Wall clock time and date at job start Mon Mar 30 2020 07:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00043 * 2 1 4 4 C 1.53006 * 109.47111 * 293.95296 * 3 2 1 5 5 C 1.52996 * 109.47325 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46972 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46814 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00372 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00023 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99630 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00401 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47197 * 59.99850 * 11 9 7 13 13 H 1.48502 * 109.47252 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47218 * 300.00465 * 11 9 7 15 15 C 1.46905 * 111.00297 * 123.94777 * 2 1 3 16 16 H 1.08996 * 110.80432 * 292.42229 * 15 2 1 17 17 C 1.54992 * 110.90978 * 168.74860 * 15 2 1 18 18 O 1.44567 * 103.58723 * 204.86241 * 17 15 2 19 19 C 1.43741 * 106.87128 * 39.87924 * 18 17 15 20 20 H 1.09005 * 109.87640 * 93.17337 * 19 18 17 21 21 C 1.53003 * 109.88165 * 214.17152 * 19 18 17 22 22 C 1.53001 * 117.51964 * 229.57840 * 21 19 18 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 19 24 24 C 1.54096 * 107.42113 * 333.67158 * 19 18 17 25 25 H 1.09002 * 109.46978 * 296.04962 * 1 2 3 26 26 H 1.08996 * 109.47020 * 56.04632 * 1 2 3 27 27 H 1.08999 * 109.47158 * 176.04961 * 1 2 3 28 28 H 1.09000 * 109.47825 * 53.95062 * 3 2 1 29 29 H 1.08995 * 109.47487 * 173.95619 * 3 2 1 30 30 H 1.09000 * 109.47219 * 300.00113 * 4 3 2 31 31 H 1.09000 * 109.47110 * 59.99849 * 4 3 2 32 32 H 1.08999 * 109.47068 * 299.99590 * 5 4 3 33 33 H 1.08995 * 109.47530 * 60.00165 * 5 4 3 34 34 H 1.08999 * 109.46798 * 299.99643 * 6 5 4 35 35 H 1.09000 * 109.47378 * 59.99718 * 6 5 4 36 36 H 0.96996 * 119.99727 * 180.02562 * 10 9 7 37 37 H 1.09001 * 110.61840 * 323.28951 * 17 15 2 38 38 H 1.09000 * 110.61403 * 86.12312 * 17 15 2 39 39 H 1.09002 * 115.54973 * 83.87623 * 21 19 18 40 40 H 1.09001 * 117.49733 * 214.97413 * 22 21 19 41 41 H 1.08995 * 117.49577 * 359.97438 * 22 21 19 42 42 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 43 43 H 1.09004 * 117.51638 * 107.47550 * 23 22 21 44 44 H 1.09003 * 110.48506 * 120.62791 * 24 19 18 45 45 H 1.08999 * 110.49050 * 243.14441 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1803 3.4856 -1.3186 6 6 1.8157 4.1717 -2.6367 7 6 2.3558 5.5786 -2.6367 8 1 2.9045 5.9465 -1.7823 9 6 2.1503 6.3960 -3.7280 10 7 1.4824 5.9478 -4.7687 11 14 2.8202 8.1396 -3.7284 12 1 4.2975 8.1023 -3.5813 13 1 2.4674 8.8052 -5.0082 14 1 2.2291 8.8973 -2.5963 15 6 1.9955 -0.7659 1.1377 16 1 1.7715 -0.2642 2.0790 17 6 3.5195 -1.0044 0.9861 18 8 3.7560 -2.1970 1.7682 19 6 2.6495 -3.0816 1.5250 20 1 2.8926 -3.7639 0.7103 21 6 2.3314 -3.8776 2.7924 22 6 2.1870 -5.3947 2.6568 23 6 3.4217 -4.8017 3.3386 24 6 1.4394 -2.2107 1.1357 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 1.5611 1.9275 0.8308 29 1 3.0797 1.3445 0.1082 30 1 2.0658 1.5015 -2.1492 31 1 0.5472 2.0845 -1.4266 32 1 1.7463 4.0418 -0.4878 33 1 3.2645 3.4582 -1.2106 34 1 2.2494 3.6157 -3.4678 35 1 0.7314 4.1991 -2.7443 36 1 1.3382 6.5227 -5.5365 37 1 3.7792 -1.1751 -0.0586 38 1 4.0817 -0.1611 1.3873 39 1 1.6900 -3.3736 3.5154 40 1 1.4506 -5.8888 3.2906 41 1 2.3183 -5.8260 1.6644 42 1 4.3655 -4.8428 2.7948 43 1 3.4978 -4.9053 4.4210 44 1 1.0796 -2.4796 0.1425 45 1 0.6416 -2.3155 1.8709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691655058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:21 Heat of formation + Delta-G solvation = -36.130620 kcal Electronic energy + Delta-G solvation = -20196.156843 eV Core-core repulsion = 17213.719516 eV Total energy + Delta-G solvation = -2982.437326 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.15054 -37.70233 -36.50294 -34.37811 -32.41217 -31.00693 -29.19621 -28.50505 -25.90630 -24.03080 -23.41913 -22.66508 -21.41419 -20.80136 -20.21217 -19.95548 -16.88937 -16.63362 -16.18514 -15.71205 -15.23142 -14.89992 -14.72249 -14.37052 -14.22642 -13.95064 -13.58998 -12.91961 -12.54152 -12.42748 -12.16669 -11.89558 -11.84528 -11.75922 -11.51615 -11.30511 -11.17079 -11.12544 -10.91265 -10.61291 -10.52533 -10.47054 -10.32018 -10.28863 -9.83819 -9.59875 -9.24901 -9.00513 -8.37684 -8.31161 -5.96657 -3.98868 3.22406 3.34890 3.39089 3.41686 3.74320 4.03483 4.19917 4.31348 4.48530 4.57496 4.71559 4.81463 4.90670 5.04432 5.13524 5.19910 5.24514 5.32468 5.35951 5.38842 5.50391 5.55507 5.58987 5.63465 5.69759 5.71579 5.80068 5.82082 5.87087 5.92342 5.95638 6.14169 6.23343 6.51579 6.67897 6.81465 6.97145 7.04339 7.06969 7.23936 7.71866 7.87949 8.04366 8.47143 9.08416 9.64797 11.14653 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.052922 B = 0.002607 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.956587 B =10735.976147 C =11023.131408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.531 5.531 3 C 0.053 3.947 4 C -0.113 4.113 5 C -0.109 4.109 6 C 0.022 3.978 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.055 3.945 10 N -0.896 5.896 11 Si 0.892 3.108 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.050 3.950 16 H 0.055 0.945 17 C 0.055 3.945 18 O -0.370 6.370 19 C 0.109 3.891 20 H 0.069 0.931 21 C -0.157 4.157 22 C -0.175 4.175 23 C -0.168 4.168 24 C -0.141 4.141 25 H 0.023 0.977 26 H 0.078 0.922 27 H 0.066 0.934 28 H 0.032 0.968 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.044 0.956 33 H 0.047 0.953 34 H 0.016 0.984 35 H 0.014 0.986 36 H 0.260 0.740 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.368 -21.097 14.693 25.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.257 5.257 3 C -0.074 4.074 4 C -0.151 4.151 5 C -0.148 4.148 6 C -0.015 4.015 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.146 4.146 10 N -0.536 5.536 11 Si 0.720 3.280 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C -0.060 4.060 16 H 0.073 0.927 17 C -0.022 4.022 18 O -0.289 6.289 19 C 0.051 3.949 20 H 0.087 0.913 21 C -0.175 4.175 22 C -0.212 4.212 23 C -0.205 4.205 24 C -0.179 4.179 25 H 0.042 0.958 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.050 0.950 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.116 0.884 43 H 0.112 0.888 44 H 0.106 0.894 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.091 -21.327 14.229 25.638 hybrid contribution -0.200 1.522 0.550 1.631 sum -0.291 -19.804 14.779 24.713 Atomic orbital electron populations 1.22461 0.87243 1.01962 1.01115 1.62120 1.08116 1.14738 1.40687 1.22306 0.99836 0.86618 0.98641 1.21674 1.00886 0.96898 0.95651 1.21600 0.99368 0.92904 1.00878 1.19079 0.96667 0.94632 0.91143 1.21252 1.34799 0.98038 1.01784 0.92838 1.25039 0.95377 0.98480 0.95666 1.69961 1.41002 1.36530 1.06080 0.86667 0.79445 0.84772 0.77158 1.20254 1.21308 1.20294 1.23179 0.95591 0.94140 0.93042 0.92697 1.23599 0.94189 0.87700 0.96730 1.88941 1.43105 1.28497 1.68327 1.22193 0.86205 0.91723 0.94740 0.91288 1.22440 1.03622 0.91860 0.99565 1.22990 1.01130 0.94502 1.02599 1.22845 0.93904 1.03285 1.00474 1.23032 0.97965 0.93731 1.03175 0.95823 0.90349 0.91574 0.94976 0.90953 0.91645 0.92492 0.93718 0.93446 0.96611 0.96773 0.93000 0.90782 0.88996 0.87541 0.88566 0.88623 0.88432 0.88821 0.89364 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.06 60.06 0.54 0.77 16 2 N -0.53 -6.64 4.61 -232.47 -1.07 -7.71 16 3 C 0.05 0.75 4.86 -3.82 -0.02 0.73 16 4 C -0.11 -1.92 5.15 -26.73 -0.14 -2.06 16 5 C -0.11 -2.26 5.15 -26.73 -0.14 -2.39 16 6 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.06 1.61 5.46 -17.81 -0.10 1.52 16 10 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 11 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C 0.05 0.55 2.81 -65.70 -0.18 0.36 16 16 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 17 C 0.05 0.62 6.39 38.21 0.24 0.86 16 18 O -0.37 -4.43 11.15 -35.23 -0.39 -4.82 16 19 C 0.11 1.06 3.60 -26.16 -0.09 0.97 16 20 H 0.07 0.65 7.93 -51.93 -0.41 0.24 16 21 C -0.16 -1.33 5.28 -90.61 -0.48 -1.80 16 22 C -0.18 -1.21 10.18 -26.73 -0.27 -1.48 16 23 C -0.17 -1.33 10.20 -26.73 -0.27 -1.60 16 24 C -0.14 -1.32 5.18 -25.20 -0.13 -1.45 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 0.96 6.30 -51.93 -0.33 0.63 16 27 H 0.07 0.64 6.64 -51.93 -0.34 0.30 16 28 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.07 0.98 6.93 -51.93 -0.36 0.62 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.97 6.47 -51.93 -0.34 0.63 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.09 0.99 7.82 -51.93 -0.41 0.58 16 39 H 0.11 0.87 7.90 -51.93 -0.41 0.46 16 40 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.62 8.07 -51.93 -0.42 0.20 16 42 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 0.83 7.32 -51.93 -0.38 0.45 16 45 H 0.08 0.64 7.54 -51.93 -0.39 0.25 16 LS Contribution 353.97 15.07 5.33 5.33 Total: -1.00 -30.57 353.97 -10.30 -40.87 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -8.40 Total: -3.52 kcal Atomic # 6 Polarization: -18.97 SS G_CDS: -1.49 Total: -20.46 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: -0.34 Total: -34.31 kcal Atomic # 8 Polarization: -4.43 SS G_CDS: -0.39 Total: -4.82 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.57 -10.30 -40.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691655058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.742 kcal (2) G-P(sol) polarization free energy of solvation -30.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds