Wall clock time and date at job start Mon Mar 30 2020 07:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99821 * 2 1 4 4 H 1.09001 * 109.46738 * 30.01201 * 3 2 1 5 5 C 1.53008 * 109.46651 * 150.00706 * 3 2 1 6 6 N 1.46899 * 109.47077 * 300.00085 * 5 3 2 7 7 C 1.46903 * 111.00252 * 293.95639 * 6 5 3 8 8 C 1.46894 * 111.00031 * 170.00273 * 6 5 3 9 9 C 1.53002 * 109.47376 * 196.03995 * 8 6 5 10 10 C 1.50701 * 115.54925 * 55.25705 * 9 8 6 11 11 H 1.07996 * 119.99853 * 265.07322 * 10 9 8 12 12 C 1.37878 * 119.99914 * 85.07549 * 10 9 8 13 13 N 1.31517 * 120.00131 * 4.40830 * 12 10 9 14 14 Si 1.86803 * 120.00060 * 184.41197 * 12 10 9 15 15 H 1.48497 * 109.46933 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46990 * 119.99826 * 14 12 10 17 17 H 1.48496 * 109.46843 * 239.99628 * 14 12 10 18 18 C 1.52997 * 117.49991 * 269.58831 * 9 8 6 19 19 C 1.53001 * 117.49938 * 200.92883 * 9 8 6 20 20 C 1.52996 * 109.47492 * 270.00482 * 3 2 1 21 21 C 1.53783 * 113.61328 * 157.49569 * 20 3 2 22 22 C 1.53775 * 87.08242 * 220.02217 * 21 20 3 23 23 C 1.53775 * 87.08184 * 25.43294 * 22 21 20 24 24 H 1.09003 * 109.47123 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46610 * 299.98857 * 1 2 3 26 26 H 1.08996 * 109.47684 * 59.98862 * 1 2 3 27 27 H 1.08991 * 109.46973 * 60.00176 * 5 3 2 28 28 H 1.09003 * 109.46437 * 180.02562 * 5 3 2 29 29 H 1.09007 * 109.47010 * 58.94464 * 7 6 5 30 30 H 1.09000 * 109.47257 * 178.94451 * 7 6 5 31 31 H 1.08994 * 109.46967 * 298.94611 * 7 6 5 32 32 H 1.09010 * 109.46966 * 316.03983 * 8 6 5 33 33 H 1.08997 * 109.47129 * 76.03744 * 8 6 5 34 34 H 0.96997 * 120.00166 * 185.00818 * 13 12 10 35 35 H 1.09001 * 117.49477 * 359.97438 * 18 9 8 36 36 H 1.09000 * 117.49945 * 145.01669 * 18 9 8 37 37 H 1.09002 * 117.49522 * 214.98064 * 19 9 8 38 38 H 1.08997 * 117.49968 * 359.97438 * 19 9 8 39 39 H 1.09000 * 112.85368 * 288.80492 * 20 3 2 40 40 H 1.08996 * 113.61551 * 334.57538 * 21 20 3 41 41 H 1.09003 * 113.61053 * 105.47033 * 21 20 3 42 42 H 1.09006 * 113.61640 * 270.88679 * 22 21 20 43 43 H 1.09005 * 113.69325 * 139.99634 * 22 21 20 44 44 H 1.09001 * 113.61843 * 220.02037 * 23 22 21 45 45 H 1.08996 * 113.61406 * 89.11728 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5140 5 6 3.3590 1.2632 0.7212 6 7 3.1599 0.8157 2.1061 7 6 2.3851 1.8014 2.8717 8 6 4.4457 0.5352 2.7587 9 6 4.2061 -0.2909 4.0240 10 6 3.4390 -1.5732 3.8274 11 1 2.3703 -1.5921 3.9818 12 6 4.1017 -2.7220 3.4505 13 7 5.4127 -2.7210 3.3468 14 14 3.1372 -4.2800 3.0872 15 1 1.6874 -4.0198 3.2750 16 1 3.3866 -4.7008 1.6850 17 1 3.5712 -5.3578 4.0120 18 6 3.9871 0.4696 5.3333 19 6 5.3004 -0.2791 5.0932 20 6 2.2175 1.7715 -1.4424 21 6 2.3075 3.2997 -1.5891 22 6 1.4683 3.1475 -2.8687 23 6 0.9160 1.8488 -2.2579 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8902 26 1 -0.3634 0.5140 -0.8898 27 1 4.0241 0.5694 0.2072 28 1 3.8021 2.2591 0.7215 29 1 1.4167 1.9523 2.3944 30 1 2.2363 1.4366 3.8880 31 1 2.9271 2.7465 2.9006 32 1 5.0855 -0.0237 2.0756 33 1 4.9308 1.4744 3.0244 34 1 5.8734 -3.5063 3.0121 35 1 4.0142 1.5586 5.2933 36 1 3.2885 0.0424 6.0527 37 1 5.4652 -1.1987 5.6547 38 1 6.1912 0.3168 4.8951 39 1 3.0194 1.2349 -1.9496 40 1 1.7979 3.8453 -0.7950 41 1 3.3193 3.6620 -1.7710 42 1 2.0657 2.9883 -3.7664 43 1 0.7154 3.9258 -2.9939 44 1 0.8045 1.0397 -2.9798 45 1 0.0260 1.9977 -1.6467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692222603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:45 Heat of formation + Delta-G solvation = 8.697402 kcal Electronic energy + Delta-G solvation = -21791.635405 eV Core-core repulsion = 18811.141968 eV Total energy + Delta-G solvation = -2980.493438 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.63860 -37.50190 -36.51478 -34.84320 -31.68138 -30.07735 -26.92430 -26.19560 -25.74601 -25.50482 -24.94955 -22.25446 -20.96055 -20.29747 -19.51148 -18.83113 -16.48856 -16.05231 -15.74413 -15.25589 -14.81324 -14.43789 -14.13638 -14.05672 -13.70869 -13.52618 -12.96454 -12.59553 -12.48314 -12.15529 -12.03169 -11.76405 -11.47753 -11.38172 -11.13543 -11.00183 -10.85078 -10.76127 -10.55860 -10.49743 -10.31423 -10.21442 -10.08705 -9.97881 -9.26782 -8.89785 -8.76850 -8.17321 -7.89954 -7.28431 -5.80527 -3.80856 3.44920 3.52455 3.58124 4.08765 4.45163 4.60677 4.63255 4.67579 4.81924 4.89464 5.25541 5.46366 5.48110 5.49123 5.55360 5.62039 5.64764 5.70150 5.78577 5.79823 5.81700 5.87485 5.93158 5.98993 6.01642 6.07822 6.16781 6.28647 6.36044 6.40810 6.45572 6.55238 6.61908 6.71549 6.83271 7.04492 7.23892 7.59448 7.65553 7.67629 8.00405 8.11714 8.12602 8.69710 9.16969 9.81552 11.29236 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019658 B = 0.005922 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.008869 B = 4727.092315 C = 5505.519511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.107 3.893 4 H 0.055 0.945 5 C 0.059 3.941 6 N -0.505 5.505 7 C 0.029 3.971 8 C 0.105 3.895 9 C 0.054 3.946 10 C -0.453 4.453 11 H 0.057 0.943 12 C 0.067 3.933 13 N -0.891 5.891 14 Si 0.887 3.113 15 H -0.274 1.274 16 H -0.286 1.286 17 H -0.290 1.290 18 C -0.219 4.219 19 C -0.154 4.154 20 C -0.132 4.132 21 C -0.134 4.134 22 C -0.142 4.142 23 C -0.136 4.136 24 H 0.079 0.921 25 H 0.036 0.964 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.032 0.968 29 H 0.049 0.951 30 H 0.077 0.923 31 H 0.006 0.994 32 H 0.072 0.928 33 H -0.001 1.001 34 H 0.255 0.745 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.095 0.905 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 11.537 -9.299 16.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.271 6.271 3 C 0.049 3.951 4 H 0.073 0.927 5 C -0.069 4.069 6 N -0.227 5.227 7 C -0.119 4.119 8 C -0.022 4.022 9 C 0.053 3.947 10 C -0.491 4.491 11 H 0.075 0.925 12 C -0.133 4.133 13 N -0.530 5.530 14 Si 0.715 3.285 15 H -0.199 1.199 16 H -0.212 1.212 17 H -0.217 1.217 18 C -0.256 4.256 19 C -0.192 4.192 20 C -0.151 4.151 21 C -0.172 4.172 22 C -0.180 4.180 23 C -0.174 4.174 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.096 0.904 28 H 0.050 0.950 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.024 0.976 32 H 0.090 0.910 33 H 0.017 0.983 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.170 10.780 -9.292 15.936 hybrid contribution -0.115 0.109 -0.282 0.324 sum -7.285 10.889 -9.574 16.227 Atomic orbital electron populations 1.22871 0.82649 1.02327 0.99121 1.88085 1.18126 1.26279 1.94575 1.22106 0.95140 0.85308 0.92595 0.92659 1.22179 0.95421 0.98196 0.91138 1.61678 1.19655 1.41678 0.99711 1.22407 0.96942 0.92467 1.00124 1.21683 0.87952 0.95076 0.97472 1.18817 0.97254 0.94329 0.84303 1.20253 0.93073 0.90793 1.44961 0.92482 1.24877 0.94603 0.98153 0.95676 1.70019 1.06711 1.29593 1.46680 0.86626 0.80527 0.83647 0.77680 1.19872 1.21222 1.21717 1.23049 1.01780 0.95724 1.05025 1.22500 0.90359 1.00045 1.06267 1.23112 0.98859 0.96144 0.97005 1.22905 1.00420 0.95960 0.97906 1.22825 0.99573 0.98046 0.97519 1.22969 0.97416 0.97737 0.99250 0.90261 0.94588 0.94403 0.90408 0.95026 0.93256 0.90450 0.97571 0.91007 0.98328 0.93571 0.92326 0.90722 0.89755 0.92438 0.88655 0.90284 0.91450 0.90327 0.91755 0.91425 0.90111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 101.05 1.07 1.45 16 2 O -0.35 -6.30 10.16 -35.23 -0.36 -6.66 16 3 C 0.11 1.62 1.90 -26.73 -0.05 1.57 16 4 H 0.06 0.80 5.98 -51.93 -0.31 0.49 16 5 C 0.06 1.03 4.64 -3.82 -0.02 1.01 16 6 N -0.50 -10.37 4.28 -242.91 -1.04 -11.41 16 7 C 0.03 0.52 9.08 60.07 0.55 1.07 16 8 C 0.11 2.41 4.88 -3.83 -0.02 2.39 16 9 C 0.05 1.34 1.24 -155.66 -0.19 1.15 16 10 C -0.45 -12.64 8.53 -34.44 -0.29 -12.94 16 11 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 12 C 0.07 1.91 5.43 -17.82 -0.10 1.82 16 13 N -0.89 -25.99 12.65 55.43 0.70 -25.28 16 14 Si 0.89 22.36 29.54 -169.99 -5.02 17.34 16 15 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 16 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 17 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 18 C -0.22 -4.87 8.35 -26.70 -0.22 -5.09 16 19 C -0.15 -3.72 9.18 -26.69 -0.24 -3.97 16 20 C -0.13 -1.63 3.36 -89.81 -0.30 -1.93 16 21 C -0.13 -1.38 7.63 -25.92 -0.20 -1.58 16 22 C -0.14 -1.31 8.08 -25.93 -0.21 -1.52 16 23 C -0.14 -1.45 6.18 -25.92 -0.16 -1.61 16 24 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.04 0.49 8.09 -51.93 -0.42 0.07 16 26 H 0.04 0.44 4.95 -51.93 -0.26 0.18 16 27 H 0.08 1.46 7.86 -51.93 -0.41 1.05 16 28 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.05 0.79 6.42 -51.92 -0.33 0.46 16 30 H 0.08 1.49 6.07 -51.93 -0.32 1.18 16 31 H 0.01 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.07 1.80 7.81 -51.92 -0.41 1.39 16 33 H 0.00 -0.03 8.00 -51.93 -0.42 -0.44 16 34 H 0.25 7.16 8.32 -40.82 -0.34 6.82 16 35 H 0.06 1.18 8.03 -51.93 -0.42 0.76 16 36 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 37 H 0.08 2.20 8.14 -51.93 -0.42 1.78 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.08 0.79 7.96 -51.93 -0.41 0.38 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.08 0.83 6.33 -51.93 -0.33 0.50 16 LS Contribution 350.18 15.07 5.28 5.28 Total: -1.00 -29.93 350.18 -9.06 -38.98 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.22 Total: -0.09 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -0.39 Total: -18.17 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.34 Total: -36.69 kcal Atomic # 8 Polarization: -6.30 SS G_CDS: -0.36 Total: -6.66 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.93 -9.06 -38.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692222603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.681 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds