7213 10 1 3.8023 2.2589 -0.7209 11 7 3.1597 0.8159 -2.1063 12 6 2.1935 1.6755 -2.8033 13 6 4.4361 0.7637 -2.8314 14 6 4.2077 0.1735 -4.2244 15 6 3.5166 -1.1653 -4.2577 16 1 2.8262 -1.3969 -5.0554 17 6 3.7657 -2.0944 -3.2700 18 7 4.5359 -1.7806 -2.2512 19 14 3.0092 -3.7989 -3.3788 20 1 3.4692 -4.4661 -4.6232 21 1 3.4286 -4.6026 -2.2027 22 1 1.5289 -3.6832 -3.3975 23 6 5.2706 0.4466 -5.2904 24 6 3.9127 1.1493 -5.3653 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.2569 1.8014 1.9563 29 1 2.6614 2.7669 1.4425 30 1 3.2996 1.1295 3.1912 31 1 2.7082 -0.1985 2.1637 32 1 4.9435 1.7509 1.4424 33 1 5.1653 0.0609 1.9560 34 1 5.2534 0.2596 -0.5141 35 1 3.8493 -0.7066 -0.0001 36 1 2.5200 2.7135 -2.7413 37 1 2.1299 1.3764 -3.8496 38 1 1.2140 1.5741 -2.3363 39 1 4.8419 1.7709 -2.9256 40 1 5.1403 0.1382 -2.2829 41 1 4.7702 -2.4551 -1.5945 42 1 6.1329 1.0464 -4.9993 43 1 5.4699 -0.3419 -6.0160 44 1 3.2193 0.8228 -6.1403 45 1 3.8819 2.2118 -5.1236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687466588.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:39 Heat of formation + Delta-G solvation = -25.573131 kcal Electronic energy + Delta-G solvation = -22931.395646 eV Core-core repulsion = 19949.416127 eV Total energy + Delta-G solvation = -2981.979519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.68442 -38.79344 -36.88229 -35.60767 -33.92085 -31.17892 -30.15180 -28.17929 -27.30258 -27.11429 -24.83195 -23.11118 -22.79769 -21.84981 -20.60818 -20.30801 -17.97708 -17.27909 -16.70479 -16.56303 -16.32464 -15.82606 -15.54053 -15.11065 -14.78864 -14.55249 -14.45258 -14.05515 -13.96836 -13.35273 -13.09057 -13.00171 -12.90249 -12.81235 -12.66766 -12.36879 -12.23297 -12.17397 -12.09399 -11.90798 -11.75546 -11.42851 -11.21127 -11.09884 -10.75502 -10.52826 -10.33284 -10.14757 -9.85015 -8.52014 -7.70575 -5.84988 1.48598 1.51638 1.55776 2.58448 3.06707 3.17640 3.47804 3.79745 3.89331 4.05111 4.17492 4.35229 4.40396 4.45799 4.47746 4.54830 4.57058 4.58671 4.67209 4.72746 4.73727 4.78680 4.85183 4.87864 4.93626 4.96502 4.99655 5.06826 5.11766 5.18168 5.23808 5.34795 5.41166 5.46726 5.54216 5.60349 5.61718 5.79587 5.95568 6.22161 6.54463 6.56572 6.81869 6.89707 7.11939 7.74960 9.20382 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016927 B = 0.008491 C = 0.007390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.730280 B = 3296.977107 C = 3788.024285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.380 6.380 3 C 0.099 3.901 4 H 0.056 0.944 5 C -0.133 4.133 6 C -0.106 4.106 7 C -0.116 4.116 8 C -0.082 4.082 9 C 0.094 3.906 10 H 0.029 0.971 11 N -0.497 5.497 12 C 0.033 3.967 13 C 0.117 3.883 14 C 0.043 3.957 15 C -0.498 4.498 16 H 0.032 0.968 17 C 0.061 3.939 18 N -0.857 5.857 19 Si 0.933 3.067 20 H -0.284 1.284 21 H -0.288 1.288 22 H -0.285 1.285 23 C -0.212 4.212 24 C -0.200 4.200 25 H 0.054 0.946 26 H 0.034 0.966 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.042 0.958 35 H 0.054 0.946 36 H 0.010 0.990 37 H 0.061 0.939 38 H 0.054 0.946 39 H -0.027 1.027 40 H 0.105 0.895 41 H 0.251 0.749 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.188 7.964 8.824 12.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C 0.041 3.959 4 H 0.074 0.926 5 C -0.171 4.171 6 C -0.144 4.144 7 C -0.154 4.154 8 C -0.120 4.120 9 C -0.014 4.014 10 H 0.047 0.953 11 N -0.220 5.220 12 C -0.116 4.116 13 C -0.010 4.010 14 C 0.042 3.958 15 C -0.535 4.535 16 H 0.050 0.950 17 C -0.143 4.143 18 N -0.493 5.493 19 Si 0.762 3.238 20 H -0.210 1.210 21 H -0.214 1.214 22 H -0.212 1.212 23 C -0.251 4.251 24 C -0.237 4.237 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.028 0.972 37 H 0.080 0.920 38 H 0.073 0.927 39 H -0.009 1.009 40 H 0.122 0.878 41 H 0.061 0.939 42 H 0.092 0.908 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.246 7.248 9.061 12.356 hybrid contribution -0.200 -0.075 -0.686 0.718 sum -4.446 7.173 8.375 11.889 Atomic orbital electron populations 1.22788 0.81510 1.02498 0.99820 1.88075 1.19408 1.27551 1.94863 1.22155 0.93641 0.84718 0.95404 0.92606 1.22000 1.00636 0.99616 0.94845 1.21358 0.94838 0.99429 0.98740 1.21574 0.97567 1.01025 0.95190 1.21216 0.97754 0.99065 0.93998 1.21677 0.94902 0.95498 0.89349 0.95303 1.61549 1.10488 1.49844 1.00080 1.22350 0.96219 0.92946 1.00046 1.21665 0.91649 0.93363 0.94354 1.19071 0.96122 0.93447 0.87121 1.20271 1.25966 0.98623 1.08678 0.94960 1.25133 0.95388 0.99692 0.94054 1.69956 1.36280 1.31889 1.11132 0.86059 0.78725 0.82471 0.76588 1.21001 1.21383 1.21156 1.23017 0.92062 1.03050 1.06930 1.22891 0.98987 0.96940 1.04901 0.92791 0.94710 0.90317 0.90638 0.90178 0.90497 0.93106 0.91774 0.92048 0.93933 0.92697 0.97219 0.92042 0.92689 1.00948 0.87779 0.93936 0.90833 0.91236 0.91117 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 10.82 113.37 1.23 2.09 16 2 O -0.38 -13.87 8.86 -148.98 -1.32 -15.19 16 3 C 0.10 3.16 1.88 30.59 0.06 3.21 16 4 H 0.06 1.69 6.10 -2.39 -0.01 1.68 16 5 C -0.13 -3.29 5.63 30.59 0.17 -3.12 16 6 C -0.11 -2.75 5.78 30.59 0.18 -2.57 16 7 C -0.12 -3.38 5.92 30.59 0.18 -3.20 16 8 C -0.08 -3.17 4.11 30.60 0.13 -3.04 16 9 C 0.09 3.52 1.72 44.92 0.08 3.60 16 10 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 11 N -0.50 -21.71 3.89 -897.07 -3.49 -25.20 16 12 C 0.03 1.29 8.67 127.69 1.11 2.40 16 13 C 0.12 5.53 3.66 86.30 0.32 5.84 16 14 C 0.04 2.13 1.32 -52.93 -0.07 2.06 16 15 C -0.50 -27.40 8.74 25.60 0.22 -27.17 16 16 H 0.03 1.83 7.82 -2.91 -0.02 1.81 16 17 C 0.06 3.30 5.31 84.65 0.45 3.75 16 18 N -0.86 -45.99 8.84 21.45 0.19 -45.80 16 19 Si 0.93 44.85 29.54 68.60 2.03 46.87 16 20 H -0.28 -13.49 7.11 99.48 0.71 -12.79 16 21 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 22 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 23 C -0.21 -9.65 9.96 30.62 0.30 -9.35 16 24 C -0.20 -8.70 8.08 30.62 0.25 -8.45 16 25 H 0.05 1.22 7.87 -2.39 -0.02 1.20 16 26 H 0.03 0.97 8.04 -2.39 -0.02 0.95 16 27 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 28 H 0.08 1.61 7.87 -2.39 -0.02 1.59 16 29 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.05 1.51 7.68 -2.39 -0.02 1.50 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.04 1.81 6.29 -2.38 -0.02 1.79 16 35 H 0.05 2.50 7.15 -2.39 -0.02 2.49 16 36 H 0.01 0.34 8.13 -2.39 -0.02 0.32 16 37 H 0.06 2.63 5.52 -2.39 -0.01 2.62 16 38 H 0.05 2.01 6.49 -2.39 -0.02 1.99 16 39 H -0.03 -1.25 8.09 -2.39 -0.02 -1.26 16 40 H 0.10 5.39 3.87 -2.39 -0.01 5.38 16 41 H 0.25 13.28 8.32 -92.70 -0.77 12.51 16 42 H 0.07 3.11 8.14 -2.39 -0.02 3.10 16 43 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 44 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -58.29 334.70 2.93 -55.35 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.93 Total: 17.92 kcal Atomic # 6 Polarization: -38.55 SS G_CDS: 4.60 Total: -33.95 kcal Atomic # 7 Polarization: -67.69 SS G_CDS: -3.30 Total: -71.00 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.32 Total: -15.19 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -58.29 2.93 -55.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687466588.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.778 kcal (2) G-P(sol) polarization free energy of solvation -58.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds