Wall clock time and date at job start Mon Mar 30 2020 08:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00805 * 2 1 4 4 C 1.52993 * 109.47844 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47260 * 66.13706 * 4 3 2 6 6 C 1.36943 * 119.99806 * 262.77812 * 5 4 3 7 7 H 1.08006 * 119.99614 * 174.89118 * 6 5 4 8 8 C 1.38810 * 120.00244 * 354.89022 * 6 5 4 9 9 N 1.31612 * 119.99964 * 35.10921 * 8 6 5 10 10 Si 1.86802 * 119.99892 * 215.11010 * 8 6 5 11 11 H 1.48498 * 109.47040 * 60.00345 * 10 8 6 12 12 H 1.48502 * 109.46955 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47000 * 299.99713 * 10 8 6 14 14 C 1.46498 * 120.00025 * 82.77482 * 5 4 3 15 15 C 1.52998 * 109.46922 * 81.86286 * 14 5 4 16 16 H 1.09003 * 109.47393 * 303.59708 * 15 14 5 17 17 C 1.52999 * 109.47188 * 63.59237 * 15 14 5 18 18 C 1.53005 * 109.47196 * 120.00008 * 17 15 14 19 19 C 1.52998 * 109.47036 * 60.00096 * 18 17 15 20 20 C 1.52999 * 109.47050 * 299.99994 * 19 18 17 21 21 C 1.52998 * 109.47188 * 0.02562 * 20 19 18 22 22 C 1.52991 * 109.47199 * 299.99796 * 21 20 19 23 23 C 1.53003 * 109.46951 * 299.99991 * 18 17 15 24 24 H 1.09009 * 109.46967 * 59.99900 * 1 2 3 25 25 H 1.08997 * 109.47707 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47348 * 300.00493 * 1 2 3 27 27 H 1.09007 * 109.46957 * 59.99478 * 3 2 1 28 28 H 1.09005 * 109.46990 * 300.00235 * 3 2 1 29 29 H 1.09001 * 109.46939 * 306.13834 * 4 3 2 30 30 H 1.08993 * 109.47558 * 186.14091 * 4 3 2 31 31 H 0.97000 * 120.00274 * 180.02562 * 9 8 6 32 32 H 1.09001 * 109.46987 * 321.86515 * 14 5 4 33 33 H 1.08996 * 109.47027 * 201.86332 * 14 5 4 34 34 H 1.09000 * 109.47668 * 359.97438 * 17 15 14 35 35 H 1.09000 * 109.47312 * 239.99962 * 17 15 14 36 36 H 1.08999 * 109.47151 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47186 * 60.00221 * 19 18 17 38 38 H 1.08998 * 109.47495 * 180.02562 * 19 18 17 39 39 H 1.09001 * 109.47268 * 120.00389 * 20 19 18 40 40 H 1.09004 * 109.47315 * 239.99923 * 20 19 18 41 41 H 1.09003 * 109.47419 * 179.97438 * 21 20 19 42 42 H 1.09005 * 109.47352 * 180.02562 * 22 21 20 43 43 H 1.08999 * 109.47411 * 300.00237 * 22 21 20 44 44 H 1.08998 * 109.46922 * 179.97438 * 23 18 17 45 45 H 1.08993 * 109.47023 * 299.99774 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9787 0.5887 -1.2622 6 6 4.2424 -0.7533 -1.3307 7 1 4.4890 -1.2074 -2.2792 8 6 4.1927 -1.5301 -0.1814 9 7 3.3072 -1.2637 0.7551 10 14 5.3829 -2.9534 0.0362 11 1 6.7767 -2.4417 0.0089 12 1 5.1250 -3.6196 1.3381 13 1 5.1925 -3.9305 -1.0656 14 6 4.1398 1.4286 -2.4517 15 6 5.4968 2.1332 -2.3985 16 1 5.5736 2.7046 -1.4734 17 6 6.6152 1.0903 -2.4478 18 6 7.4919 1.3403 -3.6766 19 6 8.1034 2.7401 -3.5905 20 6 6.9850 3.7830 -3.5412 21 6 5.6279 3.0784 -3.5937 22 6 5.5200 2.2759 -4.8918 23 6 6.6387 1.2334 -4.9421 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.6887 1.8464 0.8900 28 1 1.6887 1.8463 -0.8900 29 1 3.8494 0.5518 0.8308 30 1 3.9784 2.1743 0.1106 31 1 3.2727 -1.8062 1.5585 32 1 3.3445 2.1735 -2.4809 33 1 4.0881 0.8066 -3.3453 34 1 6.1797 0.0929 -2.5086 35 1 7.2231 1.1664 -1.5462 36 1 8.2884 0.5971 -3.7119 37 1 8.7113 2.8163 -2.6889 38 1 8.7276 2.9185 -4.4660 39 1 7.0616 4.3546 -2.6162 40 1 7.0784 4.4565 -4.3931 41 1 4.8311 3.8214 -3.5582 42 1 4.5529 1.7742 -4.9295 43 1 5.6131 2.9490 -5.7440 44 1 7.2632 1.4119 -5.8174 45 1 6.2032 0.2361 -5.0034 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691750403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:15 Heat of formation + Delta-G solvation = -37.212575 kcal Electronic energy + Delta-G solvation = -22462.405509 eV Core-core repulsion = 19479.921265 eV Total energy + Delta-G solvation = -2982.484243 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.35451 -38.53418 -36.88755 -33.77174 -32.23845 -31.79595 -31.56851 -29.91934 -27.09819 -26.76161 -24.58295 -23.32858 -23.07173 -22.44523 -21.06686 -18.73651 -17.30474 -17.19826 -17.13716 -16.57602 -16.26609 -16.18196 -16.00680 -15.27060 -15.10923 -14.84269 -13.87259 -13.64787 -13.45835 -13.01449 -12.94494 -12.82798 -12.81951 -12.76278 -12.74027 -12.68263 -12.45761 -12.36090 -12.17510 -12.09327 -11.72737 -11.56027 -11.23560 -11.19822 -10.59255 -10.50884 -10.46062 -10.08873 -9.89316 -8.67812 -7.59661 -4.78247 1.49197 1.55511 1.59493 2.66180 3.31608 3.58800 3.69907 3.80901 3.88237 3.96534 4.41565 4.47966 4.52658 4.56615 4.58924 4.59761 4.60773 4.65231 4.65684 4.67711 4.71571 4.81181 4.87220 4.91242 4.91433 5.02598 5.06657 5.10061 5.15471 5.20172 5.26669 5.38356 5.43879 5.54541 5.57208 5.59705 5.72674 5.75235 5.80587 5.90154 5.93307 6.50199 7.02898 7.36379 8.13159 8.54353 9.35663 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.007182 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.879288 B = 3897.780794 C = 4845.527650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.332 6.332 3 C 0.065 3.935 4 C 0.146 3.854 5 N -0.600 5.600 6 C -0.248 4.248 7 H 0.061 0.939 8 C -0.028 4.028 9 N -0.852 5.852 10 Si 0.904 3.096 11 H -0.293 1.293 12 H -0.301 1.301 13 H -0.290 1.290 14 C 0.163 3.837 15 C -0.087 4.087 16 H 0.045 0.955 17 C -0.097 4.097 18 C -0.088 4.088 19 C -0.107 4.107 20 C -0.107 4.107 21 C -0.077 4.077 22 C -0.110 4.110 23 C -0.108 4.108 24 H 0.027 0.973 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.027 0.973 28 H 0.015 0.985 29 H 0.088 0.912 30 H 0.035 0.965 31 H 0.238 0.762 32 H 0.029 0.971 33 H 0.042 0.958 34 H 0.052 0.948 35 H 0.030 0.970 36 H 0.059 0.941 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.779 10.593 -8.306 13.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C -0.015 4.015 4 C 0.020 3.980 5 N -0.321 5.321 6 C -0.377 4.377 7 H 0.078 0.922 8 C -0.225 4.225 9 N -0.496 5.496 10 Si 0.734 3.266 11 H -0.220 1.220 12 H -0.228 1.228 13 H -0.217 1.217 14 C 0.037 3.963 15 C -0.108 4.108 16 H 0.063 0.937 17 C -0.135 4.135 18 C -0.106 4.106 19 C -0.144 4.144 20 C -0.144 4.144 21 C -0.096 4.096 22 C -0.147 4.147 23 C -0.145 4.145 24 H 0.046 0.954 25 H 0.089 0.911 26 H 0.052 0.948 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.106 0.894 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.828 10.329 -8.159 13.708 hybrid contribution 0.078 -1.029 0.605 1.196 sum 3.906 9.300 -7.554 12.602 Atomic orbital electron populations 1.22720 0.84978 1.01357 0.98506 1.88741 1.15828 1.25759 1.94476 1.22852 0.97823 0.84855 0.95976 1.21333 0.90210 0.95334 0.91155 1.44110 1.77350 1.04180 1.06494 1.18914 1.40165 0.85453 0.93148 0.92157 1.25051 0.99775 0.99249 0.98451 1.70526 1.29427 1.39860 1.09825 0.86257 0.82779 0.81461 0.76073 1.22017 1.22808 1.21688 1.20891 0.94167 0.92570 0.88699 1.21538 0.96310 0.95827 0.97123 0.93691 1.21420 0.96207 0.99571 0.96274 1.21075 0.97062 0.97507 0.94988 1.21496 0.97463 0.93835 1.01649 1.21497 0.93746 0.97256 1.01907 1.21002 0.97830 0.96495 0.94307 1.21525 0.98270 0.97659 0.97273 1.21470 0.97242 0.98596 0.97215 0.95418 0.91098 0.94782 0.95475 0.96698 0.89447 0.94668 0.95220 0.95279 0.93990 0.92951 0.95061 0.92220 0.92844 0.90794 0.92529 0.90510 0.91180 0.92987 0.90566 0.90722 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.85 11.01 113.37 1.25 2.10 16 2 O -0.33 -16.32 7.79 -148.98 -1.16 -17.48 16 3 C 0.06 2.85 6.25 71.98 0.45 3.30 16 4 C 0.15 6.89 5.57 86.38 0.48 7.37 16 5 N -0.60 -28.94 2.32 -702.03 -1.63 -30.57 16 6 C -0.25 -13.41 7.96 84.03 0.67 -12.74 16 7 H 0.06 3.33 7.59 -2.91 -0.02 3.31 16 8 C -0.03 -1.54 4.89 84.86 0.42 -1.13 16 9 N -0.85 -48.48 7.84 21.65 0.17 -48.31 16 10 Si 0.90 45.22 29.67 68.60 2.04 47.26 16 11 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 12 H -0.30 -15.26 7.11 99.48 0.71 -14.55 16 13 H -0.29 -14.45 7.11 99.48 0.71 -13.75 16 14 C 0.16 6.49 4.54 86.38 0.39 6.88 16 15 C -0.09 -2.97 2.41 -10.81 -0.03 -3.00 16 16 H 0.04 1.63 7.80 -2.39 -0.02 1.62 16 17 C -0.10 -3.51 5.10 30.60 0.16 -3.36 16 18 C -0.09 -2.48 3.19 -10.79 -0.03 -2.52 16 19 C -0.11 -2.49 5.71 30.59 0.17 -2.31 16 20 C -0.11 -2.38 5.71 30.59 0.17 -2.21 16 21 C -0.08 -2.03 2.72 -10.81 -0.03 -2.06 16 22 C -0.11 -2.73 5.35 30.59 0.16 -2.56 16 23 C -0.11 -2.78 5.71 30.60 0.17 -2.61 16 24 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 25 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.01 0.63 7.84 -2.38 -0.02 0.61 16 29 H 0.09 4.74 5.17 -2.39 -0.01 4.73 16 30 H 0.04 1.51 7.78 -2.39 -0.02 1.49 16 31 H 0.24 13.49 8.31 -92.71 -0.77 12.72 16 32 H 0.03 1.11 7.82 -2.39 -0.02 1.10 16 33 H 0.04 1.72 6.40 -2.39 -0.02 1.71 16 34 H 0.05 2.25 5.60 -2.39 -0.01 2.24 16 35 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 37 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.42 6.51 -2.38 -0.02 1.41 16 43 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -60.03 329.90 4.75 -55.27 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: 0.92 Total: 8.67 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.41 Total: -14.84 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.46 Total: -78.88 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -1.16 Total: -17.48 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.04 Total: 47.26 kcal Total: -60.03 4.75 -55.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691750403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.060 kcal (2) G-P(sol) polarization free energy of solvation -60.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds