Wall clock time and date at job start Mon Mar 30 2020 08:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00805 * 2 1 4 4 C 1.52993 * 109.47844 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47260 * 66.13706 * 4 3 2 6 6 C 1.36943 * 119.99806 * 262.77812 * 5 4 3 7 7 H 1.08006 * 119.99614 * 174.89118 * 6 5 4 8 8 C 1.38810 * 120.00244 * 354.89022 * 6 5 4 9 9 N 1.31612 * 119.99964 * 35.10921 * 8 6 5 10 10 Si 1.86802 * 119.99892 * 215.11010 * 8 6 5 11 11 H 1.48498 * 109.47040 * 60.00345 * 10 8 6 12 12 H 1.48502 * 109.46955 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47000 * 299.99713 * 10 8 6 14 14 C 1.46498 * 120.00025 * 82.77482 * 5 4 3 15 15 C 1.52998 * 109.46922 * 81.86286 * 14 5 4 16 16 H 1.09003 * 109.47393 * 303.59708 * 15 14 5 17 17 C 1.52999 * 109.47188 * 63.59237 * 15 14 5 18 18 C 1.53005 * 109.47196 * 120.00008 * 17 15 14 19 19 C 1.52998 * 109.47036 * 60.00096 * 18 17 15 20 20 C 1.52999 * 109.47050 * 299.99994 * 19 18 17 21 21 C 1.52998 * 109.47188 * 0.02562 * 20 19 18 22 22 C 1.52991 * 109.47199 * 299.99796 * 21 20 19 23 23 C 1.53003 * 109.46951 * 299.99991 * 18 17 15 24 24 H 1.09009 * 109.46967 * 59.99900 * 1 2 3 25 25 H 1.08997 * 109.47707 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47348 * 300.00493 * 1 2 3 27 27 H 1.09007 * 109.46957 * 59.99478 * 3 2 1 28 28 H 1.09005 * 109.46990 * 300.00235 * 3 2 1 29 29 H 1.09001 * 109.46939 * 306.13834 * 4 3 2 30 30 H 1.08993 * 109.47558 * 186.14091 * 4 3 2 31 31 H 0.97000 * 120.00274 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.46987 * 321.86515 * 14 5 4 33 33 H 1.08996 * 109.47027 * 201.86332 * 14 5 4 34 34 H 1.09000 * 109.47668 * 359.97438 * 17 15 14 35 35 H 1.09000 * 109.47312 * 239.99962 * 17 15 14 36 36 H 1.08999 * 109.47151 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47186 * 60.00221 * 19 18 17 38 38 H 1.08998 * 109.47495 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.47268 * 120.00389 * 20 19 18 40 40 H 1.09004 * 109.47315 * 239.99923 * 20 19 18 41 41 H 1.09003 * 109.47419 * 179.97438 * 21 20 19 42 42 H 1.09005 * 109.47352 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47411 * 300.00237 * 22 21 20 44 44 H 1.08998 * 109.46922 * 179.97438 * 23 18 17 45 45 H 1.08993 * 109.47023 * 299.99774 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9787 0.5887 -1.2622 6 6 4.2424 -0.7533 -1.3307 7 1 4.4890 -1.2074 -2.2792 8 6 4.1927 -1.5301 -0.1814 9 7 3.3072 -1.2637 0.7551 10 14 5.3829 -2.9534 0.0362 11 1 6.7767 -2.4417 0.0089 12 1 5.1250 -3.6196 1.3381 13 1 5.1925 -3.9305 -1.0656 14 6 4.1398 1.4286 -2.4517 15 6 5.4968 2.1332 -2.3985 16 1 5.5736 2.7046 -1.4734 17 6 6.6152 1.0903 -2.4478 18 6 7.4919 1.3403 -3.6766 19 6 8.1034 2.7401 -3.5905 20 6 6.9850 3.7830 -3.5412 21 6 5.6279 3.0784 -3.5937 22 6 5.5200 2.2759 -4.8918 23 6 6.6387 1.2334 -4.9421 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8494 0.5518 0.8308 30 1 3.9784 2.1743 0.1106 31 1 3.2727 -1.8062 1.5585 32 1 3.3445 2.1735 -2.4809 33 1 4.0881 0.8066 -3.3453 34 1 6.1797 0.0929 -2.5086 35 1 7.2231 1.1664 -1.5462 36 1 8.2884 0.5971 -3.7119 37 1 8.7113 2.8163 -2.6889 38 1 8.7276 2.9185 -4.4660 39 1 7.0616 4.3546 -2.6162 40 1 7.0784 4.4565 -4.3931 41 1 4.8311 3.8214 -3.5582 42 1 4.5529 1.7742 -4.9295 43 1 5.6131 2.9490 -5.7440 44 1 7.2632 1.4119 -5.8174 45 1 6.2032 0.2361 -5.0034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691750403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:16 Heat of formation + Delta-G solvation = -24.045514 kcal Electronic energy + Delta-G solvation = -22461.834542 eV Core-core repulsion = 19479.921265 eV Total energy + Delta-G solvation = -2981.913277 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.11242 -36.75419 -35.10958 -32.04241 -30.90088 -30.56520 -30.09226 -28.16967 -25.33416 -25.14718 -22.78243 -22.23273 -21.67832 -21.05516 -19.40293 -16.81658 -16.05418 -15.88192 -15.59611 -15.20896 -14.68987 -14.50715 -14.24213 -13.54726 -13.32150 -13.13179 -12.55591 -12.13741 -11.83844 -11.78822 -11.69734 -11.54851 -11.52512 -11.43282 -11.25980 -11.02218 -10.76021 -10.60642 -10.37651 -10.27866 -10.09449 -9.90390 -9.80256 -9.38280 -9.33467 -9.22697 -9.12785 -8.25219 -7.96071 -6.74539 -5.53324 -2.73574 3.53026 3.60931 3.64888 4.68377 4.92516 4.98174 5.03117 5.16994 5.47877 5.56572 5.57415 5.67594 5.72115 5.74420 5.76451 5.83816 5.92862 5.98772 6.05834 6.08219 6.13231 6.16708 6.21380 6.34603 6.39710 6.45576 6.49408 6.52989 6.55224 6.60640 6.65048 6.70219 6.77366 6.84827 6.90413 7.01517 7.07224 7.20687 7.33001 7.84167 8.00446 8.50142 8.74770 9.38652 10.09646 10.54646 11.44728 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.007182 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.879288 B = 3897.780794 C = 4845.527650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.290 6.290 3 C 0.059 3.941 4 C 0.146 3.854 5 N -0.589 5.589 6 C -0.254 4.254 7 H 0.072 0.928 8 C 0.014 3.986 9 N -0.839 5.839 10 Si 0.857 3.143 11 H -0.289 1.289 12 H -0.295 1.295 13 H -0.288 1.288 14 C 0.160 3.840 15 C -0.097 4.097 16 H 0.056 0.944 17 C -0.100 4.100 18 C -0.089 4.089 19 C -0.110 4.110 20 C -0.110 4.110 21 C -0.081 4.081 22 C -0.111 4.111 23 C -0.109 4.109 24 H 0.013 0.987 25 H 0.068 0.932 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.118 0.882 30 H 0.018 0.982 31 H 0.246 0.754 32 H 0.022 0.978 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.266 8.745 -6.776 11.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.206 6.206 3 C -0.021 4.021 4 C 0.020 3.980 5 N -0.309 5.309 6 C -0.382 4.382 7 H 0.089 0.911 8 C -0.185 4.185 9 N -0.482 5.482 10 Si 0.686 3.314 11 H -0.216 1.216 12 H -0.222 1.222 13 H -0.215 1.215 14 C 0.033 3.967 15 C -0.118 4.118 16 H 0.075 0.925 17 C -0.137 4.137 18 C -0.108 4.108 19 C -0.148 4.148 20 C -0.147 4.147 21 C -0.100 4.100 22 C -0.149 4.149 23 C -0.146 4.146 24 H 0.032 0.968 25 H 0.086 0.914 26 H 0.034 0.966 27 H 0.029 0.971 28 H 0.026 0.974 29 H 0.135 0.865 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.040 0.960 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.310 8.466 -6.611 11.240 hybrid contribution 0.269 -0.458 0.152 0.552 sum 3.580 8.008 -6.459 10.893 Atomic orbital electron populations 1.22609 0.87230 1.00608 0.97019 1.88825 1.13152 1.24457 1.94134 1.22939 0.98861 0.85251 0.95022 1.21455 0.88991 0.95309 0.92263 1.43980 1.77038 1.04650 1.05258 1.18873 1.41424 0.84184 0.93731 0.91067 1.24647 0.98600 0.97298 0.97996 1.70365 1.28718 1.39214 1.09869 0.86997 0.84342 0.83262 0.76802 1.21595 1.22184 1.21496 1.20796 0.92490 0.92991 0.90441 1.21722 0.98421 0.95774 0.95870 0.92523 1.21525 0.95737 1.01270 0.95170 1.21099 0.97472 0.95950 0.96231 1.21510 0.97217 0.95361 1.00671 1.21503 0.95248 0.97244 1.00732 1.21023 0.96230 0.96979 0.95732 1.21525 0.99103 0.97513 0.96737 1.21474 0.96974 0.99300 0.96891 0.96806 0.91357 0.96603 0.97080 0.97356 0.86474 0.96434 0.94309 0.95958 0.93212 0.89445 0.93334 0.92192 0.92567 0.93044 0.92565 0.92953 0.92113 0.91684 0.93163 0.93140 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 11.01 101.05 1.11 1.58 16 2 O -0.29 -7.17 7.79 -35.23 -0.27 -7.44 16 3 C 0.06 1.33 6.25 37.15 0.23 1.56 16 4 C 0.15 3.43 5.57 -4.05 -0.02 3.41 16 5 N -0.59 -14.03 2.32 -173.25 -0.40 -14.43 16 6 C -0.25 -6.73 7.96 -15.06 -0.12 -6.85 16 7 H 0.07 1.90 7.59 -52.48 -0.40 1.51 16 8 C 0.01 0.37 4.89 -17.43 -0.09 0.29 16 9 N -0.84 -23.36 7.84 55.49 0.44 -22.93 16 10 Si 0.86 21.36 29.67 -169.99 -5.04 16.31 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 12 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 13 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 14 C 0.16 3.21 4.54 -4.04 -0.02 3.19 16 15 C -0.10 -1.68 2.41 -90.65 -0.22 -1.90 16 16 H 0.06 1.05 7.80 -51.93 -0.41 0.64 16 17 C -0.10 -1.79 5.10 -26.73 -0.14 -1.93 16 18 C -0.09 -1.32 3.19 -90.62 -0.29 -1.61 16 19 C -0.11 -1.45 5.71 -26.73 -0.15 -1.60 16 20 C -0.11 -1.42 5.71 -26.73 -0.15 -1.57 16 21 C -0.08 -1.16 2.72 -90.65 -0.25 -1.41 16 22 C -0.11 -1.53 5.35 -26.73 -0.14 -1.67 16 23 C -0.11 -1.52 5.71 -26.73 -0.15 -1.67 16 24 H 0.01 0.25 8.14 -51.92 -0.42 -0.17 16 25 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.01 0.23 8.14 -51.92 -0.42 -0.19 16 28 H 0.01 0.18 7.84 -51.93 -0.41 -0.23 16 29 H 0.12 3.11 5.17 -51.93 -0.27 2.84 16 30 H 0.02 0.38 7.78 -51.93 -0.40 -0.03 16 31 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 32 H 0.02 0.44 7.82 -51.93 -0.41 0.03 16 33 H 0.05 1.01 6.40 -51.93 -0.33 0.68 16 34 H 0.09 1.82 5.60 -51.93 -0.29 1.53 16 35 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.94 6.51 -51.93 -0.34 0.60 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 329.90 15.07 4.97 4.97 Total: -1.00 -27.81 329.90 -9.01 -36.82 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -8.30 Total: -3.12 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -0.39 Total: -10.19 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.03 Total: -37.36 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.27 Total: -7.44 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.04 Total: 16.31 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.81 -9.01 -36.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691750403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.773 kcal (2) G-P(sol) polarization free energy of solvation -27.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds