Wall clock time and date at job start Mon Mar 30 2020 07:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42903 * 113.99821 * 2 1 4 4 H 1.09001 * 109.46738 * 30.01201 * 3 2 1 5 5 C 1.53008 * 109.46651 * 150.00706 * 3 2 1 6 6 N 1.46899 * 109.47077 * 300.00085 * 5 3 2 7 7 C 1.46903 * 111.00252 * 293.95639 * 6 5 3 8 8 C 1.46894 * 111.00031 * 170.00273 * 6 5 3 9 9 C 1.53002 * 109.47376 * 196.03995 * 8 6 5 10 10 C 1.50701 * 115.54925 * 55.25705 * 9 8 6 11 11 H 1.07996 * 119.99853 * 265.07322 * 10 9 8 12 12 C 1.37878 * 119.99914 * 85.07549 * 10 9 8 13 13 N 1.31517 * 120.00131 * 4.40830 * 12 10 9 14 14 Si 1.86803 * 120.00060 * 184.41197 * 12 10 9 15 15 H 1.48497 * 109.46933 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.46990 * 119.99826 * 14 12 10 17 17 H 1.48496 * 109.46843 * 239.99628 * 14 12 10 18 18 C 1.52997 * 117.49991 * 269.58831 * 9 8 6 19 19 C 1.53001 * 117.49938 * 200.92883 * 9 8 6 20 20 C 1.52996 * 109.47492 * 270.00482 * 3 2 1 21 21 C 1.53783 * 113.61328 * 157.49569 * 20 3 2 22 22 C 1.53775 * 87.08242 * 220.02217 * 21 20 3 23 23 C 1.53775 * 87.08184 * 25.43294 * 22 21 20 24 24 H 1.09003 * 109.47123 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46610 * 299.98857 * 1 2 3 26 26 H 1.08996 * 109.47684 * 59.98862 * 1 2 3 27 27 H 1.08991 * 109.46973 * 60.00176 * 5 3 2 28 28 H 1.09003 * 109.46437 * 180.02562 * 5 3 2 29 29 H 1.09007 * 109.47010 * 58.94464 * 7 6 5 30 30 H 1.09000 * 109.47257 * 178.94451 * 7 6 5 31 31 H 1.08994 * 109.46967 * 298.94611 * 7 6 5 32 32 H 1.09010 * 109.46966 * 316.03983 * 8 6 5 33 33 H 1.08997 * 109.47129 * 76.03744 * 8 6 5 34 34 H 0.96997 * 120.00166 * 185.00818 * 13 12 10 35 35 H 1.09001 * 117.49477 * 359.97438 * 18 9 8 36 36 H 1.09000 * 117.49945 * 145.01669 * 18 9 8 37 37 H 1.09002 * 117.49522 * 214.98064 * 19 9 8 38 38 H 1.08997 * 117.49968 * 359.97438 * 19 9 8 39 39 H 1.09000 * 112.85368 * 288.80492 * 20 3 2 40 40 H 1.08996 * 113.61551 * 334.57538 * 21 20 3 41 41 H 1.09003 * 113.61053 * 105.47033 * 21 20 3 42 42 H 1.09006 * 113.61640 * 270.88679 * 22 21 20 43 43 H 1.09005 * 113.69325 * 139.99634 * 22 21 20 44 44 H 1.09001 * 113.61843 * 220.02037 * 23 22 21 45 45 H 1.08996 * 113.61406 * 89.11728 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5140 5 6 3.3590 1.2632 0.7212 6 7 3.1599 0.8157 2.1061 7 6 2.3851 1.8014 2.8717 8 6 4.4457 0.5352 2.7587 9 6 4.2061 -0.2909 4.0240 10 6 3.4390 -1.5732 3.8274 11 1 2.3703 -1.5921 3.9818 12 6 4.1017 -2.7220 3.4505 13 7 5.4127 -2.7210 3.3468 14 14 3.1372 -4.2800 3.0872 15 1 1.6874 -4.0198 3.2750 16 1 3.3866 -4.7008 1.6850 17 1 3.5712 -5.3578 4.0120 18 6 3.9871 0.4696 5.3333 19 6 5.3004 -0.2791 5.0932 20 6 2.2175 1.7715 -1.4424 21 6 2.3075 3.2997 -1.5891 22 6 1.4683 3.1475 -2.8687 23 6 0.9160 1.8488 -2.2579 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8902 26 1 -0.3634 0.5140 -0.8898 27 1 4.0241 0.5694 0.2072 28 1 3.8021 2.2591 0.7215 29 1 1.4167 1.9523 2.3944 30 1 2.2363 1.4366 3.8880 31 1 2.9271 2.7465 2.9006 32 1 5.0855 -0.0237 2.0756 33 1 4.9308 1.4744 3.0244 34 1 5.8734 -3.5063 3.0121 35 1 4.0142 1.5586 5.2933 36 1 3.2885 0.0424 6.0527 37 1 5.4652 -1.1987 5.6547 38 1 6.1912 0.3168 4.8951 39 1 3.0194 1.2349 -1.9496 40 1 1.7979 3.8453 -0.7950 41 1 3.3193 3.6620 -1.7710 42 1 2.0657 2.9883 -3.7664 43 1 0.7154 3.9258 -2.9939 44 1 0.8045 1.0397 -2.9798 45 1 0.0260 1.9977 -1.6467 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692222603.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:45 Heat of formation + Delta-G solvation = -8.469587 kcal Electronic energy + Delta-G solvation = -21792.379822 eV Core-core repulsion = 18811.141968 eV Total energy + Delta-G solvation = -2981.237854 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68479 -39.12471 -37.72222 -36.47783 -33.83398 -31.32520 -28.56512 -27.41219 -27.25339 -26.67039 -26.32395 -23.55694 -22.83769 -21.62754 -20.82952 -20.34813 -17.91768 -17.62572 -17.01601 -16.62451 -16.24171 -16.03596 -15.78232 -15.49740 -15.36560 -14.66022 -14.39210 -14.19840 -13.49917 -13.47480 -13.28470 -13.06270 -12.91800 -12.83069 -12.79733 -12.58774 -12.45238 -12.35232 -12.26164 -11.98149 -11.90823 -11.49723 -11.29565 -11.12572 -10.99359 -10.82298 -10.25651 -10.04938 -9.83328 -8.82103 -7.98236 -6.02438 1.41041 1.44631 1.54699 2.51868 2.97198 3.11392 3.32112 3.62839 3.70277 3.82982 3.87305 4.00423 4.13194 4.32609 4.38710 4.45315 4.50365 4.56231 4.60984 4.64256 4.66590 4.69297 4.78024 4.82743 4.85302 4.88157 4.91179 4.96164 5.00777 5.06506 5.09431 5.10972 5.13575 5.24320 5.33332 5.36585 5.59284 5.70411 5.75520 5.91655 6.38971 6.44603 6.60903 6.65100 6.99312 7.61625 9.10838 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019658 B = 0.005922 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.008869 B = 4727.092315 C = 5505.519511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.393 6.393 3 C 0.112 3.888 4 H 0.067 0.933 5 C 0.061 3.939 6 N -0.529 5.529 7 C 0.033 3.967 8 C 0.120 3.880 9 C 0.027 3.973 10 C -0.458 4.458 11 H 0.042 0.958 12 C 0.023 3.977 13 N -0.917 5.917 14 Si 0.939 3.061 15 H -0.272 1.272 16 H -0.288 1.288 17 H -0.285 1.285 18 C -0.187 4.187 19 C -0.161 4.161 20 C -0.139 4.139 21 C -0.130 4.130 22 C -0.132 4.132 23 C -0.135 4.135 24 H 0.076 0.924 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.025 0.975 32 H 0.037 0.963 33 H 0.014 0.986 34 H 0.253 0.747 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.583 13.461 -9.984 18.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.312 6.312 3 C 0.054 3.946 4 H 0.085 0.915 5 C -0.068 4.068 6 N -0.252 5.252 7 C -0.115 4.115 8 C -0.008 4.008 9 C 0.027 3.973 10 C -0.496 4.496 11 H 0.060 0.940 12 C -0.175 4.175 13 N -0.557 5.557 14 Si 0.766 3.234 15 H -0.196 1.196 16 H -0.215 1.215 17 H -0.211 1.211 18 C -0.224 4.224 19 C -0.200 4.200 20 C -0.158 4.158 21 C -0.167 4.167 22 C -0.169 4.169 23 C -0.172 4.172 24 H 0.095 0.905 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.062 0.938 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.600 12.713 -9.975 18.305 hybrid contribution 0.304 -0.481 -0.049 0.571 sum -8.296 12.232 -10.024 17.858 Atomic orbital electron populations 1.23002 0.80999 1.02728 1.00493 1.88024 1.20161 1.28099 1.94919 1.22138 0.93683 0.84619 0.94126 0.91543 1.22214 0.96798 0.98301 0.89445 1.61582 1.18646 1.43790 1.01177 1.22373 0.97632 0.92416 0.99036 1.21351 0.88877 0.94790 0.95776 1.18921 0.97835 0.94466 0.86124 1.20426 0.92536 0.92361 1.44300 0.93982 1.25473 0.95371 1.00651 0.96031 1.70110 1.07695 1.30162 1.47723 0.85805 0.79451 0.80869 0.77250 1.19629 1.21470 1.21124 1.22998 0.99730 0.97023 1.02650 1.22397 0.91615 0.99721 1.06231 1.23099 0.99763 0.97687 0.95281 1.22916 1.01084 0.93976 0.98727 1.22786 0.99559 0.97472 0.97117 1.22979 0.96651 0.98587 0.99002 0.90503 0.94320 0.91805 0.92976 0.93026 0.91467 0.92003 0.95619 0.94454 0.96828 0.93755 0.89413 0.90895 0.92424 0.91251 0.89983 0.89552 0.91070 0.89806 0.90153 0.91675 0.89468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 10.57 113.37 1.20 1.84 16 2 O -0.39 -13.85 10.16 -148.98 -1.51 -15.36 16 3 C 0.11 3.26 1.90 30.60 0.06 3.32 16 4 H 0.07 1.75 5.98 -2.39 -0.01 1.74 16 5 C 0.06 2.08 4.64 86.31 0.40 2.48 16 6 N -0.53 -21.39 4.28 -922.44 -3.95 -25.34 16 7 C 0.03 1.12 9.08 127.69 1.16 2.28 16 8 C 0.12 5.48 4.88 86.31 0.42 5.90 16 9 C 0.03 1.36 1.24 -52.93 -0.07 1.30 16 10 C -0.46 -25.92 8.53 25.60 0.22 -25.70 16 11 H 0.04 2.45 7.82 -2.91 -0.02 2.43 16 12 C 0.02 1.30 5.43 84.65 0.46 1.76 16 13 N -0.92 -54.67 12.65 21.45 0.27 -54.40 16 14 Si 0.94 46.67 29.54 68.60 2.03 48.70 16 15 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 16 H -0.29 -14.35 7.11 99.48 0.71 -13.64 16 17 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 18 C -0.19 -8.06 8.35 30.62 0.26 -7.80 16 19 C -0.16 -7.82 9.18 30.62 0.28 -7.54 16 20 C -0.14 -3.22 3.36 -10.27 -0.03 -3.26 16 21 C -0.13 -2.31 7.63 31.12 0.24 -2.07 16 22 C -0.13 -2.03 8.08 31.12 0.25 -1.78 16 23 C -0.13 -2.54 6.18 31.12 0.19 -2.35 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.04 0.99 8.09 -2.38 -0.02 0.97 16 26 H 0.06 1.34 4.95 -2.39 -0.01 1.33 16 27 H 0.05 2.02 7.86 -2.39 -0.02 2.00 16 28 H 0.05 1.54 8.12 -2.39 -0.02 1.52 16 29 H 0.07 1.99 6.42 -2.38 -0.02 1.98 16 30 H 0.06 2.26 6.07 -2.39 -0.01 2.25 16 31 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.04 1.92 7.81 -2.38 -0.02 1.90 16 33 H 0.01 0.57 8.00 -2.39 -0.02 0.55 16 34 H 0.25 14.58 8.32 -92.71 -0.77 13.80 16 35 H 0.09 3.27 8.03 -2.39 -0.02 3.25 16 36 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 37 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 39 H 0.08 2.10 8.14 -2.39 -0.02 2.09 16 40 H 0.09 1.43 7.96 -2.39 -0.02 1.41 16 41 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.09 1.53 6.33 -2.39 -0.02 1.51 16 Total: -1.00 -64.70 350.18 2.79 -61.91 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: 0.93 Total: 16.11 kcal Atomic # 6 Polarization: -36.65 SS G_CDS: 5.03 Total: -31.62 kcal Atomic # 7 Polarization: -76.06 SS G_CDS: -3.68 Total: -79.74 kcal Atomic # 8 Polarization: -13.85 SS G_CDS: -1.51 Total: -15.36 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -64.70 2.79 -61.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692222603.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.437 kcal (2) G-P(sol) polarization free energy of solvation -64.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds