Wall clock time and date at job start Mon Mar 30 2020 08:25:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00222 * 2 1 4 4 C 1.52998 * 109.47550 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47035 * 65.39372 * 4 3 2 6 6 C 1.36931 * 120.00263 * 270.48824 * 5 4 3 7 7 H 1.08001 * 120.00033 * 139.94098 * 6 5 4 8 8 C 1.38815 * 119.99851 * 319.94263 * 6 5 4 9 9 N 1.31622 * 119.99667 * 157.71641 * 8 6 5 10 10 Si 1.86793 * 120.00171 * 337.71768 * 8 6 5 11 11 H 1.48503 * 109.46965 * 95.51315 * 10 8 6 12 12 H 1.48499 * 109.47291 * 215.51661 * 10 8 6 13 13 H 1.48505 * 109.47289 * 335.51889 * 10 8 6 14 14 C 1.46502 * 119.99687 * 90.48521 * 5 4 3 15 15 C 1.52999 * 109.47164 * 269.99884 * 14 5 4 16 16 H 1.09006 * 109.47083 * 55.00553 * 15 14 5 17 17 C 1.52999 * 109.47351 * 295.00301 * 15 14 5 18 18 C 1.53004 * 109.46622 * 239.99783 * 17 15 14 19 19 C 1.52999 * 109.47428 * 299.99825 * 18 17 15 20 20 C 1.52999 * 109.47076 * 60.00453 * 19 18 17 21 21 C 1.52998 * 109.46972 * 175.00102 * 15 14 5 22 22 C 1.52992 * 109.47453 * 60.00304 * 21 15 14 23 23 C 1.52997 * 109.47294 * 60.00539 * 18 17 15 24 24 H 1.09005 * 109.47029 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46852 * 299.99551 * 1 2 3 26 26 H 1.08996 * 109.47275 * 59.99608 * 1 2 3 27 27 H 1.09001 * 109.46763 * 59.99998 * 3 2 1 28 28 H 1.09002 * 109.47081 * 300.00618 * 3 2 1 29 29 H 1.08997 * 109.46888 * 305.39751 * 4 3 2 30 30 H 1.08993 * 109.47212 * 185.39457 * 4 3 2 31 31 H 0.97001 * 119.99920 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.46896 * 150.00038 * 14 5 4 33 33 H 1.09003 * 109.47269 * 30.00544 * 14 5 4 34 34 H 1.08990 * 109.46753 * 359.97438 * 17 15 14 35 35 H 1.08998 * 109.46656 * 120.00388 * 17 15 14 36 36 H 1.09002 * 109.46709 * 179.97438 * 18 17 15 37 37 H 1.08996 * 109.46981 * 180.02562 * 19 18 17 38 38 H 1.08999 * 109.46978 * 300.00304 * 19 18 17 39 39 H 1.08995 * 109.47130 * 240.00147 * 20 19 18 40 40 H 1.08992 * 109.47269 * 119.99764 * 20 19 18 41 41 H 1.09002 * 109.47159 * 300.00000 * 21 15 14 42 42 H 1.09006 * 109.47106 * 300.00063 * 22 21 15 43 43 H 1.09002 * 109.48054 * 180.02562 * 22 21 15 44 44 H 1.09000 * 109.47200 * 59.98912 * 23 18 17 45 45 H 1.08996 * 109.47457 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9763 0.5730 -1.2567 6 6 4.0879 -0.7883 -1.3533 7 1 3.7750 -1.2932 -2.2553 8 6 4.6032 -1.5195 -0.2918 9 7 4.3227 -2.8004 -0.1773 10 14 5.6946 -0.6856 0.9742 11 1 4.8723 -0.2670 2.1377 12 1 6.7438 -1.6348 1.4253 13 1 6.3354 0.5080 0.3659 14 6 4.2978 1.4179 -2.4096 15 6 3.0389 1.6310 -3.2526 16 1 2.2454 2.0362 -2.6246 17 6 2.5887 0.2936 -3.8439 18 6 2.5936 0.3839 -5.3713 19 6 1.6349 1.4886 -5.8200 20 6 2.0851 2.8259 -5.2288 21 6 3.3440 2.6127 -4.3857 22 6 4.4578 2.0441 -5.2672 23 6 4.0076 0.7067 -5.8585 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 1.6886 1.8463 0.8900 28 1 1.6885 1.8464 -0.8899 29 1 3.8510 0.5624 0.8368 30 1 3.9784 2.1758 0.0960 31 1 4.6830 -3.3114 0.5642 32 1 5.0624 0.9310 -3.0150 33 1 4.6694 2.3817 -2.0614 34 1 3.2719 -0.4932 -3.5245 35 1 1.5813 0.0637 -3.4968 36 1 2.2733 -0.5690 -5.7926 37 1 1.6381 1.5525 -6.9081 38 1 0.6276 1.2585 -5.4729 39 1 1.2917 3.2310 -4.6008 40 1 2.3025 3.5253 -6.0359 41 1 3.6648 3.5655 -3.9644 42 1 5.3547 1.8923 -4.6666 43 1 4.6756 2.7437 -6.0742 44 1 4.6906 -0.0803 -5.5387 45 1 4.0112 0.7706 -6.9466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691750405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:25:19 Heat of formation + Delta-G solvation = -54.469657 kcal Electronic energy + Delta-G solvation = -22726.218031 eV Core-core repulsion = 19742.985464 eV Total energy + Delta-G solvation = -2983.232567 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40092 -38.88635 -37.14203 -33.86461 -32.60550 -32.00791 -31.59142 -30.15364 -27.35221 -27.05327 -24.48206 -23.36221 -23.26536 -22.36394 -21.51898 -18.84178 -17.75034 -17.25239 -17.18011 -16.90885 -16.55636 -16.29048 -15.93095 -15.70935 -15.19081 -14.76632 -14.29291 -13.84268 -13.59295 -13.40509 -13.16388 -13.01357 -12.84091 -12.82277 -12.79292 -12.73993 -12.47009 -12.41742 -12.27625 -12.18018 -11.67959 -11.60884 -11.36448 -11.15145 -10.65493 -10.55745 -10.53916 -10.41072 -10.21611 -8.49575 -8.00459 -5.38282 1.35232 1.43964 1.54316 2.55175 3.14955 3.17267 3.55414 3.78025 3.86603 3.89328 4.29483 4.40143 4.40293 4.49026 4.53194 4.56601 4.58030 4.58803 4.59570 4.62185 4.65353 4.67345 4.68209 4.73697 4.83192 4.86479 4.89142 5.02539 5.06562 5.16704 5.19791 5.24730 5.37653 5.41367 5.54733 5.56784 5.59053 5.73357 5.76148 5.79233 6.12942 6.44788 6.61015 7.18192 7.82313 8.24634 9.18698 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019214 B = 0.007638 C = 0.006693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.915332 B = 3665.055509 C = 4182.254849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.395 6.395 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.606 5.606 6 C -0.218 4.218 7 H 0.049 0.951 8 C -0.019 4.019 9 N -0.952 5.952 10 Si 0.931 3.069 11 H -0.286 1.286 12 H -0.317 1.317 13 H -0.256 1.256 14 C 0.151 3.849 15 C -0.085 4.085 16 H 0.053 0.947 17 C -0.098 4.098 18 C -0.088 4.088 19 C -0.106 4.106 20 C -0.105 4.105 21 C -0.078 4.078 22 C -0.110 4.110 23 C -0.109 4.109 24 H 0.074 0.926 25 H 0.050 0.950 26 H 0.041 0.959 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.032 0.968 30 H 0.085 0.915 31 H 0.254 0.746 32 H 0.044 0.956 33 H 0.054 0.946 34 H 0.049 0.951 35 H 0.024 0.976 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.077 0.923 44 H 0.040 0.960 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.993 14.804 -8.699 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.314 6.314 3 C -0.030 4.030 4 C 0.000 4.000 5 N -0.329 5.329 6 C -0.348 4.348 7 H 0.066 0.934 8 C -0.214 4.214 9 N -0.598 5.598 10 Si 0.762 3.238 11 H -0.213 1.213 12 H -0.246 1.246 13 H -0.180 1.180 14 C 0.026 3.974 15 C -0.106 4.106 16 H 0.071 0.929 17 C -0.135 4.135 18 C -0.107 4.107 19 C -0.144 4.144 20 C -0.143 4.143 21 C -0.097 4.097 22 C -0.147 4.147 23 C -0.146 4.146 24 H 0.093 0.907 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.827 14.523 -8.627 17.568 hybrid contribution 0.141 -0.489 1.126 1.236 sum -4.686 14.033 -7.501 16.588 Atomic orbital electron populations 1.22753 0.81661 1.02261 0.99952 1.88224 1.19527 1.28482 1.95169 1.23304 0.95997 0.84416 0.99274 1.21439 0.92071 0.97305 0.89229 1.44092 1.76649 1.02496 1.09622 1.18589 1.32779 0.81939 1.01465 0.93408 1.26007 0.99920 0.95227 1.00285 1.70032 1.47140 1.09761 1.32852 0.86004 0.79534 0.78322 0.79953 1.21344 1.24605 1.18022 1.21205 0.94877 0.93353 0.87978 1.21611 0.98321 0.94772 0.95893 0.92883 1.21515 0.99245 0.98283 0.94485 1.21064 0.96287 0.98173 0.95140 1.21486 0.97710 0.94734 1.00458 1.21490 0.96809 0.96794 0.99208 1.21044 0.95787 0.97893 0.94943 1.21534 0.97713 0.96427 0.99067 1.21466 0.95415 0.97532 1.00195 0.90742 0.93170 0.94053 0.93047 0.93038 0.94976 0.89666 0.93745 0.93751 0.92725 0.93215 0.95685 0.92959 0.90954 0.93072 0.92372 0.90442 0.90356 0.92641 0.90461 0.94129 0.90899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 11.01 113.37 1.25 2.27 16 2 O -0.40 -17.72 10.17 -148.98 -1.52 -19.24 16 3 C 0.05 1.83 6.28 71.98 0.45 2.28 16 4 C 0.12 5.22 5.00 86.38 0.43 5.65 16 5 N -0.61 -27.74 1.93 -702.01 -1.36 -29.10 16 6 C -0.22 -12.24 8.68 84.04 0.73 -11.51 16 7 H 0.05 3.01 5.61 -2.91 -0.02 2.99 16 8 C -0.02 -1.16 5.29 84.86 0.45 -0.71 16 9 N -0.95 -61.67 13.97 21.65 0.30 -61.37 16 10 Si 0.93 47.63 25.16 68.60 1.73 49.35 16 11 H -0.29 -14.27 6.69 99.48 0.67 -13.61 16 12 H -0.32 -16.62 7.11 99.48 0.71 -15.91 16 13 H -0.26 -12.22 7.11 99.48 0.71 -11.51 16 14 C 0.15 5.61 4.57 86.38 0.39 6.01 16 15 C -0.09 -2.77 2.43 -10.79 -0.03 -2.79 16 16 H 0.05 1.78 6.00 -2.38 -0.01 1.76 16 17 C -0.10 -3.62 4.99 30.60 0.15 -3.47 16 18 C -0.09 -2.59 3.19 -10.79 -0.03 -2.63 16 19 C -0.11 -2.50 5.71 30.59 0.17 -2.33 16 20 C -0.11 -2.25 5.71 30.60 0.17 -2.08 16 21 C -0.08 -1.91 2.72 -10.79 -0.03 -1.94 16 22 C -0.11 -2.65 5.36 30.59 0.16 -2.49 16 23 C -0.11 -2.91 5.71 30.60 0.17 -2.73 16 24 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 25 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.05 1.79 6.00 -2.39 -0.01 1.77 16 29 H 0.03 1.54 3.58 -2.39 -0.01 1.53 16 30 H 0.09 2.93 7.89 -2.39 -0.02 2.91 16 31 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 32 H 0.04 1.77 6.61 -2.38 -0.02 1.75 16 33 H 0.05 1.77 7.89 -2.39 -0.02 1.75 16 34 H 0.05 2.29 4.50 -2.39 -0.01 2.28 16 35 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.05 1.46 6.54 -2.38 -0.02 1.44 16 43 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -68.76 325.69 4.52 -64.25 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: 0.90 Total: 12.58 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 4.46 Total: -16.47 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -1.05 Total: -90.47 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -1.52 Total: -19.24 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 1.73 Total: 49.35 kcal Total: -68.76 4.52 -64.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691750405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.776 kcal (2) G-P(sol) polarization free energy of solvation -68.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds