Wall clock time and date at job start Mon Mar 30 2020 07:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99909 * 2 1 4 4 C 1.52992 * 109.47518 * 66.04226 * 3 2 1 5 5 C 1.52997 * 109.47465 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47535 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.46997 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00319 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99717 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 C 1.46895 * 111.00304 * 236.04035 * 2 1 3 16 16 H 1.08999 * 110.80714 * 67.58248 * 15 2 1 17 17 C 1.54991 * 110.90872 * 191.25350 * 15 2 1 18 18 O 1.44380 * 103.49282 * 155.22438 * 17 15 2 19 19 C 1.43748 * 106.97263 * 319.93221 * 18 17 15 20 20 H 1.08992 * 109.88594 * 267.08899 * 19 18 17 21 21 C 1.53000 * 109.99759 * 146.00771 * 19 18 17 22 22 C 1.53007 * 117.49446 * 130.84625 * 21 19 18 23 23 C 1.53003 * 117.50031 * 62.18736 * 21 19 18 24 24 C 1.54103 * 107.29026 * 26.51919 * 19 18 17 25 25 H 1.09003 * 109.46297 * 60.00462 * 1 2 3 26 26 H 1.08998 * 109.46883 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47104 * 300.00339 * 1 2 3 28 28 H 1.08997 * 109.47236 * 306.03722 * 3 2 1 29 29 H 1.09004 * 109.46827 * 186.04543 * 3 2 1 30 30 H 1.09005 * 109.47124 * 59.99805 * 4 3 2 31 31 H 1.09004 * 109.47330 * 300.00008 * 4 3 2 32 32 H 1.09005 * 109.46889 * 59.99930 * 5 4 3 33 33 H 1.09002 * 109.47401 * 300.00018 * 5 4 3 34 34 H 1.09005 * 109.46767 * 60.00250 * 6 5 4 35 35 H 1.09002 * 109.47113 * 300.00590 * 6 5 4 36 36 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 37 37 H 1.08999 * 110.61660 * 273.72450 * 17 15 2 38 38 H 1.08996 * 110.62011 * 36.72228 * 17 15 2 39 39 H 1.08998 * 115.55539 * 276.51270 * 21 19 18 40 40 H 1.08995 * 117.50268 * 359.97438 * 22 21 19 41 41 H 1.09002 * 117.49466 * 145.02100 * 22 21 19 42 42 H 1.09002 * 117.49745 * 214.97404 * 23 21 19 43 43 H 1.08996 * 117.49681 * 359.97383 * 23 21 19 44 44 H 1.08998 * 110.48486 * 239.28470 * 24 19 18 45 45 H 1.09000 * 110.48565 * 116.64440 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3181 5 6 2.1803 3.4857 1.3184 6 6 1.8157 4.1720 2.6363 7 6 2.3569 5.5784 2.6367 8 1 2.9056 5.9462 1.7822 9 6 2.1515 6.3958 3.7280 10 7 2.6233 7.6234 3.7281 11 14 1.2030 5.7595 5.2061 12 1 -0.2425 6.0500 5.0293 13 1 1.4020 4.2929 5.3280 14 1 1.6958 6.4297 6.4363 15 6 1.9956 -0.7661 -1.1374 16 1 1.7716 -0.2645 -2.0789 17 6 3.5195 -1.0046 -0.9858 18 8 3.7538 -2.1947 -1.7689 19 6 2.6496 -3.0820 -1.5244 20 1 2.8942 -3.7623 -0.7087 21 6 2.3302 -3.8808 -2.7896 22 6 2.1793 -5.3968 -2.6486 23 6 3.4177 -4.8108 -3.3314 24 6 1.4394 -2.2108 -1.1353 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.5613 1.9273 -0.8310 29 1 3.0798 1.3444 -0.1082 30 1 2.0657 1.5016 2.1491 31 1 0.5471 2.0846 1.4264 32 1 1.7463 4.0418 0.4873 33 1 3.2646 3.4583 1.2104 34 1 2.2494 3.6160 3.4676 35 1 0.7313 4.1994 2.7439 36 1 2.4785 8.1985 4.4957 37 1 4.0818 -0.1626 -1.3895 38 1 3.7792 -1.1753 0.0589 39 1 1.6917 -3.3769 -3.5152 40 1 2.3079 -5.8252 -1.6546 41 1 1.4418 -5.8902 -3.2817 42 1 3.4943 -4.9189 -4.4133 43 1 4.3608 -4.8532 -2.7866 44 1 1.0795 -2.4797 -0.1422 45 1 0.6425 -2.3140 -1.8718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691655047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:18 Heat of formation + Delta-G solvation = -32.743602 kcal Electronic energy + Delta-G solvation = -20250.204657 eV Core-core repulsion = 17267.914203 eV Total energy + Delta-G solvation = -2982.290454 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.20244 -37.75495 -36.55559 -34.50239 -32.40395 -31.13419 -29.27095 -28.87996 -26.10126 -24.03630 -23.42084 -22.68713 -21.28723 -20.80774 -20.28433 -19.96696 -16.97179 -16.67931 -16.59212 -15.76470 -15.28505 -14.97676 -14.73778 -14.34134 -14.17459 -13.97894 -13.61376 -13.03463 -12.69691 -12.48803 -12.39436 -12.04053 -11.88090 -11.84347 -11.61689 -11.43769 -11.28657 -11.20451 -10.99196 -10.73897 -10.62024 -10.45301 -10.34041 -9.87455 -9.84598 -9.66084 -9.47494 -9.13423 -8.51082 -8.44160 -6.01655 -3.99172 3.19039 3.32543 3.39849 3.44488 3.69483 3.99301 4.16451 4.27272 4.47891 4.54617 4.68613 4.78023 4.86765 4.99420 5.09768 5.14312 5.20202 5.28301 5.30109 5.32808 5.43691 5.49425 5.55312 5.57918 5.65873 5.67446 5.76160 5.77825 5.78934 5.87037 5.89733 6.02633 6.10131 6.38298 6.62892 6.67178 6.77513 6.90167 6.98884 7.08480 7.35668 7.48876 7.83505 8.57585 9.03700 9.61320 11.11947 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.048618 B = 0.002749 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.775782 B =10182.185180 C =10424.564501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.532 5.532 3 C 0.053 3.947 4 C -0.116 4.116 5 C -0.102 4.102 6 C -0.013 4.013 7 C -0.519 4.519 8 H 0.070 0.930 9 C 0.064 3.936 10 N -0.905 5.905 11 Si 0.881 3.119 12 H -0.278 1.278 13 H -0.265 1.265 14 H -0.288 1.288 15 C 0.049 3.951 16 H 0.056 0.944 17 C 0.055 3.945 18 O -0.370 6.370 19 C 0.109 3.891 20 H 0.069 0.931 21 C -0.156 4.156 22 C -0.175 4.175 23 C -0.168 4.168 24 C -0.141 4.141 25 H 0.024 0.976 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.034 0.966 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.015 0.985 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.990 -25.264 -12.457 28.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.257 5.257 3 C -0.074 4.074 4 C -0.154 4.154 5 C -0.140 4.140 6 C -0.051 4.051 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.137 4.137 10 N -0.545 5.545 11 Si 0.708 3.292 12 H -0.204 1.204 13 H -0.190 1.190 14 H -0.214 1.214 15 C -0.060 4.060 16 H 0.074 0.926 17 C -0.022 4.022 18 O -0.288 6.288 19 C 0.051 3.949 20 H 0.087 0.913 21 C -0.175 4.175 22 C -0.212 4.212 23 C -0.205 4.205 24 C -0.179 4.179 25 H 0.043 0.957 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.052 0.948 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.028 0.972 36 H 0.072 0.928 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.106 0.894 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.633 -25.385 -12.064 28.229 hybrid contribution -1.016 0.387 0.181 1.102 sum -3.649 -24.998 -11.883 27.918 Atomic orbital electron populations 1.22460 0.87277 1.01742 1.01303 1.62115 1.08084 1.14703 1.40814 1.22290 1.00010 0.86636 0.98481 1.21701 1.00834 0.96892 0.95962 1.21427 0.99989 0.92642 0.99922 1.19563 0.95990 0.96313 0.93219 1.21189 1.35186 0.95745 1.03627 0.91139 1.25061 0.95453 0.94726 0.98462 1.69925 1.46499 1.07158 1.30891 0.86756 0.80325 0.79644 0.82429 1.20388 1.18952 1.21445 1.23192 0.95657 0.94118 0.93042 0.92618 1.23576 0.94154 0.87756 0.96699 1.88907 1.43343 1.28501 1.68081 1.22194 0.86201 0.91681 0.94776 0.91298 1.22432 1.03676 0.91798 0.99564 1.23003 1.01099 0.94545 1.02575 1.22859 0.93885 1.03239 1.00521 1.23040 0.98023 0.93727 1.03130 0.95700 0.91554 0.90527 0.94792 0.90792 0.91639 0.92517 0.93103 0.92803 0.96649 0.97250 0.92812 0.88940 0.90807 0.87527 0.88632 0.88550 0.88795 0.88422 0.89389 0.90523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.05 60.07 0.54 0.76 16 2 N -0.53 -6.29 4.61 -232.48 -1.07 -7.37 16 3 C 0.05 0.71 4.86 -3.83 -0.02 0.69 16 4 C -0.12 -1.84 5.14 -26.74 -0.14 -1.98 16 5 C -0.10 -2.00 5.15 -26.73 -0.14 -2.14 16 6 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 7 C -0.52 -15.08 9.66 -34.44 -0.33 -15.41 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 10 N -0.91 -28.34 13.96 55.43 0.77 -27.57 16 11 Si 0.88 22.07 27.47 -169.99 -4.67 17.40 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 C 0.05 0.52 2.81 -65.71 -0.18 0.33 16 16 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 17 C 0.06 0.60 6.39 38.21 0.24 0.85 16 18 O -0.37 -4.31 11.15 -35.23 -0.39 -4.70 16 19 C 0.11 1.03 3.60 -26.15 -0.09 0.93 16 20 H 0.07 0.63 7.93 -51.93 -0.41 0.22 16 21 C -0.16 -1.28 5.28 -90.61 -0.48 -1.76 16 22 C -0.18 -1.17 10.19 -26.69 -0.27 -1.44 16 23 C -0.17 -1.29 10.21 -26.69 -0.27 -1.56 16 24 C -0.14 -1.26 5.11 -25.20 -0.13 -1.39 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.60 6.52 -51.93 -0.34 0.26 16 27 H 0.08 0.86 6.47 -51.93 -0.34 0.53 16 28 H 0.03 0.46 8.12 -51.93 -0.42 0.03 16 29 H 0.07 0.96 6.93 -51.93 -0.36 0.60 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.88 6.55 -51.93 -0.34 0.54 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.02 0.37 7.20 -51.93 -0.37 0.00 16 35 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 36 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 37 H 0.09 0.97 7.83 -51.93 -0.41 0.56 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.11 0.85 7.91 -51.93 -0.41 0.43 16 40 H 0.10 0.59 8.07 -51.93 -0.42 0.17 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.09 0.79 7.35 -51.93 -0.38 0.40 16 45 H 0.08 0.61 7.55 -51.93 -0.39 0.22 16 LS Contribution 350.45 15.07 5.28 5.28 Total: -1.00 -31.07 350.45 -9.93 -41.01 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -8.38 Total: -3.28 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -1.48 Total: -20.76 kcal Atomic # 7 Polarization: -34.64 SS G_CDS: -0.30 Total: -34.94 kcal Atomic # 8 Polarization: -4.31 SS G_CDS: -0.39 Total: -4.70 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.40 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.07 -9.93 -41.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691655047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.262 kcal (2) G-P(sol) polarization free energy of solvation -31.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds