Wall clock time and date at job start Mon Mar 30 2020 07:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00043 * 2 1 4 4 C 1.53006 * 109.47111 * 293.95296 * 3 2 1 5 5 C 1.52996 * 109.47325 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.46972 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.46814 * 179.97438 * 6 5 4 8 8 H 1.07999 * 120.00372 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00023 * 179.97438 * 7 6 5 10 10 N 1.31522 * 119.99630 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00401 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47197 * 59.99850 * 11 9 7 13 13 H 1.48502 * 109.47252 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47218 * 300.00465 * 11 9 7 15 15 C 1.46905 * 111.00297 * 123.94777 * 2 1 3 16 16 H 1.08996 * 110.80432 * 292.42229 * 15 2 1 17 17 C 1.54992 * 110.90978 * 168.74860 * 15 2 1 18 18 O 1.44567 * 103.58723 * 204.86241 * 17 15 2 19 19 C 1.43741 * 106.87128 * 39.87924 * 18 17 15 20 20 H 1.09005 * 109.87640 * 93.17337 * 19 18 17 21 21 C 1.53003 * 109.88165 * 214.17152 * 19 18 17 22 22 C 1.53001 * 117.51964 * 229.57840 * 21 19 18 23 23 C 1.52999 * 60.00190 * 107.47982 * 22 21 19 24 24 C 1.54096 * 107.42113 * 333.67158 * 19 18 17 25 25 H 1.09002 * 109.46978 * 296.04962 * 1 2 3 26 26 H 1.08996 * 109.47020 * 56.04632 * 1 2 3 27 27 H 1.08999 * 109.47158 * 176.04961 * 1 2 3 28 28 H 1.09000 * 109.47825 * 53.95062 * 3 2 1 29 29 H 1.08995 * 109.47487 * 173.95619 * 3 2 1 30 30 H 1.09000 * 109.47219 * 300.00113 * 4 3 2 31 31 H 1.09000 * 109.47110 * 59.99849 * 4 3 2 32 32 H 1.08999 * 109.47068 * 299.99590 * 5 4 3 33 33 H 1.08995 * 109.47530 * 60.00165 * 5 4 3 34 34 H 1.08999 * 109.46798 * 299.99643 * 6 5 4 35 35 H 1.09000 * 109.47378 * 59.99718 * 6 5 4 36 36 H 0.96996 * 119.99727 * 180.02562 * 10 9 7 37 37 H 1.09001 * 110.61840 * 323.28951 * 17 15 2 38 38 H 1.09000 * 110.61403 * 86.12312 * 17 15 2 39 39 H 1.09002 * 115.54973 * 83.87623 * 21 19 18 40 40 H 1.09001 * 117.49733 * 214.97413 * 22 21 19 41 41 H 1.08995 * 117.49577 * 359.97438 * 22 21 19 42 42 H 1.09004 * 117.50150 * 252.51496 * 23 22 21 43 43 H 1.09004 * 117.51638 * 107.47550 * 23 22 21 44 44 H 1.09003 * 110.48506 * 120.62791 * 24 19 18 45 45 H 1.08999 * 110.49050 * 243.14441 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 6 2.1803 3.4856 -1.3186 6 6 1.8157 4.1717 -2.6367 7 6 2.3558 5.5786 -2.6367 8 1 2.9045 5.9465 -1.7823 9 6 2.1503 6.3960 -3.7280 10 7 1.4824 5.9478 -4.7687 11 14 2.8202 8.1396 -3.7284 12 1 4.2975 8.1023 -3.5813 13 1 2.4674 8.8052 -5.0082 14 1 2.2291 8.8973 -2.5963 15 6 1.9955 -0.7659 1.1377 16 1 1.7715 -0.2642 2.0790 17 6 3.5195 -1.0044 0.9861 18 8 3.7560 -2.1970 1.7682 19 6 2.6495 -3.0816 1.5250 20 1 2.8926 -3.7639 0.7103 21 6 2.3314 -3.8776 2.7924 22 6 2.1870 -5.3947 2.6568 23 6 3.4217 -4.8017 3.3386 24 6 1.4394 -2.2107 1.1357 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0708 28 1 1.5611 1.9275 0.8308 29 1 3.0797 1.3445 0.1082 30 1 2.0658 1.5015 -2.1492 31 1 0.5472 2.0845 -1.4266 32 1 1.7463 4.0418 -0.4878 33 1 3.2645 3.4582 -1.2106 34 1 2.2494 3.6157 -3.4678 35 1 0.7314 4.1991 -2.7443 36 1 1.3382 6.5227 -5.5365 37 1 3.7792 -1.1751 -0.0586 38 1 4.0817 -0.1611 1.3873 39 1 1.6900 -3.3736 3.5154 40 1 1.4506 -5.8888 3.2906 41 1 2.3183 -5.8260 1.6644 42 1 4.3655 -4.8428 2.7948 43 1 3.4978 -4.9053 4.4210 44 1 1.0796 -2.4796 0.1425 45 1 0.6416 -2.3155 1.8709 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691655058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:29:21 Heat of formation + Delta-G solvation = -53.701566 kcal Electronic energy + Delta-G solvation = -20196.918776 eV Core-core repulsion = 17213.719516 eV Total energy + Delta-G solvation = -2983.199260 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98275 -38.62522 -37.31932 -36.10897 -34.25769 -32.11945 -30.17017 -29.93754 -27.31048 -25.52757 -24.29492 -23.25577 -22.80580 -21.63005 -21.58748 -21.07643 -18.42685 -17.74787 -17.42421 -16.66063 -16.51513 -16.14510 -15.89876 -15.59658 -15.32344 -14.81471 -14.62963 -14.29875 -14.11176 -13.65988 -13.42465 -13.21651 -13.06978 -12.78783 -12.56814 -12.39126 -12.31734 -12.29717 -12.26487 -12.13349 -11.86878 -11.80162 -11.32585 -11.27298 -11.19784 -11.04716 -10.89036 -10.67792 -10.54553 -9.35750 -8.19532 -6.30936 1.39519 1.42894 1.50845 2.40793 2.49037 2.88499 3.13013 3.29277 3.45337 3.56264 3.88579 4.01899 4.03029 4.11422 4.14165 4.19520 4.30227 4.40691 4.48478 4.51582 4.55686 4.57203 4.68882 4.76034 4.79938 4.83746 4.84649 4.90539 4.94896 5.01340 5.06115 5.10759 5.22661 5.25761 5.27881 5.28639 5.37158 5.55592 5.78022 5.83764 5.87679 6.03115 6.14782 6.26522 6.86486 7.38182 8.92113 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.052922 B = 0.002607 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 528.956587 B =10735.976147 C =11023.131408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.538 5.538 3 C 0.063 3.937 4 C -0.102 4.102 5 C -0.097 4.097 6 C 0.024 3.976 7 C -0.545 4.545 8 H 0.060 0.940 9 C -0.004 4.004 10 N -0.934 5.934 11 Si 0.966 3.034 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.266 1.266 15 C 0.052 3.948 16 H 0.055 0.945 17 C 0.054 3.946 18 O -0.387 6.387 19 C 0.106 3.894 20 H 0.069 0.931 21 C -0.168 4.168 22 C -0.161 4.161 23 C -0.177 4.177 24 C -0.133 4.133 25 H 0.028 0.972 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.051 0.949 34 H -0.011 1.011 35 H -0.011 1.011 36 H 0.263 0.737 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 -21.436 16.109 26.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.264 5.264 3 C -0.065 4.065 4 C -0.140 4.140 5 C -0.135 4.135 6 C -0.013 4.013 7 C -0.583 4.583 8 H 0.078 0.922 9 C -0.201 4.201 10 N -0.574 5.574 11 Si 0.790 3.210 12 H -0.191 1.191 13 H -0.208 1.208 14 H -0.191 1.191 15 C -0.057 4.057 16 H 0.073 0.927 17 C -0.023 4.023 18 O -0.306 6.306 19 C 0.048 3.952 20 H 0.087 0.913 21 C -0.186 4.186 22 C -0.198 4.198 23 C -0.214 4.214 24 C -0.171 4.171 25 H 0.047 0.953 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.054 0.946 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.007 0.993 35 H 0.007 0.993 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.118 0.882 42 H 0.106 0.894 43 H 0.120 0.880 44 H 0.107 0.893 45 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.040 -21.683 15.661 26.747 hybrid contribution -0.226 1.574 0.086 1.592 sum -0.265 -20.109 15.748 25.543 Atomic orbital electron populations 1.22492 0.86477 1.03029 1.00812 1.62056 1.08874 1.13711 1.41718 1.22092 1.00287 0.87485 0.96598 1.21486 1.00429 0.94808 0.97290 1.21401 0.99769 0.94651 0.97678 1.19008 0.94691 0.94346 0.93286 1.21718 1.35052 0.99314 1.02208 0.92205 1.26029 0.95529 1.03387 0.95161 1.70100 1.42160 1.38376 1.06814 0.85491 0.79102 0.78856 0.77540 1.19138 1.20809 1.19116 1.23166 0.95401 0.94822 0.92300 0.92663 1.23587 0.94574 0.87814 0.96315 1.88928 1.44265 1.28924 1.68451 1.22307 0.85720 0.91585 0.95555 0.91294 1.22452 1.04247 0.92662 0.99222 1.23075 1.00533 0.93265 1.02928 1.22891 0.93814 1.03638 1.01014 1.22992 0.98102 0.92309 1.03667 0.95292 0.91585 0.89724 0.94608 0.90406 0.92601 0.92706 0.93235 0.93004 0.99260 0.99266 0.92782 0.91516 0.88730 0.87163 0.87052 0.88219 0.89385 0.87994 0.89275 0.89136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.06 127.69 1.16 1.57 16 2 N -0.54 -12.74 4.61 -889.41 -4.10 -16.84 16 3 C 0.06 1.70 4.86 86.31 0.42 2.12 16 4 C -0.10 -3.46 5.15 30.59 0.16 -3.31 16 5 C -0.10 -4.00 5.15 30.59 0.16 -3.85 16 6 C 0.02 1.29 4.97 29.85 0.15 1.43 16 7 C -0.54 -31.69 9.11 25.60 0.23 -31.46 16 8 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 9 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 10 N -0.93 -57.93 13.29 21.45 0.28 -57.65 16 11 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 C 0.05 1.07 2.81 46.21 0.13 1.19 16 16 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 17 C 0.05 1.18 6.39 72.66 0.46 1.64 16 18 O -0.39 -8.93 11.15 -148.98 -1.66 -10.59 16 19 C 0.11 1.92 3.60 30.97 0.11 2.03 16 20 H 0.07 1.23 7.93 -2.38 -0.02 1.21 16 21 C -0.17 -2.55 5.28 -10.79 -0.06 -2.61 16 22 C -0.16 -1.89 10.18 30.59 0.31 -1.58 16 23 C -0.18 -2.56 10.20 30.60 0.31 -2.24 16 24 C -0.13 -2.23 5.18 31.58 0.16 -2.07 16 25 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.07 1.56 6.30 -2.39 -0.02 1.55 16 27 H 0.08 1.47 6.64 -2.39 -0.02 1.45 16 28 H 0.04 0.95 8.12 -2.39 -0.02 0.93 16 29 H 0.08 2.01 6.93 -2.39 -0.02 2.00 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.05 1.87 6.47 -2.39 -0.02 1.86 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 34 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 35 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.09 1.96 7.82 -2.39 -0.02 1.94 16 39 H 0.11 1.58 7.90 -2.39 -0.02 1.57 16 40 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.10 1.09 8.07 -2.39 -0.02 1.07 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.09 1.50 7.32 -2.39 -0.02 1.48 16 45 H 0.09 1.28 7.54 -2.39 -0.02 1.26 16 Total: -1.00 -65.41 353.97 1.64 -63.77 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.92 Total: 11.31 kcal Atomic # 6 Polarization: -41.03 SS G_CDS: 4.17 Total: -36.86 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -3.82 Total: -74.48 kcal Atomic # 8 Polarization: -8.93 SS G_CDS: -1.66 Total: -10.59 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.41 1.64 -63.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691655058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.068 kcal (2) G-P(sol) polarization free energy of solvation -65.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds