Wall clock time and date at job start Mon Mar 30 2020 07:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99947 * 2 1 4 4 H 1.08996 * 109.46941 * 330.00151 * 3 2 1 5 5 C 1.53010 * 109.46872 * 90.00116 * 3 2 1 6 6 C 1.53002 * 109.46900 * 179.97438 * 5 3 2 7 7 C 1.52991 * 109.47221 * 300.00090 * 6 5 3 8 8 C 1.53001 * 109.47647 * 60.00000 * 7 6 5 9 9 C 1.52998 * 109.47260 * 209.99664 * 3 2 1 10 10 H 1.08996 * 109.47541 * 300.00119 * 9 3 2 11 11 N 1.46902 * 109.47089 * 60.00135 * 9 3 2 12 12 C 1.46903 * 110.99687 * 66.04249 * 11 9 3 13 13 C 1.46901 * 111.00197 * 189.99691 * 11 9 3 14 14 C 1.53007 * 109.46843 * 160.57993 * 13 11 9 15 15 C 1.50694 * 115.55091 * 278.72777 * 14 13 11 16 16 H 1.08001 * 119.99661 * 145.00600 * 15 14 13 17 17 C 1.37873 * 120.00004 * 325.00751 * 15 14 13 18 18 N 1.31513 * 120.00179 * 336.94298 * 17 15 14 19 19 Si 1.86803 * 119.99941 * 156.94315 * 17 15 14 20 20 H 1.48501 * 109.47030 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47114 * 119.99902 * 19 17 15 22 22 H 1.48498 * 109.47222 * 239.99834 * 19 17 15 23 23 C 1.53002 * 117.49535 * 133.01930 * 14 13 11 24 24 C 1.52998 * 60.00077 * 252.51413 * 23 14 13 25 25 H 1.09005 * 109.47277 * 299.99766 * 1 2 3 26 26 H 1.09003 * 109.47170 * 60.00127 * 1 2 3 27 27 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46858 * 59.99983 * 5 3 2 29 29 H 1.08995 * 109.46907 * 299.99848 * 5 3 2 30 30 H 1.08999 * 109.47006 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.46797 * 60.00285 * 6 5 3 32 32 H 1.09005 * 109.47395 * 299.99829 * 7 6 5 33 33 H 1.09002 * 109.47538 * 179.97438 * 7 6 5 34 34 H 1.08995 * 109.47297 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47008 * 59.99638 * 8 7 6 36 36 H 1.09006 * 109.47006 * 193.87521 * 12 11 9 37 37 H 1.08998 * 109.47216 * 73.87918 * 12 11 9 38 38 H 1.08993 * 109.47583 * 313.87316 * 12 11 9 39 39 H 1.08996 * 109.46982 * 280.58363 * 13 11 9 40 40 H 1.09002 * 109.46895 * 40.58443 * 13 11 9 41 41 H 0.97003 * 120.00052 * 185.02809 * 18 17 15 42 42 H 1.09000 * 117.49509 * 0.02562 * 23 14 13 43 43 H 1.08998 * 117.49832 * 145.01899 * 23 14 13 44 44 H 1.09008 * 117.49717 * 252.51438 * 24 23 14 45 45 H 1.08992 * 117.50153 * 107.49328 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2176 1.7714 1.4426 6 6 2.8405 3.1688 1.4426 7 6 4.1892 3.1261 0.7216 8 6 3.9818 2.6602 -0.7210 9 6 3.3589 1.2633 -0.7212 10 1 4.0241 0.5695 -0.2074 11 7 3.1598 0.8160 -2.1062 12 6 2.3848 1.8018 -2.8715 13 6 4.4456 0.5356 -2.7589 14 6 4.2143 -0.3608 -3.9771 15 6 4.0679 -1.8315 -3.6835 16 1 3.3928 -2.4350 -4.2721 17 6 4.7958 -2.4067 -2.6636 18 7 5.9100 -1.8424 -2.2516 19 14 4.1994 -3.9876 -1.8669 20 1 2.9301 -4.4164 -2.5074 21 1 5.2246 -5.0476 -2.0421 22 1 3.9698 -3.7558 -0.4182 23 6 4.9027 0.0339 -5.2853 24 6 3.3913 0.2147 -5.1314 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.8828 1.0774 1.9563 29 1 1.2568 1.8014 1.9564 30 1 2.9879 3.5009 2.4703 31 1 2.1755 3.8630 0.9287 32 1 4.8542 2.4319 1.2355 33 1 4.6328 4.1218 0.7211 34 1 4.9427 2.6293 -1.2345 35 1 3.3169 3.3543 -1.2349 36 1 2.0414 1.3505 -3.8024 37 1 3.0135 2.6635 -3.0957 38 1 1.5244 2.1227 -2.2844 39 1 4.9028 1.4721 -3.0783 40 1 5.1072 0.0295 -2.0558 41 1 6.4598 -2.2840 -1.5855 42 1 5.5206 0.9318 -5.2779 43 1 5.2500 -0.7704 -5.9338 44 1 2.7441 -0.4708 -5.6787 45 1 3.0145 1.2316 -5.0229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687466591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:47 Heat of formation + Delta-G solvation = -13.318679 kcal Electronic energy + Delta-G solvation = -22544.792415 eV Core-core repulsion = 19563.344288 eV Total energy + Delta-G solvation = -2981.448126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.55240 -37.19331 -36.03287 -34.21928 -32.05210 -29.89556 -28.86477 -27.00866 -26.02343 -25.26185 -23.66329 -22.03317 -21.08977 -20.78125 -19.20179 -18.80837 -16.40919 -15.96546 -15.58381 -14.81524 -14.67656 -14.54166 -14.22627 -13.82714 -13.53118 -13.41296 -13.19313 -12.83477 -12.57801 -12.28356 -11.95493 -11.53584 -11.39065 -11.28889 -11.03056 -10.88252 -10.82806 -10.71652 -10.55921 -10.41986 -10.32012 -10.09511 -9.89906 -9.87504 -9.20217 -9.05228 -8.82068 -8.52206 -7.83538 -7.16727 -5.95440 -3.84441 3.40964 3.51459 3.56589 4.12062 4.54398 4.58284 4.88187 5.05562 5.11304 5.22116 5.32373 5.38695 5.47493 5.56789 5.63659 5.67991 5.70320 5.75288 5.82404 5.90364 5.98036 6.04903 6.08143 6.13697 6.18962 6.22243 6.28089 6.32931 6.38612 6.54476 6.54765 6.62477 6.74983 6.81804 6.87986 7.07011 7.23404 7.45325 7.67236 7.73343 8.05932 8.18074 8.23491 8.64881 9.05537 9.69564 11.09542 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.007911 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.401166 B = 3538.403591 C = 4098.907408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.358 6.358 3 C 0.102 3.898 4 H 0.055 0.945 5 C -0.142 4.142 6 C -0.114 4.114 7 C -0.117 4.117 8 C -0.149 4.149 9 C 0.092 3.908 10 H 0.087 0.913 11 N -0.504 5.504 12 C 0.014 3.986 13 C 0.088 3.912 14 C 0.074 3.926 15 C -0.475 4.475 16 H 0.057 0.943 17 C 0.081 3.919 18 N -0.876 5.876 19 Si 0.885 3.115 20 H -0.273 1.273 21 H -0.291 1.291 22 H -0.280 1.280 23 C -0.210 4.210 24 C -0.217 4.217 25 H 0.028 0.972 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.060 0.940 36 H 0.081 0.919 37 H 0.012 0.988 38 H 0.046 0.954 39 H -0.003 1.003 40 H 0.120 0.880 41 H 0.259 0.741 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.761 10.114 6.656 13.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.276 6.276 3 C 0.043 3.957 4 H 0.073 0.927 5 C -0.180 4.180 6 C -0.152 4.152 7 C -0.155 4.155 8 C -0.189 4.189 9 C -0.018 4.018 10 H 0.105 0.895 11 N -0.226 5.226 12 C -0.134 4.134 13 C -0.038 4.038 14 C 0.073 3.927 15 C -0.511 4.511 16 H 0.075 0.925 17 C -0.121 4.121 18 N -0.514 5.514 19 Si 0.713 3.287 20 H -0.198 1.198 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.248 4.248 24 C -0.255 4.255 25 H 0.047 0.953 26 H 0.056 0.944 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.099 0.901 37 H 0.031 0.969 38 H 0.064 0.936 39 H 0.015 0.985 40 H 0.138 0.862 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -6.807 9.484 6.837 13.529 hybrid contribution -0.061 0.251 0.294 0.391 sum -6.868 9.736 7.131 13.885 Atomic orbital electron populations 1.22679 0.82554 1.02201 0.98764 1.88087 1.18128 1.26720 1.94638 1.22132 0.94932 0.84851 0.93763 0.92746 1.22066 1.01013 0.97052 0.97896 1.21475 0.96931 0.96572 1.00182 1.21510 0.97040 1.00936 0.96030 1.22242 1.01633 0.98272 0.96733 1.21753 0.94599 0.94083 0.91365 0.89485 1.61963 1.20137 1.40802 0.99656 1.22774 0.97128 0.93867 0.99668 1.21962 0.88547 0.94781 0.98559 1.18821 0.95114 0.94341 0.84432 1.20388 1.24093 0.91495 1.15171 0.92473 1.24810 0.94016 0.97194 0.96123 1.69904 1.10998 1.39092 1.31380 0.86668 0.79011 0.82914 0.80101 1.19789 1.21803 1.20576 1.23022 0.93198 1.00934 1.07670 1.23081 0.93549 0.99993 1.08836 0.95308 0.94449 0.90121 0.91025 0.92202 0.92041 0.92332 0.91689 0.92318 0.91252 0.92093 0.90077 0.96939 0.93559 0.98488 0.86240 0.93083 0.92271 0.90647 0.91062 0.90908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.82 101.05 1.09 1.59 16 2 O -0.36 -6.63 10.21 -35.23 -0.36 -6.99 16 3 C 0.10 1.63 1.90 -26.73 -0.05 1.58 16 4 H 0.05 0.83 5.95 -51.93 -0.31 0.52 16 5 C -0.14 -1.89 5.54 -26.73 -0.15 -2.04 16 6 C -0.11 -1.30 5.92 -26.73 -0.16 -1.46 16 7 C -0.12 -1.48 5.92 -26.74 -0.16 -1.63 16 8 C -0.15 -2.28 4.51 -26.76 -0.12 -2.40 16 9 C 0.09 1.67 1.86 -67.74 -0.13 1.54 16 10 H 0.09 1.82 7.83 -51.93 -0.41 1.42 16 11 N -0.50 -10.56 4.51 -234.91 -1.06 -11.62 16 12 C 0.01 0.25 7.49 60.07 0.45 0.70 16 13 C 0.09 2.08 4.14 -3.82 -0.02 2.06 16 14 C 0.07 1.87 1.94 -155.66 -0.30 1.57 16 15 C -0.47 -13.36 8.97 -34.44 -0.31 -13.67 16 16 H 0.06 1.64 7.92 -52.49 -0.42 1.22 16 17 C 0.08 2.26 5.01 -17.82 -0.09 2.17 16 18 N -0.88 -24.67 11.17 55.43 0.62 -24.05 16 19 Si 0.88 22.03 29.60 -169.99 -5.03 16.99 16 20 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 C -0.21 -4.96 9.88 -26.73 -0.26 -5.22 16 24 C -0.22 -4.86 8.54 -26.73 -0.23 -5.09 16 25 H 0.03 0.34 7.87 -51.93 -0.41 -0.07 16 26 H 0.04 0.51 8.09 -51.93 -0.42 0.09 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.06 0.72 7.87 -51.93 -0.41 0.31 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.15 7.15 -51.93 -0.37 0.78 16 35 H 0.06 0.89 6.64 -51.93 -0.34 0.54 16 36 H 0.08 1.53 4.92 -51.93 -0.26 1.28 16 37 H 0.01 0.21 6.82 -51.93 -0.35 -0.14 16 38 H 0.05 0.74 5.98 -51.93 -0.31 0.43 16 39 H 0.00 -0.07 7.04 -51.93 -0.37 -0.43 16 40 H 0.12 3.16 5.01 -51.93 -0.26 2.90 16 41 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 42 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 43 H 0.07 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.07 1.59 8.14 -51.92 -0.42 1.17 16 45 H 0.07 1.48 5.53 -51.93 -0.29 1.19 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -29.19 335.40 -9.06 -38.25 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.85 Total: 2.65 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -0.43 Total: -20.30 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.44 Total: -35.67 kcal Atomic # 8 Polarization: -6.63 SS G_CDS: -0.36 Total: -6.99 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 16.99 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -29.19 -9.06 -38.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687466591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.935 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds