Wall clock time and date at job start Mon Mar 30 2020 07:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99947 * 2 1 4 4 H 1.08996 * 109.46941 * 330.00151 * 3 2 1 5 5 C 1.53010 * 109.46872 * 90.00116 * 3 2 1 6 6 C 1.53002 * 109.46900 * 179.97438 * 5 3 2 7 7 C 1.52991 * 109.47221 * 300.00090 * 6 5 3 8 8 C 1.53001 * 109.47647 * 60.00000 * 7 6 5 9 9 C 1.52998 * 109.47260 * 209.99664 * 3 2 1 10 10 H 1.08996 * 109.47541 * 300.00119 * 9 3 2 11 11 N 1.46902 * 109.47089 * 60.00135 * 9 3 2 12 12 C 1.46903 * 110.99687 * 66.04249 * 11 9 3 13 13 C 1.46901 * 111.00197 * 189.99691 * 11 9 3 14 14 C 1.53007 * 109.46843 * 160.57993 * 13 11 9 15 15 C 1.50694 * 115.55091 * 278.72777 * 14 13 11 16 16 H 1.08001 * 119.99661 * 145.00600 * 15 14 13 17 17 C 1.37873 * 120.00004 * 325.00751 * 15 14 13 18 18 N 1.31513 * 120.00179 * 336.94298 * 17 15 14 19 19 Si 1.86803 * 119.99941 * 156.94315 * 17 15 14 20 20 H 1.48501 * 109.47030 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47114 * 119.99902 * 19 17 15 22 22 H 1.48498 * 109.47222 * 239.99834 * 19 17 15 23 23 C 1.53002 * 117.49535 * 133.01930 * 14 13 11 24 24 C 1.52998 * 60.00077 * 252.51413 * 23 14 13 25 25 H 1.09005 * 109.47277 * 299.99766 * 1 2 3 26 26 H 1.09003 * 109.47170 * 60.00127 * 1 2 3 27 27 H 1.09001 * 109.46997 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46858 * 59.99983 * 5 3 2 29 29 H 1.08995 * 109.46907 * 299.99848 * 5 3 2 30 30 H 1.08999 * 109.47006 * 179.97438 * 6 5 3 31 31 H 1.09005 * 109.46797 * 60.00285 * 6 5 3 32 32 H 1.09005 * 109.47395 * 299.99829 * 7 6 5 33 33 H 1.09002 * 109.47538 * 179.97438 * 7 6 5 34 34 H 1.08995 * 109.47297 * 180.02562 * 8 7 6 35 35 H 1.08996 * 109.47008 * 59.99638 * 8 7 6 36 36 H 1.09006 * 109.47006 * 193.87521 * 12 11 9 37 37 H 1.08998 * 109.47216 * 73.87918 * 12 11 9 38 38 H 1.08993 * 109.47583 * 313.87316 * 12 11 9 39 39 H 1.08996 * 109.46982 * 280.58363 * 13 11 9 40 40 H 1.09002 * 109.46895 * 40.58443 * 13 11 9 41 41 H 0.97003 * 120.00052 * 185.02809 * 18 17 15 42 42 H 1.09000 * 117.49509 * 0.02562 * 23 14 13 43 43 H 1.08998 * 117.49832 * 145.01899 * 23 14 13 44 44 H 1.09008 * 117.49717 * 252.51438 * 24 23 14 45 45 H 1.08992 * 117.50153 * 107.49328 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 -0.5138 5 6 2.2176 1.7714 1.4426 6 6 2.8405 3.1688 1.4426 7 6 4.1892 3.1261 0.7216 8 6 3.9818 2.6602 -0.7210 9 6 3.3589 1.2633 -0.7212 10 1 4.0241 0.5695 -0.2074 11 7 3.1598 0.8160 -2.1062 12 6 2.3848 1.8018 -2.8715 13 6 4.4456 0.5356 -2.7589 14 6 4.2143 -0.3608 -3.9771 15 6 4.0679 -1.8315 -3.6835 16 1 3.3928 -2.4350 -4.2721 17 6 4.7958 -2.4067 -2.6636 18 7 5.9100 -1.8424 -2.2516 19 14 4.1994 -3.9876 -1.8669 20 1 2.9301 -4.4164 -2.5074 21 1 5.2246 -5.0476 -2.0421 22 1 3.9698 -3.7558 -0.4182 23 6 4.9027 0.0339 -5.2853 24 6 3.3913 0.2147 -5.1314 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 2.8828 1.0774 1.9563 29 1 1.2568 1.8014 1.9564 30 1 2.9879 3.5009 2.4703 31 1 2.1755 3.8630 0.9287 32 1 4.8542 2.4319 1.2355 33 1 4.6328 4.1218 0.7211 34 1 4.9427 2.6293 -1.2345 35 1 3.3169 3.3543 -1.2349 36 1 2.0414 1.3505 -3.8024 37 1 3.0135 2.6635 -3.0957 38 1 1.5244 2.1227 -2.2844 39 1 4.9028 1.4721 -3.0783 40 1 5.1072 0.0295 -2.0558 41 1 6.4598 -2.2840 -1.5855 42 1 5.5206 0.9318 -5.2779 43 1 5.2500 -0.7704 -5.9338 44 1 2.7441 -0.4708 -5.6787 45 1 3.0145 1.2316 -5.0229 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687466591.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:46 Heat of formation + Delta-G solvation = -30.683977 kcal Electronic energy + Delta-G solvation = -22545.545431 eV Core-core repulsion = 19563.344288 eV Total energy + Delta-G solvation = -2982.201142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88439 -38.85367 -37.37091 -35.67205 -34.16962 -31.02361 -30.15003 -28.69787 -27.33033 -27.16634 -25.11575 -23.23340 -22.91900 -22.02600 -20.77463 -20.47712 -18.11970 -17.47539 -16.96203 -16.59112 -16.10911 -15.88715 -15.71026 -15.55367 -14.94501 -14.71427 -14.41332 -14.21206 -14.08475 -13.76140 -13.27301 -13.16062 -13.02496 -12.80736 -12.79219 -12.50283 -12.32618 -12.14724 -12.03460 -11.85321 -11.73694 -11.62342 -11.51663 -11.24241 -11.08326 -10.80162 -10.46165 -10.20788 -9.85178 -8.73417 -8.08459 -6.02337 1.38017 1.46371 1.53984 2.45991 2.94640 2.99106 3.21144 3.76354 3.79713 3.99747 4.08390 4.17518 4.20034 4.28757 4.36848 4.44612 4.50651 4.52530 4.56139 4.61172 4.62675 4.72528 4.78855 4.83288 4.86933 4.91299 4.95135 4.96227 5.11514 5.13137 5.15564 5.19547 5.22002 5.26084 5.31872 5.39738 5.47788 5.59144 5.67123 6.08862 6.42560 6.49724 6.56684 6.69392 6.92160 7.52827 8.95501 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.007911 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.401166 B = 3538.403591 C = 4098.907408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.400 6.400 3 C 0.104 3.896 4 H 0.069 0.931 5 C -0.137 4.137 6 C -0.107 4.107 7 C -0.115 4.115 8 C -0.141 4.141 9 C 0.091 3.909 10 H 0.044 0.956 11 N -0.526 5.526 12 C 0.018 3.982 13 C 0.104 3.896 14 C 0.042 3.958 15 C -0.497 4.497 16 H 0.041 0.959 17 C 0.045 3.955 18 N -0.894 5.894 19 Si 0.935 3.065 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.284 1.284 23 C -0.211 4.211 24 C -0.191 4.191 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.024 0.976 38 H 0.069 0.931 39 H -0.001 1.001 40 H 0.086 0.914 41 H 0.260 0.740 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.341 12.053 7.488 16.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.319 6.319 3 C 0.046 3.954 4 H 0.087 0.913 5 C -0.176 4.176 6 C -0.144 4.144 7 C -0.153 4.153 8 C -0.180 4.180 9 C -0.018 4.018 10 H 0.063 0.937 11 N -0.248 5.248 12 C -0.130 4.130 13 C -0.023 4.023 14 C 0.041 3.959 15 C -0.534 4.534 16 H 0.060 0.940 17 C -0.156 4.156 18 N -0.532 5.532 19 Si 0.762 3.238 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.210 1.210 23 C -0.250 4.250 24 C -0.228 4.228 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.042 0.958 38 H 0.087 0.913 39 H 0.017 0.983 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.392 11.427 7.665 16.117 hybrid contribution 0.421 -0.376 0.010 0.564 sum -7.971 11.051 7.675 15.639 Atomic orbital electron populations 1.22837 0.80586 1.02862 1.00279 1.88032 1.20503 1.28402 1.94990 1.22191 0.93481 0.84393 0.95353 0.91289 1.22035 1.01865 0.97810 0.95841 1.21464 0.95935 0.95494 1.01552 1.21511 0.98084 1.01619 0.94074 1.22131 1.00498 0.96657 0.98721 1.21749 0.95706 0.94661 0.89708 0.93722 1.61854 1.18951 1.42937 1.01010 1.22737 0.97588 0.93377 0.99269 1.21569 0.89532 0.94009 0.97185 1.18942 0.97578 0.93545 0.85871 1.20591 1.23892 0.93170 1.15708 0.94034 1.25339 0.94070 0.99730 0.96483 1.69993 1.11507 1.40085 1.31622 0.85876 0.78614 0.80472 0.78788 1.19850 1.20811 1.21030 1.22993 0.94550 1.01066 1.06376 1.23075 0.92601 1.01037 1.06122 0.92646 0.93915 0.90072 0.92783 0.90222 0.89793 0.90688 0.92953 0.90113 0.93341 0.90600 0.91042 0.95807 0.91257 0.98330 0.89619 0.93039 0.90961 0.91771 0.91261 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 10.82 113.37 1.23 2.04 16 2 O -0.40 -14.57 10.21 -148.98 -1.52 -16.09 16 3 C 0.10 3.18 1.90 30.60 0.06 3.24 16 4 H 0.07 1.88 5.95 -2.39 -0.01 1.87 16 5 C -0.14 -3.34 5.54 30.60 0.17 -3.17 16 6 C -0.11 -2.07 5.92 30.59 0.18 -1.89 16 7 C -0.11 -2.66 5.92 30.59 0.18 -2.48 16 8 C -0.14 -4.13 4.51 30.58 0.14 -4.00 16 9 C 0.09 3.32 1.86 44.90 0.08 3.40 16 10 H 0.04 1.98 7.83 -2.39 -0.02 1.96 16 11 N -0.53 -21.97 4.51 -897.13 -4.05 -26.01 16 12 C 0.02 0.61 7.49 127.69 0.96 1.57 16 13 C 0.10 5.03 4.14 86.31 0.36 5.38 16 14 C 0.04 2.13 1.94 -52.93 -0.10 2.02 16 15 C -0.50 -28.63 8.97 25.60 0.23 -28.40 16 16 H 0.04 2.45 7.92 -2.91 -0.02 2.42 16 17 C 0.04 2.54 5.01 84.65 0.42 2.96 16 18 N -0.89 -51.87 11.17 21.45 0.24 -51.63 16 19 Si 0.94 46.27 29.60 68.60 2.03 48.30 16 20 H -0.27 -13.44 7.11 99.48 0.71 -12.74 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.28 -14.15 7.11 99.48 0.71 -13.44 16 23 C -0.21 -9.97 9.88 30.59 0.30 -9.66 16 24 C -0.19 -8.38 8.54 30.59 0.26 -8.12 16 25 H 0.06 1.16 7.87 -2.38 -0.02 1.14 16 26 H 0.04 1.07 8.09 -2.39 -0.02 1.05 16 27 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.08 1.63 7.87 -2.39 -0.02 1.61 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.05 1.60 7.15 -2.39 -0.02 1.59 16 35 H 0.08 1.99 6.64 -2.39 -0.02 1.98 16 36 H 0.07 2.56 4.92 -2.38 -0.01 2.55 16 37 H 0.02 0.75 6.82 -2.39 -0.02 0.74 16 38 H 0.07 2.02 5.98 -2.39 -0.01 2.01 16 39 H 0.00 -0.06 7.04 -2.39 -0.02 -0.08 16 40 H 0.09 4.73 5.01 -2.39 -0.01 4.72 16 41 H 0.26 14.40 8.32 -92.71 -0.77 13.63 16 42 H 0.07 3.17 8.08 -2.39 -0.02 3.15 16 43 H 0.06 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.07 3.04 8.14 -2.38 -0.02 3.02 16 45 H 0.10 3.79 5.53 -2.39 -0.01 3.78 16 Total: -1.00 -64.40 335.40 2.11 -62.28 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: 0.94 Total: 20.25 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 4.47 Total: -37.10 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -3.81 Total: -77.65 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: -1.52 Total: -16.09 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -64.40 2.11 -62.28 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687466591.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.599 kcal (2) G-P(sol) polarization free energy of solvation -64.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds