Wall clock time and date at job start Mon Mar 30 2020 07:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46900 * 111.00216 * 2 1 4 4 C 1.53001 * 109.46658 * 66.05027 * 3 2 1 5 5 C 1.53008 * 109.46778 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.46778 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.46884 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00379 * 359.97438 * 7 6 5 9 9 C 1.37883 * 120.00119 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99788 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00174 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47178 * 60.00059 * 11 9 7 13 13 H 1.48498 * 109.47415 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.47472 * 300.00245 * 11 9 7 15 15 C 1.46902 * 110.99831 * 236.04934 * 2 1 3 16 16 H 1.08998 * 110.75725 * 61.03770 * 15 2 1 17 17 C 1.54378 * 110.84866 * 297.56128 * 15 2 1 18 18 O 1.43237 * 107.59351 * 220.45246 * 17 15 2 19 19 C 1.43644 * 109.96992 * 358.29010 * 18 17 15 20 20 H 1.08994 * 110.31375 * 265.51555 * 19 18 17 21 21 C 1.53005 * 110.31270 * 143.43822 * 19 18 17 22 22 C 1.52995 * 117.49855 * 130.07420 * 21 19 18 23 23 C 1.52998 * 117.49491 * 61.45215 * 21 19 18 24 24 C 1.54952 * 105.13640 * 24.42878 * 19 18 17 25 25 H 1.09006 * 109.47315 * 54.51951 * 1 2 3 26 26 H 1.09003 * 109.47503 * 174.52078 * 1 2 3 27 27 H 1.09003 * 109.47255 * 294.52341 * 1 2 3 28 28 H 1.08995 * 109.47485 * 306.04996 * 3 2 1 29 29 H 1.08998 * 109.47238 * 186.04297 * 3 2 1 30 30 H 1.08995 * 109.47899 * 60.00054 * 4 3 2 31 31 H 1.09002 * 109.47151 * 299.99774 * 4 3 2 32 32 H 1.08990 * 109.47196 * 59.99739 * 5 4 3 33 33 H 1.08998 * 109.46949 * 299.99166 * 5 4 3 34 34 H 1.09000 * 109.47627 * 59.99378 * 6 5 4 35 35 H 1.09002 * 109.47151 * 299.99493 * 6 5 4 36 36 H 0.96997 * 120.00234 * 179.97438 * 10 9 7 37 37 H 1.09004 * 109.83341 * 339.97127 * 17 15 2 38 38 H 1.09001 * 109.83024 * 100.84729 * 17 15 2 39 39 H 1.09001 * 115.54952 * 275.78801 * 21 19 18 40 40 H 1.08997 * 117.49711 * 0.02562 * 22 21 19 41 41 H 1.08997 * 117.49550 * 145.02184 * 22 21 19 42 42 H 1.09005 * 117.49949 * 214.98061 * 23 21 19 43 43 H 1.09006 * 117.49963 * 0.02562 * 23 21 19 44 44 H 1.09004 * 111.12531 * 205.64230 * 24 19 18 45 45 H 1.09000 * 111.12936 * 81.47166 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0573 1.3184 5 6 2.1793 3.4859 1.3181 6 6 1.8148 4.1720 2.6362 7 6 2.3549 5.5789 2.6363 8 1 2.9037 5.9468 1.7818 9 6 2.1486 6.3966 3.7271 10 7 1.4799 5.9488 4.7674 11 14 2.8186 8.1402 3.7275 12 1 2.2283 8.8976 2.5947 13 1 2.4648 8.8063 5.0067 14 1 4.2960 8.1029 3.5815 15 6 1.9954 -0.7659 -1.1377 16 1 1.6730 -0.3264 -2.0816 17 6 1.5690 -2.2469 -1.0473 18 8 2.6903 -3.0452 -1.4437 19 6 3.7877 -2.1977 -1.8191 20 1 3.7862 -2.0315 -2.8963 21 6 5.1144 -2.8211 -1.3806 22 6 6.2276 -2.9208 -2.4254 23 6 5.4863 -4.1810 -1.9747 24 6 3.5439 -0.8640 -1.0688 25 1 -0.3634 0.5965 -0.8369 26 1 -0.3634 -1.0230 -0.0981 27 1 -0.3634 0.4266 0.9350 28 1 1.5611 1.9274 -0.8308 29 1 3.0797 1.3444 -0.1082 30 1 2.0658 1.5014 2.1492 31 1 0.5472 2.0844 1.4266 32 1 1.7446 4.0416 0.4873 33 1 3.2636 3.4592 1.2097 34 1 2.2491 3.6164 3.4674 35 1 0.7305 4.1988 2.7442 36 1 1.3351 6.5239 5.5350 37 1 1.2868 -2.4887 -0.0225 38 1 0.7277 -2.4310 -1.7155 39 1 5.4077 -2.6252 -0.3492 40 1 6.0149 -2.5419 -3.4250 41 1 7.2536 -2.7903 -2.0816 42 1 6.0248 -4.8798 -1.3343 43 1 4.7861 -4.6315 -2.6782 44 1 4.0138 -0.0291 -1.5888 45 1 3.8881 -0.9253 -0.0364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691655040.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:15 Heat of formation + Delta-G solvation = -36.886832 kcal Electronic energy + Delta-G solvation = -20268.544883 eV Core-core repulsion = 17286.074765 eV Total energy + Delta-G solvation = -2982.470118 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.14708 -37.68762 -36.52161 -34.35208 -32.33864 -31.20534 -29.42096 -28.07214 -26.19991 -24.03544 -23.28642 -22.61173 -21.59391 -20.73187 -20.10620 -19.81240 -17.06941 -16.73729 -16.17477 -15.50317 -15.35949 -14.88342 -14.70348 -14.43811 -14.27063 -13.76663 -13.74580 -12.70821 -12.56951 -12.39565 -12.09855 -11.96713 -11.82240 -11.77549 -11.50836 -11.39069 -11.26415 -11.11569 -10.92892 -10.56882 -10.50643 -10.46421 -10.33956 -10.27472 -9.67663 -9.60621 -9.25449 -9.00950 -8.38948 -8.31733 -5.97117 -3.99446 3.23088 3.34245 3.38573 3.40985 3.74563 3.94547 4.16350 4.39288 4.47970 4.64454 4.75455 4.79823 4.91816 5.05837 5.10857 5.18956 5.28557 5.32864 5.37950 5.38326 5.49505 5.52646 5.59702 5.63923 5.67235 5.73073 5.84473 5.87388 5.89845 5.93988 6.02235 6.13072 6.24594 6.51938 6.80538 6.82895 6.96494 7.03515 7.04642 7.23059 7.71392 7.87601 8.03920 8.46605 9.07882 9.64271 11.14231 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.027442 B = 0.002935 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.099520 B = 9537.533002 C =10252.631108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.530 5.530 3 C 0.055 3.945 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.022 3.978 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.048 3.952 16 H 0.054 0.946 17 C 0.059 3.941 18 O -0.375 6.375 19 C 0.112 3.888 20 H 0.069 0.931 21 C -0.155 4.155 22 C -0.175 4.175 23 C -0.168 4.168 24 C -0.139 4.139 25 H 0.026 0.974 26 H 0.064 0.936 27 H 0.078 0.922 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.014 0.986 36 H 0.261 0.739 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.094 0.906 41 H 0.097 0.903 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.515 -18.589 -14.867 24.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.255 5.255 3 C -0.072 4.072 4 C -0.151 4.151 5 C -0.147 4.147 6 C -0.015 4.015 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.062 4.062 16 H 0.072 0.928 17 C -0.018 4.018 18 O -0.294 6.294 19 C 0.055 3.945 20 H 0.086 0.914 21 C -0.173 4.173 22 C -0.212 4.212 23 C -0.205 4.205 24 C -0.177 4.177 25 H 0.044 0.956 26 H 0.083 0.917 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.101 0.899 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.603 -18.995 -14.268 24.029 hybrid contribution -0.043 1.720 -0.633 1.833 sum 3.561 -17.275 -14.901 23.090 Atomic orbital electron populations 1.22474 0.87266 1.01310 1.01855 1.62132 1.07976 1.14913 1.40491 1.22308 0.99984 0.86366 0.98564 1.21663 1.00911 0.96869 0.95672 1.21597 0.99327 0.92907 1.00875 1.19076 0.96669 0.94620 0.91135 1.21254 1.34822 0.98046 1.01809 0.92850 1.25033 0.95357 0.98464 0.95658 1.69957 1.40948 1.36541 1.06121 0.86673 0.79440 0.84787 0.77175 1.20293 1.21291 1.20255 1.23176 0.95300 0.94504 0.93176 0.92830 1.23144 0.88802 0.88967 1.00842 1.88434 1.22366 1.31754 1.86819 1.22414 0.85725 0.88815 0.97569 0.91360 1.22373 0.94509 1.01375 0.99030 1.22988 0.96776 1.02444 0.99014 1.22834 1.03123 0.90794 1.03722 1.23337 0.94495 0.97180 1.02693 0.95574 0.91737 0.90316 0.95079 0.90814 0.91654 0.92535 0.93743 0.93492 0.96617 0.96764 0.92982 0.90029 0.91798 0.87153 0.88749 0.88437 0.88757 0.88575 0.89948 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.10 60.06 0.55 0.76 16 2 N -0.53 -6.68 4.58 -232.55 -1.07 -7.74 16 3 C 0.05 0.77 4.83 -3.82 -0.02 0.75 16 4 C -0.11 -1.94 5.14 -26.73 -0.14 -2.07 16 5 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 6 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 7 C -0.52 -15.01 9.11 -34.44 -0.31 -15.32 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 11 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 C 0.05 0.52 2.68 -65.76 -0.18 0.34 16 16 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 17 C 0.06 0.63 6.27 37.88 0.24 0.87 16 18 O -0.37 -4.42 10.99 -35.23 -0.39 -4.81 16 19 C 0.11 1.12 3.61 -25.70 -0.09 1.03 16 20 H 0.07 0.63 7.94 -51.93 -0.41 0.22 16 21 C -0.15 -1.42 5.48 -90.62 -0.50 -1.92 16 22 C -0.18 -1.32 10.19 -26.73 -0.27 -1.59 16 23 C -0.17 -1.39 10.20 -26.73 -0.27 -1.66 16 24 C -0.14 -1.44 4.85 -24.47 -0.12 -1.56 16 25 H 0.03 0.29 8.07 -51.93 -0.42 -0.13 16 26 H 0.06 0.62 6.79 -51.93 -0.35 0.27 16 27 H 0.08 0.96 6.74 -51.93 -0.35 0.61 16 28 H 0.03 0.43 8.07 -51.93 -0.42 0.02 16 29 H 0.07 1.00 6.74 -51.93 -0.35 0.65 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.97 6.67 -51.93 -0.35 0.62 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.08 0.91 7.73 -51.93 -0.40 0.51 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.11 1.04 7.97 -51.93 -0.41 0.62 16 40 H 0.09 0.65 8.07 -51.93 -0.42 0.23 16 41 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.78 7.95 -51.93 -0.41 0.37 16 45 H 0.09 1.07 7.93 -51.93 -0.41 0.66 16 LS Contribution 354.91 15.07 5.35 5.35 Total: -1.00 -30.64 354.91 -10.36 -41.00 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -8.48 Total: -3.25 kcal Atomic # 6 Polarization: -19.30 SS G_CDS: -1.49 Total: -20.79 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: -0.33 Total: -34.36 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.39 Total: -4.81 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.64 -10.36 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691655040.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.108 kcal (2) G-P(sol) polarization free energy of solvation -30.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds