Wall clock time and date at job start Mon Mar 30 2020 07:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99515 * 2 1 4 4 C 1.52990 * 109.47566 * 293.95692 * 3 2 1 5 5 C 1.53002 * 109.47265 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47308 * 180.02562 * 5 4 3 7 7 H 1.08009 * 120.00068 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00431 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00317 * 179.97438 * 8 6 5 10 10 Si 1.86804 * 119.99682 * 359.97438 * 8 6 5 11 11 H 1.48496 * 109.47316 * 90.00262 * 10 8 6 12 12 H 1.48500 * 109.47147 * 210.00183 * 10 8 6 13 13 H 1.48499 * 109.46959 * 330.00184 * 10 8 6 14 14 C 1.46901 * 111.00221 * 123.95772 * 2 1 3 15 15 C 1.53001 * 109.46814 * 91.39099 * 14 2 1 16 16 C 1.51083 * 110.61249 * 166.06018 * 15 14 2 17 17 C 1.54960 * 104.88373 * 276.40658 * 16 15 14 18 18 C 1.56252 * 105.86872 * 353.56124 * 17 16 15 19 19 C 1.50714 * 101.85901 * 335.02369 * 18 17 16 20 20 H 1.08998 * 108.30296 * 292.16874 * 19 18 17 21 21 O 1.39677 * 127.82333 * 158.71567 * 19 18 17 22 22 C 1.46163 * 103.81877 * 198.35290 * 21 19 18 23 23 C 1.51583 * 110.62788 * 306.20514 * 15 14 2 24 24 H 1.08998 * 109.47558 * 53.64105 * 1 2 3 25 25 H 1.08999 * 109.46971 * 173.64077 * 1 2 3 26 26 H 1.09003 * 109.47321 * 293.63362 * 1 2 3 27 27 H 1.08998 * 109.46614 * 173.95523 * 3 2 1 28 28 H 1.09004 * 109.46696 * 53.96279 * 3 2 1 29 29 H 1.08995 * 109.47375 * 300.00134 * 4 3 2 30 30 H 1.09007 * 109.47323 * 60.00053 * 4 3 2 31 31 H 1.09000 * 109.47062 * 299.99579 * 5 4 3 32 32 H 1.08996 * 109.47302 * 59.99964 * 5 4 3 33 33 H 0.97006 * 119.99638 * 179.97438 * 9 8 6 34 34 H 1.08999 * 109.46736 * 211.39145 * 14 2 1 35 35 H 1.08995 * 109.46569 * 331.39354 * 14 2 1 36 36 H 1.09000 * 110.42779 * 35.81585 * 16 15 14 37 37 H 1.09003 * 110.42265 * 158.29865 * 16 15 14 38 38 H 1.09000 * 110.54978 * 234.27056 * 17 16 15 39 39 H 1.09001 * 109.86725 * 112.49136 * 17 16 15 40 40 H 1.08996 * 110.95613 * 216.88192 * 18 17 16 41 41 H 1.09000 * 110.98555 * 93.17426 * 18 17 16 42 42 H 1.08997 * 110.03229 * 147.30506 * 22 21 19 43 43 H 1.08993 * 110.03345 * 268.70002 * 22 21 19 44 44 H 1.08998 * 110.85548 * 202.79642 * 23 15 14 45 45 H 1.08996 * 110.86167 * 326.45037 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6313 2.0575 -1.3181 5 6 2.1801 3.4858 -1.3183 6 6 1.8210 4.1618 -2.6164 7 1 1.2580 3.6261 -3.3665 8 6 2.2119 5.4636 -2.8470 9 7 1.8990 6.0534 -3.9801 10 14 3.1863 6.3898 -1.5500 11 1 4.6384 6.1760 -1.7751 12 1 2.8794 7.8398 -1.6419 13 1 2.8155 5.8899 -0.2017 14 6 1.9955 -0.7660 1.1375 15 6 2.2110 -2.2211 0.7164 16 6 3.0572 -2.9496 1.7342 17 6 4.5198 -2.6061 1.3547 18 6 4.4376 -1.8131 0.0109 19 6 3.1323 -2.3050 -0.5597 20 1 3.2489 -3.3559 -0.8244 21 8 2.3287 -1.6843 -1.5188 22 6 1.0305 -2.3374 -1.3621 23 6 0.9410 -2.7994 0.1244 24 1 -0.3634 0.6092 -0.8276 25 1 -0.3633 -1.0213 -0.1138 26 1 -0.3634 0.4120 0.9415 27 1 3.0796 1.3444 0.1082 28 1 1.5610 1.9273 0.8311 29 1 2.0656 1.5018 -2.1491 30 1 0.5470 2.0845 -1.4264 31 1 1.7460 4.0419 -0.4874 32 1 3.2643 3.4584 -1.2103 33 1 2.1738 6.9695 -4.1421 34 1 2.9447 -0.3358 1.4570 35 1 1.2834 -0.7280 1.9618 36 1 2.8263 -2.6007 2.7407 37 1 2.9010 -4.0257 1.6584 38 1 5.1037 -3.5164 1.2186 39 1 4.9677 -1.9852 2.1306 40 1 5.2704 -2.0688 -0.6442 41 1 4.4031 -0.7389 0.1930 42 1 0.2289 -1.6326 -1.5829 43 1 0.9634 -3.1990 -2.0262 44 1 0.9409 -3.8871 0.1934 45 1 0.0601 -2.3785 0.6091 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687528402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:34 Heat of formation + Delta-G solvation = -32.116695 kcal Electronic energy + Delta-G solvation = -22039.353098 eV Core-core repulsion = 19057.089828 eV Total energy + Delta-G solvation = -2982.263270 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.17499 -38.22032 -36.82309 -35.59175 -33.76955 -32.47113 -29.62748 -28.97798 -28.57181 -26.76338 -25.34696 -22.95423 -22.88160 -21.58854 -21.04252 -19.97236 -18.87350 -17.84381 -16.95180 -16.53608 -16.30320 -16.20901 -15.89159 -15.29515 -15.02776 -14.77540 -14.61784 -14.22830 -13.79189 -13.60402 -13.47115 -13.27041 -13.13346 -12.81062 -12.63348 -12.49329 -12.29192 -12.08353 -12.01965 -11.76689 -11.70960 -11.47298 -11.38936 -11.35900 -11.30227 -10.97195 -10.88321 -10.75849 -10.08977 -8.88357 -8.29344 -6.33409 1.34626 1.36804 1.49141 2.36219 2.68119 3.05651 3.12486 3.75917 3.76835 3.89331 4.12427 4.16422 4.20980 4.28415 4.31998 4.41667 4.47308 4.52787 4.53762 4.59024 4.66530 4.72996 4.77056 4.81866 4.87663 4.94812 4.97079 5.01530 5.03440 5.10199 5.13639 5.20319 5.24843 5.28471 5.36044 5.42690 5.52391 5.55546 5.64214 5.67737 6.23102 6.33266 6.34466 6.41394 6.74515 7.30904 8.87981 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027571 B = 0.004588 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.309321 B = 6101.036293 C = 6408.464945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 N -0.523 5.523 3 C 0.073 3.927 4 C -0.082 4.082 5 C -0.008 4.008 6 C -0.532 4.532 7 H 0.026 0.974 8 C 0.002 3.998 9 N -0.953 5.953 10 Si 0.955 3.045 11 H -0.266 1.266 12 H -0.282 1.282 13 H -0.247 1.247 14 C 0.072 3.928 15 C -0.107 4.107 16 C -0.098 4.098 17 C -0.111 4.111 18 C -0.112 4.112 19 C 0.065 3.935 20 H 0.044 0.956 21 O -0.353 6.353 22 C 0.050 3.950 23 C -0.127 4.127 24 H 0.053 0.947 25 H 0.095 0.905 26 H 0.022 0.978 27 H 0.065 0.935 28 H 0.026 0.974 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.018 0.982 32 H 0.016 0.984 33 H 0.266 0.734 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.081 0.919 43 H 0.056 0.944 44 H 0.086 0.914 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.662 -22.214 16.137 27.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.246 5.246 3 C -0.055 4.055 4 C -0.120 4.120 5 C -0.046 4.046 6 C -0.570 4.570 7 H 0.045 0.955 8 C -0.194 4.194 9 N -0.594 5.594 10 Si 0.778 3.222 11 H -0.191 1.191 12 H -0.207 1.207 13 H -0.170 1.170 14 C -0.056 4.056 15 C -0.108 4.108 16 C -0.135 4.135 17 C -0.148 4.148 18 C -0.149 4.149 19 C 0.006 3.994 20 H 0.062 0.938 21 O -0.271 6.271 22 C -0.026 4.026 23 C -0.165 4.165 24 H 0.072 0.928 25 H 0.113 0.887 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.099 0.901 43 H 0.074 0.926 44 H 0.105 0.895 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.886 -22.129 15.462 27.061 hybrid contribution -0.156 1.234 0.377 1.299 sum 1.730 -20.895 15.839 26.277 Atomic orbital electron populations 1.22921 0.87968 1.03158 0.99894 1.61930 1.07343 1.12396 1.42933 1.22014 0.99229 0.88312 0.95965 1.21216 0.99359 0.94602 0.96793 1.19483 0.96003 0.94230 0.94895 1.21495 1.34868 0.98244 1.02358 0.95526 1.26065 0.96939 0.98588 0.97835 1.70085 1.48834 1.13933 1.26590 0.85593 0.79145 0.77262 0.80235 1.19093 1.20725 1.17043 1.22128 0.99489 0.93199 0.90763 1.22225 0.95888 0.95257 0.97416 1.21453 0.93613 1.00444 0.98032 1.22680 0.96853 1.00248 0.95046 1.21873 0.95176 1.00546 0.97347 1.22433 0.93891 0.94981 0.88118 0.93816 1.88614 1.21260 1.61372 1.55807 1.24084 0.86360 0.96186 0.95987 1.22446 0.97787 1.01206 0.95020 0.92843 0.88673 0.95933 0.91653 0.95621 0.93983 0.93784 0.96403 0.96606 0.92488 0.91527 0.93537 0.90483 0.90108 0.89996 0.90623 0.91398 0.92229 0.90095 0.92569 0.89516 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 7.57 127.69 0.97 1.18 16 2 N -0.52 -14.83 1.97 -922.47 -1.81 -16.64 16 3 C 0.07 2.46 4.85 86.30 0.42 2.88 16 4 C -0.08 -3.51 5.09 30.59 0.16 -3.35 16 5 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 6 C -0.53 -32.53 9.66 25.60 0.25 -32.29 16 7 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 8 C 0.00 0.12 5.47 84.65 0.46 0.58 16 9 N -0.95 -62.09 13.96 21.45 0.30 -61.79 16 10 Si 0.95 45.91 27.47 68.60 1.88 47.80 16 11 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 12 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 13 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 14 C 0.07 1.61 3.97 86.30 0.34 1.95 16 15 C -0.11 -2.01 1.10 -51.64 -0.06 -2.06 16 16 C -0.10 -1.33 6.05 30.64 0.19 -1.14 16 17 C -0.11 -1.58 6.68 32.39 0.22 -1.36 16 18 C -0.11 -2.37 6.30 30.98 0.20 -2.17 16 19 C 0.07 1.53 3.11 31.49 0.10 1.63 16 20 H 0.04 0.96 8.01 -2.39 -0.02 0.94 16 21 O -0.35 -10.74 9.71 -137.57 -1.34 -12.08 16 22 C 0.05 1.15 6.43 72.99 0.47 1.62 16 23 C -0.13 -2.20 5.77 31.14 0.18 -2.02 16 24 H 0.05 1.60 6.21 -2.39 -0.01 1.59 16 25 H 0.10 2.00 3.52 -2.39 -0.01 1.99 16 26 H 0.02 0.54 8.00 -2.39 -0.02 0.52 16 27 H 0.06 2.19 7.79 -2.39 -0.02 2.18 16 28 H 0.03 0.84 8.12 -2.38 -0.02 0.82 16 29 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.04 1.91 6.43 -2.38 -0.02 1.90 16 31 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 32 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 33 H 0.27 16.07 8.31 -92.70 -0.77 15.30 16 34 H 0.07 1.53 5.86 -2.39 -0.01 1.51 16 35 H 0.05 0.95 7.67 -2.39 -0.02 0.93 16 36 H 0.08 0.92 7.97 -2.39 -0.02 0.90 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.06 1.48 6.84 -2.39 -0.02 1.47 16 42 H 0.08 1.98 5.66 -2.39 -0.01 1.97 16 43 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.08 1.34 5.87 -2.39 -0.01 1.33 16 Total: -1.00 -70.72 325.96 3.93 -66.80 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: 0.89 Total: 10.76 kcal Atomic # 6 Polarization: -38.84 SS G_CDS: 4.00 Total: -34.84 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -1.51 Total: -78.43 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -1.34 Total: -12.08 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.80 kcal Total: -70.72 3.93 -66.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687528402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.679 kcal (2) G-P(sol) polarization free energy of solvation -70.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds