Wall clock time and date at job start Mon Mar 30 2020 08:25:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00222 * 2 1 4 4 C 1.52998 * 109.47550 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47035 * 65.39372 * 4 3 2 6 6 C 1.36931 * 120.00263 * 270.48824 * 5 4 3 7 7 H 1.08001 * 120.00033 * 139.94098 * 6 5 4 8 8 C 1.38815 * 119.99851 * 319.94263 * 6 5 4 9 9 N 1.31622 * 119.99667 * 157.71641 * 8 6 5 10 10 Si 1.86793 * 120.00171 * 337.71768 * 8 6 5 11 11 H 1.48503 * 109.46965 * 95.51315 * 10 8 6 12 12 H 1.48499 * 109.47291 * 215.51661 * 10 8 6 13 13 H 1.48505 * 109.47289 * 335.51889 * 10 8 6 14 14 C 1.46502 * 119.99687 * 90.48521 * 5 4 3 15 15 C 1.52999 * 109.47164 * 269.99884 * 14 5 4 16 16 H 1.09006 * 109.47083 * 55.00553 * 15 14 5 17 17 C 1.52999 * 109.47351 * 295.00301 * 15 14 5 18 18 C 1.53004 * 109.46622 * 239.99783 * 17 15 14 19 19 C 1.52999 * 109.47428 * 299.99825 * 18 17 15 20 20 C 1.52999 * 109.47076 * 60.00453 * 19 18 17 21 21 C 1.52998 * 109.46972 * 175.00102 * 15 14 5 22 22 C 1.52992 * 109.47453 * 60.00304 * 21 15 14 23 23 C 1.52997 * 109.47294 * 60.00539 * 18 17 15 24 24 H 1.09005 * 109.47029 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46852 * 299.99551 * 1 2 3 26 26 H 1.08996 * 109.47275 * 59.99608 * 1 2 3 27 27 H 1.09001 * 109.46763 * 59.99998 * 3 2 1 28 28 H 1.09002 * 109.47081 * 300.00618 * 3 2 1 29 29 H 1.08997 * 109.46888 * 305.39751 * 4 3 2 30 30 H 1.08993 * 109.47212 * 185.39457 * 4 3 2 31 31 H 0.97001 * 119.99920 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.46896 * 150.00038 * 14 5 4 33 33 H 1.09003 * 109.47269 * 30.00544 * 14 5 4 34 34 H 1.08990 * 109.46753 * 359.97438 * 17 15 14 35 35 H 1.08998 * 109.46656 * 120.00388 * 17 15 14 36 36 H 1.09002 * 109.46709 * 179.97438 * 18 17 15 37 37 H 1.08996 * 109.46981 * 180.02562 * 19 18 17 38 38 H 1.08999 * 109.46978 * 300.00304 * 19 18 17 39 39 H 1.08995 * 109.47130 * 240.00147 * 20 19 18 40 40 H 1.08992 * 109.47269 * 119.99764 * 20 19 18 41 41 H 1.09002 * 109.47159 * 300.00000 * 21 15 14 42 42 H 1.09006 * 109.47106 * 300.00063 * 22 21 15 43 43 H 1.09002 * 109.48054 * 180.02562 * 22 21 15 44 44 H 1.09000 * 109.47200 * 59.98912 * 23 18 17 45 45 H 1.08996 * 109.47457 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9763 0.5730 -1.2567 6 6 4.0879 -0.7883 -1.3533 7 1 3.7750 -1.2932 -2.2553 8 6 4.6032 -1.5195 -0.2918 9 7 4.3227 -2.8004 -0.1773 10 14 5.6946 -0.6856 0.9742 11 1 4.8723 -0.2670 2.1377 12 1 6.7438 -1.6348 1.4253 13 1 6.3354 0.5080 0.3659 14 6 4.2978 1.4179 -2.4096 15 6 3.0389 1.6310 -3.2526 16 1 2.2454 2.0362 -2.6246 17 6 2.5887 0.2936 -3.8439 18 6 2.5936 0.3839 -5.3713 19 6 1.6349 1.4886 -5.8200 20 6 2.0851 2.8259 -5.2288 21 6 3.3440 2.6127 -4.3857 22 6 4.4578 2.0441 -5.2672 23 6 4.0076 0.7067 -5.8585 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8510 0.5624 0.8368 30 1 3.9784 2.1758 0.0960 31 1 4.6830 -3.3114 0.5642 32 1 5.0624 0.9310 -3.0150 33 1 4.6694 2.3817 -2.0614 34 1 3.2719 -0.4932 -3.5245 35 1 1.5813 0.0637 -3.4968 36 1 2.2733 -0.5690 -5.7926 37 1 1.6381 1.5525 -6.9081 38 1 0.6276 1.2585 -5.4729 39 1 1.2917 3.2310 -4.6008 40 1 2.3025 3.5253 -6.0359 41 1 3.6648 3.5655 -3.9644 42 1 5.3547 1.8923 -4.6666 43 1 4.6756 2.7437 -6.0742 44 1 4.6906 -0.0803 -5.5387 45 1 4.0112 0.7706 -6.9466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691750405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:20 Heat of formation + Delta-G solvation = -36.687359 kcal Electronic energy + Delta-G solvation = -22725.446933 eV Core-core repulsion = 19742.985464 eV Total energy + Delta-G solvation = -2982.461468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.15657 -37.27195 -35.42464 -31.96469 -31.07203 -30.74159 -30.45046 -28.49720 -25.63570 -25.55248 -22.76324 -22.26917 -21.83066 -20.97019 -19.95949 -16.92278 -16.19695 -15.94230 -15.84167 -15.41186 -15.16761 -14.74481 -14.46527 -14.10065 -13.45037 -12.97761 -12.74082 -12.21705 -12.13366 -11.91958 -11.78978 -11.67338 -11.63434 -11.53885 -11.52861 -11.36455 -11.08429 -10.70460 -10.61509 -10.50989 -10.15454 -10.02793 -9.70145 -9.52118 -9.34520 -9.26739 -9.11810 -8.73193 -8.28382 -6.57781 -5.79714 -3.21969 3.42633 3.56188 3.60692 4.63650 4.69302 4.86846 4.97218 5.01500 5.14492 5.53886 5.56918 5.63178 5.69936 5.72966 5.73387 5.75737 5.78684 5.83779 5.88150 5.94657 5.97640 6.03543 6.08330 6.12502 6.18279 6.21299 6.25813 6.34185 6.37354 6.46058 6.48179 6.55434 6.60784 6.69447 6.76779 6.85356 6.94054 7.00501 7.18177 7.30094 8.05093 8.26368 8.62234 9.16183 9.90949 10.31243 11.35502 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.007638 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.915332 B = 3665.055509 C = 4182.254849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.345 6.345 3 C 0.046 3.954 4 C 0.135 3.865 5 N -0.596 5.596 6 C -0.249 4.249 7 H 0.083 0.917 8 C 0.043 3.957 9 N -0.898 5.898 10 Si 0.870 3.130 11 H -0.289 1.289 12 H -0.305 1.305 13 H -0.272 1.272 14 C 0.152 3.848 15 C -0.096 4.096 16 H 0.057 0.943 17 C -0.104 4.104 18 C -0.088 4.088 19 C -0.110 4.110 20 C -0.109 4.109 21 C -0.082 4.082 22 C -0.111 4.111 23 C -0.109 4.109 24 H 0.077 0.923 25 H 0.024 0.976 26 H 0.028 0.972 27 H 0.023 0.977 28 H 0.039 0.961 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.259 0.741 32 H 0.058 0.942 33 H 0.029 0.971 34 H 0.094 0.906 35 H 0.048 0.952 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.618 11.016 -7.684 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.262 6.262 3 C -0.034 4.034 4 C 0.008 3.992 5 N -0.317 5.317 6 C -0.378 4.378 7 H 0.100 0.900 8 C -0.157 4.157 9 N -0.540 5.540 10 Si 0.700 3.300 11 H -0.217 1.217 12 H -0.233 1.233 13 H -0.197 1.197 14 C 0.026 3.974 15 C -0.116 4.116 16 H 0.075 0.925 17 C -0.142 4.142 18 C -0.107 4.107 19 C -0.148 4.148 20 C -0.147 4.147 21 C -0.101 4.101 22 C -0.149 4.149 23 C -0.147 4.147 24 H 0.096 0.904 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.041 0.959 28 H 0.057 0.943 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.112 0.888 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -4.444 10.671 -7.600 13.834 hybrid contribution 0.112 0.693 0.886 1.130 sum -4.333 11.364 -6.714 13.892 Atomic orbital electron populations 1.22623 0.84046 1.01732 0.98128 1.88302 1.16657 1.26510 1.94752 1.23359 0.97610 0.85033 0.97389 1.21298 0.90200 0.96448 0.91228 1.43989 1.76127 1.03665 1.07953 1.18705 1.35828 0.79878 1.03358 0.89982 1.25441 0.97870 0.94759 0.97648 1.69892 1.44650 1.07962 1.31468 0.87016 0.81654 0.79293 0.81993 1.21710 1.23294 1.19694 1.21074 0.93942 0.93261 0.89095 1.21780 0.99917 0.94839 0.95105 0.92471 1.21690 1.01959 0.98696 0.91810 1.21092 0.94655 0.97261 0.97677 1.21511 0.98755 0.95353 0.99148 1.21493 0.97621 0.96868 0.98683 1.21054 0.94798 0.98337 0.95886 1.21525 0.98374 0.96520 0.98457 1.21476 0.96832 0.97585 0.98796 0.90429 0.95748 0.95368 0.95917 0.94254 0.92196 0.93137 0.93163 0.92393 0.95307 0.88801 0.93358 0.92121 0.93030 0.92670 0.92732 0.92933 0.92160 0.91600 0.93160 0.91817 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 101.05 1.11 1.67 16 2 O -0.34 -7.75 10.17 -35.23 -0.36 -8.10 16 3 C 0.05 0.90 6.28 37.16 0.23 1.13 16 4 C 0.13 2.92 5.00 -4.04 -0.02 2.90 16 5 N -0.60 -13.72 1.93 -173.24 -0.33 -14.05 16 6 C -0.25 -6.76 8.68 -15.06 -0.13 -6.89 16 7 H 0.08 2.39 5.61 -52.49 -0.29 2.10 16 8 C 0.04 1.24 5.29 -17.43 -0.09 1.14 16 9 N -0.90 -27.68 13.97 55.49 0.78 -26.90 16 10 Si 0.87 22.48 25.16 -169.99 -4.28 18.20 16 11 H -0.29 -7.40 6.69 56.52 0.38 -7.02 16 12 H -0.30 -8.04 7.11 56.52 0.40 -7.64 16 13 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.15 2.93 4.57 -4.04 -0.02 2.92 16 15 C -0.10 -1.62 2.43 -90.62 -0.22 -1.84 16 16 H 0.06 1.02 6.00 -51.93 -0.31 0.71 16 17 C -0.10 -1.89 4.99 -26.73 -0.13 -2.02 16 18 C -0.09 -1.33 3.19 -90.62 -0.29 -1.62 16 19 C -0.11 -1.45 5.71 -26.73 -0.15 -1.60 16 20 C -0.11 -1.39 5.71 -26.73 -0.15 -1.55 16 21 C -0.08 -1.15 2.72 -90.62 -0.25 -1.39 16 22 C -0.11 -1.51 5.36 -26.73 -0.14 -1.65 16 23 C -0.11 -1.54 5.71 -26.73 -0.15 -1.69 16 24 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 25 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.04 0.73 6.00 -51.93 -0.31 0.42 16 29 H 0.06 1.47 3.58 -51.93 -0.19 1.28 16 30 H 0.05 0.96 7.89 -51.93 -0.41 0.55 16 31 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 32 H 0.06 1.16 6.61 -51.93 -0.34 0.81 16 33 H 0.03 0.51 7.89 -51.93 -0.41 0.10 16 34 H 0.09 2.03 4.50 -51.93 -0.23 1.79 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 0.93 6.54 -51.93 -0.34 0.59 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 325.69 15.07 4.91 4.91 Total: -1.00 -30.20 325.69 -7.61 -37.81 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.92 Total: -1.37 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: -0.41 Total: -10.49 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.44 Total: -40.95 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: -0.36 Total: -8.10 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.28 Total: 18.20 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.20 -7.61 -37.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691750405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.122 kcal (2) G-P(sol) polarization free energy of solvation -30.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds