Wall clock time and date at job start Mon Mar 30 2020 07:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46898 * 110.99909 * 2 1 4 4 C 1.52992 * 109.47518 * 66.04226 * 3 2 1 5 5 C 1.52997 * 109.47465 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47535 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.46997 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00319 * 0.02562 * 7 6 5 9 9 C 1.37885 * 119.99717 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99913 * 180.02562 * 9 7 6 11 11 Si 1.86798 * 119.99766 * 0.02562 * 9 7 6 12 12 H 1.48500 * 109.47353 * 269.99586 * 11 9 7 13 13 H 1.48501 * 109.47293 * 30.00037 * 11 9 7 14 14 H 1.48504 * 109.46680 * 149.99835 * 11 9 7 15 15 C 1.46895 * 111.00304 * 236.04035 * 2 1 3 16 16 H 1.08999 * 110.80714 * 67.58248 * 15 2 1 17 17 C 1.54991 * 110.90872 * 191.25350 * 15 2 1 18 18 O 1.44380 * 103.49282 * 155.22438 * 17 15 2 19 19 C 1.43748 * 106.97263 * 319.93221 * 18 17 15 20 20 H 1.08992 * 109.88594 * 267.08899 * 19 18 17 21 21 C 1.53000 * 109.99759 * 146.00771 * 19 18 17 22 22 C 1.53007 * 117.49446 * 130.84625 * 21 19 18 23 23 C 1.53003 * 117.50031 * 62.18736 * 21 19 18 24 24 C 1.54103 * 107.29026 * 26.51919 * 19 18 17 25 25 H 1.09003 * 109.46297 * 60.00462 * 1 2 3 26 26 H 1.08998 * 109.46883 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47104 * 300.00339 * 1 2 3 28 28 H 1.08997 * 109.47236 * 306.03722 * 3 2 1 29 29 H 1.09004 * 109.46827 * 186.04543 * 3 2 1 30 30 H 1.09005 * 109.47124 * 59.99805 * 4 3 2 31 31 H 1.09004 * 109.47330 * 300.00008 * 4 3 2 32 32 H 1.09005 * 109.46889 * 59.99930 * 5 4 3 33 33 H 1.09002 * 109.47401 * 300.00018 * 5 4 3 34 34 H 1.09005 * 109.46767 * 60.00250 * 6 5 4 35 35 H 1.09002 * 109.47113 * 300.00590 * 6 5 4 36 36 H 0.97001 * 119.99646 * 179.97438 * 10 9 7 37 37 H 1.08999 * 110.61660 * 273.72450 * 17 15 2 38 38 H 1.08996 * 110.62011 * 36.72228 * 17 15 2 39 39 H 1.08998 * 115.55539 * 276.51270 * 21 19 18 40 40 H 1.08995 * 117.50268 * 359.97438 * 22 21 19 41 41 H 1.09002 * 117.49466 * 145.02100 * 22 21 19 42 42 H 1.09002 * 117.49745 * 214.97404 * 23 21 19 43 43 H 1.08996 * 117.49681 * 359.97383 * 23 21 19 44 44 H 1.08998 * 110.48486 * 239.28470 * 24 19 18 45 45 H 1.09000 * 110.48565 * 116.64440 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 1.3181 5 6 2.1803 3.4857 1.3184 6 6 1.8157 4.1720 2.6363 7 6 2.3569 5.5784 2.6367 8 1 2.9056 5.9462 1.7822 9 6 2.1515 6.3958 3.7280 10 7 2.6233 7.6234 3.7281 11 14 1.2030 5.7595 5.2061 12 1 -0.2425 6.0500 5.0293 13 1 1.4020 4.2929 5.3280 14 1 1.6958 6.4297 6.4363 15 6 1.9956 -0.7661 -1.1374 16 1 1.7716 -0.2645 -2.0789 17 6 3.5195 -1.0046 -0.9858 18 8 3.7538 -2.1947 -1.7689 19 6 2.6496 -3.0820 -1.5244 20 1 2.8942 -3.7623 -0.7087 21 6 2.3302 -3.8808 -2.7896 22 6 2.1793 -5.3968 -2.6486 23 6 3.4177 -4.8108 -3.3314 24 6 1.4394 -2.2108 -1.1353 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.5613 1.9273 -0.8310 29 1 3.0798 1.3444 -0.1082 30 1 2.0657 1.5016 2.1491 31 1 0.5471 2.0846 1.4264 32 1 1.7463 4.0418 0.4873 33 1 3.2646 3.4583 1.2104 34 1 2.2494 3.6160 3.4676 35 1 0.7313 4.1994 2.7439 36 1 2.4785 8.1985 4.4957 37 1 4.0818 -0.1626 -1.3895 38 1 3.7792 -1.1753 0.0589 39 1 1.6917 -3.3769 -3.5152 40 1 2.3079 -5.8252 -1.6546 41 1 1.4418 -5.8902 -3.2817 42 1 3.4943 -4.9189 -4.4133 43 1 4.3608 -4.8532 -2.7866 44 1 1.0795 -2.4797 -0.1422 45 1 0.6425 -2.3140 -1.8718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691655047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:17 Heat of formation + Delta-G solvation = -51.475091 kcal Electronic energy + Delta-G solvation = -20251.016916 eV Core-core repulsion = 17267.914203 eV Total energy + Delta-G solvation = -2983.102713 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.99591 -38.62657 -37.33290 -36.12412 -34.31081 -32.24524 -30.43951 -29.98195 -27.39120 -25.38793 -24.26412 -23.24586 -22.59932 -21.65204 -21.59135 -21.06710 -18.85717 -17.75060 -17.43677 -16.66071 -16.36946 -16.15267 -15.88953 -15.61361 -15.34382 -14.81694 -14.70858 -14.53312 -14.17947 -13.71651 -13.49510 -13.24312 -13.18555 -12.81695 -12.53387 -12.39719 -12.36526 -12.25994 -12.19653 -11.90608 -11.84479 -11.68770 -11.34445 -11.27624 -11.23413 -11.16321 -10.92260 -10.75945 -10.68004 -9.36464 -8.29312 -6.33354 1.35896 1.38290 1.50846 2.36870 2.48413 2.87979 3.05978 3.28942 3.45030 3.56065 3.88514 4.01965 4.02544 4.11104 4.13890 4.18936 4.28475 4.40675 4.46868 4.51964 4.53367 4.55837 4.67384 4.75711 4.79358 4.79683 4.83728 4.89655 4.94012 5.01244 5.05921 5.09934 5.15464 5.18610 5.25466 5.27431 5.28261 5.58252 5.65440 5.68914 5.84629 6.03352 6.14085 6.29826 6.75023 7.31350 8.87645 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.048618 B = 0.002749 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.775782 B =10182.185180 C =10424.564501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.536 5.536 3 C 0.060 3.940 4 C -0.103 4.103 5 C -0.095 4.095 6 C -0.012 4.012 7 C -0.534 4.534 8 H 0.029 0.971 9 C -0.001 4.001 10 N -0.953 5.953 11 Si 0.955 3.045 12 H -0.266 1.266 13 H -0.246 1.246 14 H -0.284 1.284 15 C 0.051 3.949 16 H 0.053 0.947 17 C 0.054 3.946 18 O -0.388 6.388 19 C 0.106 3.894 20 H 0.070 0.930 21 C -0.167 4.167 22 C -0.160 4.160 23 C -0.178 4.178 24 C -0.132 4.132 25 H 0.026 0.974 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.033 0.967 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.019 0.981 35 H 0.017 0.983 36 H 0.266 0.734 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.111 0.889 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.635 -27.764 -12.100 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.261 5.261 3 C -0.068 4.068 4 C -0.141 4.141 5 C -0.133 4.133 6 C -0.049 4.049 7 C -0.572 4.572 8 H 0.047 0.953 9 C -0.197 4.197 10 N -0.594 5.594 11 Si 0.778 3.222 12 H -0.191 1.191 13 H -0.169 1.169 14 H -0.210 1.210 15 C -0.058 4.058 16 H 0.071 0.929 17 C -0.023 4.023 18 O -0.307 6.307 19 C 0.048 3.952 20 H 0.088 0.912 21 C -0.186 4.186 22 C -0.197 4.197 23 C -0.215 4.215 24 C -0.170 4.170 25 H 0.044 0.956 26 H 0.103 0.897 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.037 0.963 35 H 0.036 0.964 36 H 0.075 0.925 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.119 0.881 41 H 0.129 0.871 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.110 0.890 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.282 -27.908 -11.726 30.573 hybrid contribution -0.432 1.200 -0.010 1.276 sum -4.713 -26.707 -11.736 29.551 Atomic orbital electron populations 1.22516 0.86361 1.02940 1.01089 1.62071 1.08934 1.13555 1.41538 1.22113 1.00228 0.87554 0.96912 1.21510 1.00935 0.94264 0.97395 1.21297 0.99803 0.94841 0.97393 1.19535 0.96047 0.93675 0.95661 1.21571 1.34830 0.98384 1.02434 0.95252 1.26102 0.96636 0.94820 1.02169 1.70084 1.48288 1.08825 1.32236 0.85592 0.78951 0.79951 0.77751 1.19076 1.16893 1.20990 1.23172 0.95398 0.94869 0.92357 0.92899 1.23563 0.94618 0.87751 0.96340 1.88893 1.44558 1.28979 1.68266 1.22319 0.85765 0.91558 0.95547 0.91198 1.22449 1.04234 0.92611 0.99270 1.23087 1.00416 0.93284 1.02920 1.22903 0.93847 1.03715 1.01016 1.22995 0.98056 0.92225 1.03723 0.95553 0.89713 0.91058 0.94885 0.90682 0.91683 0.91828 0.93651 0.93426 0.96302 0.96421 0.92537 0.88986 0.91327 0.87234 0.88139 0.87069 0.88072 0.89378 0.89044 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.05 127.69 1.16 1.51 16 2 N -0.54 -11.60 4.61 -889.43 -4.10 -15.71 16 3 C 0.06 1.50 4.86 86.30 0.42 1.92 16 4 C -0.10 -3.09 5.14 30.59 0.16 -2.94 16 5 C -0.10 -3.69 5.15 30.59 0.16 -3.53 16 6 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 7 C -0.53 -31.60 9.66 25.60 0.25 -31.36 16 8 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 9 C 0.00 -0.06 5.47 84.66 0.46 0.40 16 10 N -0.95 -61.00 13.96 21.45 0.30 -60.70 16 11 Si 0.95 44.96 27.47 68.60 1.88 46.85 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 14 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 15 C 0.05 0.99 2.81 46.22 0.13 1.12 16 16 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 17 C 0.05 1.14 6.39 72.66 0.46 1.60 16 18 O -0.39 -8.74 11.15 -148.98 -1.66 -10.40 16 19 C 0.11 1.83 3.60 30.97 0.11 1.94 16 20 H 0.07 1.18 7.93 -2.39 -0.02 1.16 16 21 C -0.17 -2.45 5.28 -10.79 -0.06 -2.51 16 22 C -0.16 -1.78 10.19 30.62 0.31 -1.47 16 23 C -0.18 -2.50 10.21 30.62 0.31 -2.19 16 24 C -0.13 -2.07 5.11 31.59 0.16 -1.90 16 25 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.08 1.27 6.52 -2.39 -0.02 1.26 16 27 H 0.07 1.42 6.47 -2.39 -0.02 1.41 16 28 H 0.03 0.84 8.12 -2.39 -0.02 0.82 16 29 H 0.07 1.87 6.93 -2.38 -0.02 1.85 16 30 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.06 1.83 6.55 -2.38 -0.02 1.81 16 32 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.02 0.88 7.20 -2.38 -0.02 0.86 16 35 H 0.02 0.80 7.57 -2.39 -0.02 0.79 16 36 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 37 H 0.09 1.89 7.83 -2.39 -0.02 1.87 16 38 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.11 1.53 7.91 -2.39 -0.02 1.51 16 40 H 0.10 1.02 8.07 -2.39 -0.02 1.00 16 41 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.09 1.39 7.35 -2.39 -0.02 1.37 16 45 H 0.09 1.18 7.55 -2.39 -0.02 1.16 16 Total: -1.00 -67.11 350.45 1.44 -65.66 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 0.87 Total: 12.14 kcal Atomic # 6 Polarization: -42.00 SS G_CDS: 4.16 Total: -37.84 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -3.80 Total: -76.40 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -1.66 Total: -10.40 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.88 Total: 46.85 kcal Total: -67.11 1.44 -65.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691655047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.190 kcal (2) G-P(sol) polarization free energy of solvation -67.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds