Wall clock time and date at job start Mon Mar 30 2020 07:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99515 * 2 1 4 4 C 1.52990 * 109.47566 * 293.95692 * 3 2 1 5 5 C 1.53002 * 109.47265 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47308 * 180.02562 * 5 4 3 7 7 H 1.08009 * 120.00068 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00431 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00317 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99682 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47316 * 90.00262 * 10 8 6 12 12 H 1.48500 * 109.47147 * 210.00183 * 10 8 6 13 13 H 1.48499 * 109.46959 * 330.00184 * 10 8 6 14 14 C 1.46901 * 111.00221 * 123.95772 * 2 1 3 15 15 C 1.53001 * 109.46814 * 91.39099 * 14 2 1 16 16 C 1.51083 * 110.61249 * 166.06018 * 15 14 2 17 17 C 1.54960 * 104.88373 * 276.40658 * 16 15 14 18 18 C 1.56252 * 105.86872 * 353.56124 * 17 16 15 19 19 C 1.50714 * 101.85901 * 335.02369 * 18 17 16 20 20 H 1.08998 * 108.30296 * 292.16874 * 19 18 17 21 21 O 1.39677 * 127.82333 * 158.71567 * 19 18 17 22 22 C 1.46163 * 103.81877 * 198.35290 * 21 19 18 23 23 C 1.51583 * 110.62788 * 306.20514 * 15 14 2 24 24 H 1.08998 * 109.47558 * 53.64105 * 1 2 3 25 25 H 1.08999 * 109.46971 * 173.64077 * 1 2 3 26 26 H 1.09003 * 109.47321 * 293.63362 * 1 2 3 27 27 H 1.08998 * 109.46614 * 173.95523 * 3 2 1 28 28 H 1.09004 * 109.46696 * 53.96279 * 3 2 1 29 29 H 1.08995 * 109.47375 * 300.00134 * 4 3 2 30 30 H 1.09007 * 109.47323 * 60.00053 * 4 3 2 31 31 H 1.09000 * 109.47062 * 299.99579 * 5 4 3 32 32 H 1.08996 * 109.47302 * 59.99964 * 5 4 3 33 33 H 0.97006 * 119.99638 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.46736 * 211.39145 * 14 2 1 35 35 H 1.08995 * 109.46569 * 331.39354 * 14 2 1 36 36 H 1.09000 * 110.42779 * 35.81585 * 16 15 14 37 37 H 1.09003 * 110.42265 * 158.29865 * 16 15 14 38 38 H 1.09000 * 110.54978 * 234.27056 * 17 16 15 39 39 H 1.09001 * 109.86725 * 112.49136 * 17 16 15 40 40 H 1.08996 * 110.95613 * 216.88192 * 18 17 16 41 41 H 1.09000 * 110.98555 * 93.17426 * 18 17 16 42 42 H 1.08997 * 110.03229 * 147.30506 * 22 21 19 43 43 H 1.08993 * 110.03345 * 268.70002 * 22 21 19 44 44 H 1.08998 * 110.85548 * 202.79642 * 23 15 14 45 45 H 1.08996 * 110.86167 * 326.45037 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 -1.3181 5 6 2.1801 3.4858 -1.3183 6 6 1.8210 4.1618 -2.6164 7 1 1.2580 3.6261 -3.3665 8 6 2.2119 5.4636 -2.8470 9 7 1.8990 6.0534 -3.9801 10 14 3.1863 6.3898 -1.5500 11 1 4.6384 6.1760 -1.7751 12 1 2.8794 7.8398 -1.6419 13 1 2.8155 5.8899 -0.2017 14 6 1.9955 -0.7660 1.1375 15 6 2.2110 -2.2211 0.7164 16 6 3.0572 -2.9496 1.7342 17 6 4.5198 -2.6061 1.3547 18 6 4.4376 -1.8131 0.0109 19 6 3.1323 -2.3050 -0.5597 20 1 3.2489 -3.3559 -0.8244 21 8 2.3287 -1.6843 -1.5188 22 6 1.0305 -2.3374 -1.3621 23 6 0.9410 -2.7994 0.1244 24 1 -0.3634 0.6092 -0.8276 25 1 -0.3633 -1.0213 -0.1138 26 1 -0.3634 0.4120 0.9415 27 1 3.0796 1.3444 0.1082 28 1 1.5610 1.9273 0.8311 29 1 2.0656 1.5018 -2.1491 30 1 0.5470 2.0845 -1.4264 31 1 1.7460 4.0419 -0.4874 32 1 3.2643 3.4584 -1.2103 33 1 2.1738 6.9695 -4.1421 34 1 2.9447 -0.3358 1.4570 35 1 1.2834 -0.7280 1.9618 36 1 2.8263 -2.6007 2.7407 37 1 2.9010 -4.0257 1.6584 38 1 5.1037 -3.5164 1.2186 39 1 4.9677 -1.9852 2.1306 40 1 5.2704 -2.0688 -0.6442 41 1 4.4031 -0.7389 0.1930 42 1 0.2289 -1.6326 -1.5829 43 1 0.9634 -3.1990 -2.0262 44 1 0.9409 -3.8871 0.1934 45 1 0.0601 -2.3785 0.6091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687528402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:35 Heat of formation + Delta-G solvation = -13.362790 kcal Electronic energy + Delta-G solvation = -22038.539867 eV Core-core repulsion = 19057.089828 eV Total energy + Delta-G solvation = -2981.450039 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.27827 -36.95382 -35.94649 -33.67483 -32.15732 -31.04876 -28.67178 -27.82454 -27.19928 -25.76545 -23.80701 -22.11452 -21.33789 -20.28048 -19.82712 -19.04988 -16.91349 -16.62026 -15.89156 -15.55357 -15.23728 -14.63348 -14.37261 -14.13852 -13.91886 -13.45930 -13.05268 -12.82457 -12.63173 -12.58072 -12.30900 -11.92533 -11.82726 -11.52731 -11.41940 -11.31136 -10.99235 -10.90033 -10.70333 -10.68166 -10.50562 -10.43971 -10.03770 -9.81064 -9.55062 -9.41636 -9.11964 -9.06637 -8.45853 -7.76432 -5.96468 -3.93216 3.35672 3.42331 3.46616 3.55092 4.19867 4.52004 4.56426 4.62403 4.71696 4.95482 5.01548 5.07583 5.23546 5.27908 5.32397 5.37559 5.39490 5.47032 5.55168 5.61394 5.65733 5.69486 5.76299 5.78743 5.84474 5.91972 5.97699 6.06206 6.12866 6.15162 6.19956 6.23848 6.28412 6.35623 6.70516 6.72912 7.05673 7.29431 7.41094 7.44216 7.53438 7.62018 7.89727 8.64462 9.10099 9.66767 11.17323 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027571 B = 0.004588 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.309321 B = 6101.036293 C = 6408.464945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.006 3.994 2 N -0.515 5.515 3 C 0.060 3.940 4 C -0.094 4.094 5 C -0.013 4.013 6 C -0.514 4.514 7 H 0.071 0.929 8 C 0.064 3.936 9 N -0.906 5.906 10 Si 0.880 3.120 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.267 1.267 14 C 0.073 3.927 15 C -0.116 4.116 16 C -0.102 4.102 17 C -0.119 4.119 18 C -0.107 4.107 19 C 0.080 3.920 20 H 0.038 0.962 21 O -0.313 6.313 22 C 0.057 3.943 23 C -0.135 4.135 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.015 0.985 27 H 0.064 0.936 28 H 0.020 0.980 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.010 0.990 32 H 0.009 0.991 33 H 0.261 0.739 34 H 0.068 0.932 35 H 0.035 0.965 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.906 -20.844 12.995 24.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 N -0.238 5.238 3 C -0.068 4.068 4 C -0.132 4.132 5 C -0.051 4.051 6 C -0.552 4.552 7 H 0.089 0.911 8 C -0.136 4.136 9 N -0.546 5.546 10 Si 0.707 3.293 11 H -0.203 1.203 12 H -0.215 1.215 13 H -0.192 1.192 14 C -0.056 4.056 15 C -0.117 4.117 16 C -0.140 4.140 17 C -0.156 4.156 18 C -0.145 4.145 19 C 0.021 3.979 20 H 0.056 0.944 21 O -0.230 6.230 22 C -0.020 4.020 23 C -0.172 4.172 24 H 0.094 0.906 25 H 0.091 0.909 26 H 0.034 0.966 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.029 0.971 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.138 -20.728 12.310 24.135 hybrid contribution 0.132 0.850 1.502 1.731 sum 1.270 -19.878 13.812 24.239 Atomic orbital electron populations 1.22907 0.88670 1.02068 1.00497 1.61992 1.06646 1.14005 1.41167 1.22296 0.99062 0.86833 0.98564 1.21434 1.00197 0.96503 0.95078 1.19554 0.95605 0.92506 0.97459 1.21168 1.35160 0.97727 1.01164 0.91051 1.25036 0.95773 0.97555 0.95245 1.69926 1.47323 1.13224 1.24123 0.86777 0.80710 0.78829 0.82935 1.20338 1.21516 1.19161 1.22039 0.99494 0.92592 0.91435 1.22230 0.95810 0.96008 0.97618 1.21441 0.94500 0.99784 0.98314 1.22700 0.96356 0.99930 0.96641 1.21808 0.95549 1.01345 0.95758 1.22212 0.93148 0.94878 0.87699 0.94415 1.88658 1.19696 1.60212 1.54463 1.23969 0.87684 0.96285 0.94026 1.22475 0.97926 0.99947 0.96892 0.90644 0.90919 0.96642 0.91735 0.96150 0.91682 0.93131 0.97131 0.97233 0.92878 0.91329 0.94701 0.91592 0.91647 0.91491 0.91389 0.91232 0.90237 0.89013 0.93466 0.91565 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 7.57 60.07 0.45 0.54 16 2 N -0.52 -7.52 1.97 -242.92 -0.48 -8.00 16 3 C 0.06 1.03 4.85 -3.83 -0.02 1.01 16 4 C -0.09 -1.98 5.09 -26.74 -0.14 -2.11 16 5 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 6 C -0.51 -15.22 9.66 -34.44 -0.33 -15.56 16 7 H 0.07 2.27 7.99 -52.48 -0.42 1.86 16 8 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 9 N -0.91 -28.76 13.96 55.43 0.77 -27.98 16 10 Si 0.88 22.41 27.47 -169.99 -4.67 17.74 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.27 -6.54 6.54 56.52 0.37 -6.17 16 14 C 0.07 0.89 3.97 -3.82 -0.02 0.88 16 15 C -0.12 -1.23 1.10 -153.67 -0.17 -1.40 16 16 C -0.10 -0.88 6.05 -26.66 -0.16 -1.05 16 17 C -0.12 -1.02 6.68 -23.95 -0.16 -1.18 16 18 C -0.11 -1.19 6.30 -26.13 -0.16 -1.36 16 19 C 0.08 1.00 3.11 -25.35 -0.08 0.92 16 20 H 0.04 0.45 8.01 -51.93 -0.42 0.03 16 21 O -0.31 -4.77 9.71 -32.04 -0.31 -5.08 16 22 C 0.06 0.68 6.43 38.72 0.25 0.93 16 23 C -0.14 -1.35 5.77 -25.89 -0.15 -1.50 16 24 H 0.07 1.11 6.21 -51.93 -0.32 0.79 16 25 H 0.07 0.82 3.52 -51.93 -0.18 0.63 16 26 H 0.02 0.20 8.00 -51.93 -0.42 -0.22 16 27 H 0.06 1.11 7.79 -51.93 -0.40 0.70 16 28 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 29 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.05 1.06 6.43 -51.92 -0.33 0.73 16 31 H 0.01 0.26 7.20 -51.93 -0.37 -0.11 16 32 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.07 0.86 5.86 -51.93 -0.30 0.55 16 35 H 0.03 0.41 7.67 -51.93 -0.40 0.01 16 36 H 0.07 0.53 7.97 -51.93 -0.41 0.12 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.08 1.01 6.84 -51.93 -0.36 0.65 16 42 H 0.09 1.13 5.66 -51.93 -0.29 0.84 16 43 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.74 5.87 -51.93 -0.30 0.43 16 LS Contribution 325.96 15.07 4.91 4.91 Total: -1.00 -31.86 325.96 -8.54 -40.40 By element: Atomic # 1 Polarization: 4.37 SS G_CDS: -7.88 Total: -3.51 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -0.89 Total: -18.48 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.30 Total: -35.98 kcal Atomic # 8 Polarization: -4.77 SS G_CDS: -0.31 Total: -5.08 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -4.67 Total: 17.74 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.86 -8.54 -40.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687528402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.038 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds