Wall clock time and date at job start Mon Mar 30 2020 07:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00182 * 2 1 4 4 C 1.53006 * 109.46845 * 293.38632 * 3 2 1 5 5 N 1.46903 * 109.46996 * 291.70602 * 4 3 2 6 6 C 1.47438 * 110.99768 * 73.53050 * 5 4 3 7 7 C 1.54324 * 107.23111 * 123.25524 * 6 5 4 8 8 C 1.55145 * 103.01713 * 22.28440 * 7 6 5 9 9 H 1.08997 * 110.99233 * 82.43548 * 8 7 6 10 10 C 1.50701 * 110.99065 * 206.21420 * 8 7 6 11 11 H 1.07995 * 120.00072 * 118.54304 * 10 8 7 12 12 C 1.37871 * 119.99902 * 298.54965 * 10 8 7 13 13 N 1.31512 * 120.00365 * 359.97438 * 12 10 8 14 14 Si 1.86806 * 119.99933 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.46993 * 59.99567 * 14 12 10 16 16 H 1.48494 * 109.47135 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47056 * 299.99733 * 14 12 10 18 18 C 1.47843 * 110.99658 * 194.37575 * 5 4 3 19 19 C 1.52995 * 109.47133 * 53.38350 * 3 2 1 20 20 C 1.53002 * 109.47341 * 60.00218 * 19 3 2 21 21 C 1.53006 * 109.47052 * 59.99560 * 20 19 3 22 22 C 1.53002 * 109.47262 * 300.00662 * 21 20 19 23 23 C 1.52996 * 109.47180 * 59.99518 * 22 21 20 24 24 H 1.08996 * 109.47312 * 172.41314 * 1 2 3 25 25 H 1.08999 * 109.47349 * 292.42156 * 1 2 3 26 26 H 1.09005 * 109.46662 * 52.41848 * 1 2 3 27 27 H 1.09005 * 109.46703 * 171.70641 * 4 3 2 28 28 H 1.09004 * 109.47075 * 51.70744 * 4 3 2 29 29 H 1.09000 * 109.89163 * 242.66029 * 6 5 4 30 30 H 1.08998 * 109.89125 * 3.69285 * 6 5 4 31 31 H 1.09000 * 110.70608 * 140.66355 * 7 6 5 32 32 H 1.08997 * 110.70726 * 263.72365 * 7 6 5 33 33 H 0.97004 * 120.00470 * 180.02562 * 13 12 10 34 34 H 1.09000 * 110.37244 * 332.46475 * 18 5 4 35 35 H 1.08995 * 110.37362 * 94.80615 * 18 5 4 36 36 H 1.09007 * 109.47219 * 179.97438 * 19 3 2 37 37 H 1.08999 * 109.47765 * 300.00015 * 19 3 2 38 38 H 1.08997 * 109.46778 * 300.00037 * 20 19 3 39 39 H 1.08999 * 109.47495 * 179.97438 * 20 19 3 40 40 H 1.08999 * 109.47043 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.46830 * 60.00036 * 21 20 19 42 42 H 1.09008 * 109.46691 * 299.99576 * 22 21 20 43 43 H 1.08992 * 109.47009 * 180.02562 * 22 21 20 44 44 H 1.08999 * 109.47047 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47356 * 60.00354 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6947 2.0042 -1.3241 5 7 2.4143 1.3337 -2.4153 6 6 1.7981 0.0326 -2.7334 7 6 1.4254 0.0572 -4.2307 8 6 2.3641 1.1499 -4.8066 9 1 3.3538 0.7439 -5.0158 10 6 1.7690 1.7770 -6.0411 11 1 1.5413 2.8325 -6.0544 12 6 1.5152 1.0029 -7.1534 13 7 1.7929 -0.2825 -7.1375 14 14 0.7769 1.7800 -8.6834 15 1 1.6840 2.8432 -9.1854 16 1 0.6037 0.7422 -9.7313 17 1 -0.5432 2.3724 -8.3498 18 6 2.4165 2.1651 -3.6378 19 6 1.4318 2.1213 1.1578 20 6 1.7474 1.4226 2.4819 21 6 3.2639 1.3056 2.6480 22 6 3.8424 0.4897 1.4901 23 6 3.5267 1.1885 0.1662 24 1 -0.3634 -1.0186 -0.1357 25 1 -0.3634 0.3920 0.9500 26 1 -0.3633 0.6268 -0.8145 27 1 2.0083 3.0467 -1.2685 28 1 0.6222 1.9570 -1.5131 29 1 2.5089 -0.7712 -2.5414 30 1 0.9030 -0.1117 -2.1284 31 1 1.6281 -0.9083 -4.6942 32 1 0.3797 0.3347 -4.3631 33 1 1.6146 -0.8270 -7.9202 34 1 1.5399 2.8126 -3.6579 35 1 3.3291 2.7587 -3.6913 36 1 1.8755 3.1169 1.1581 37 1 0.3515 2.2047 1.0395 38 1 1.3040 0.4268 2.4818 39 1 1.3356 2.0040 3.3068 40 1 3.4887 0.8082 3.5915 41 1 3.7072 2.3013 2.6479 42 1 3.3990 -0.5061 1.4902 43 1 4.9226 0.4060 1.6088 44 1 3.9385 0.6070 -0.6587 45 1 3.9701 2.1842 0.1661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692808775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:43 Heat of formation + Delta-G solvation = -58.862387 kcal Electronic energy + Delta-G solvation = -22130.064076 eV Core-core repulsion = 19146.641027 eV Total energy + Delta-G solvation = -2983.423050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.10289 -37.47962 -35.69356 -33.18845 -31.46141 -30.78700 -29.08889 -28.07410 -26.51336 -25.31406 -23.81822 -22.43890 -21.05138 -19.79824 -19.59018 -19.19848 -16.45172 -16.16829 -15.46168 -15.32263 -15.02459 -14.63669 -14.33805 -14.12879 -13.76938 -13.35652 -12.76889 -12.47419 -12.37510 -12.26929 -12.11102 -12.02382 -11.72210 -11.51590 -11.13490 -10.99088 -10.97831 -10.83628 -10.69647 -10.49081 -10.44623 -10.27829 -10.13632 -9.77978 -9.49348 -9.27718 -9.03986 -8.78548 -8.35886 -7.46773 -5.99546 -4.03196 3.31963 3.36867 3.39072 3.97250 4.42738 4.58960 4.78913 4.80294 4.98570 5.17766 5.32575 5.34250 5.38505 5.43622 5.50223 5.57776 5.59214 5.67810 5.73591 5.74564 5.82233 5.92652 5.97386 6.07249 6.09397 6.19627 6.24620 6.32762 6.36650 6.40101 6.52458 6.56581 6.67393 6.73795 6.89908 7.24916 7.26838 7.49631 7.70443 7.81146 7.83868 7.95769 8.06261 8.45919 8.98594 9.60796 11.09835 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040545 B = 0.004377 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.433310 B = 6395.419111 C = 6471.833568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.364 6.364 3 C 0.128 3.872 4 C 0.028 3.972 5 N -0.524 5.524 6 C 0.043 3.957 7 C -0.118 4.118 8 C 0.050 3.950 9 H 0.035 0.965 10 C -0.516 4.516 11 H 0.054 0.946 12 C 0.065 3.935 13 N -0.887 5.887 14 Si 0.890 3.110 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.278 1.278 18 C 0.045 3.955 19 C -0.146 4.146 20 C -0.113 4.113 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.091 4.091 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.033 0.967 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.260 0.740 34 H 0.032 0.968 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.088 0.912 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 2.382 18.044 18.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.283 6.283 3 C 0.088 3.912 4 C -0.101 4.101 5 N -0.248 5.248 6 C -0.084 4.084 7 C -0.157 4.157 8 C 0.031 3.969 9 H 0.054 0.946 10 C -0.555 4.555 11 H 0.072 0.928 12 C -0.137 4.137 13 N -0.525 5.525 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.204 1.204 18 C -0.082 4.082 19 C -0.184 4.184 20 C -0.150 4.150 21 C -0.155 4.155 22 C -0.156 4.156 23 C -0.128 4.128 24 H 0.099 0.901 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.106 0.894 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.031 1.971 18.100 18.207 hybrid contribution -1.648 0.812 -1.190 2.189 sum -1.617 2.783 16.910 17.213 Atomic orbital electron populations 1.22750 0.82667 1.02331 0.99592 1.88004 1.18395 1.27273 1.94625 1.21490 0.94486 0.83017 0.92219 1.22739 0.96416 0.98094 0.92851 1.63529 1.50736 1.03916 1.06625 1.22962 0.97073 0.91061 0.97304 1.22699 0.99290 1.02102 0.91636 1.19702 0.95701 0.90726 0.90814 0.94640 1.21014 1.41992 0.94859 0.97587 0.92796 1.24954 0.95528 0.94835 0.98424 1.69960 1.47844 1.05061 1.29684 0.86696 0.79688 0.78947 0.82868 1.20254 1.21304 1.20414 1.23173 0.98723 0.96510 0.89771 1.22154 1.00912 0.99762 0.95564 1.21432 0.96514 1.00878 0.96218 1.21528 0.95493 1.00148 0.98327 1.21518 0.99785 0.99860 0.94438 1.21340 0.92366 1.01272 0.97865 0.90123 0.94415 0.93820 0.91075 0.94904 0.92164 0.93578 0.91089 0.93892 0.93019 0.94985 0.92259 0.91146 0.91954 0.91567 0.92618 0.92560 0.92430 0.91364 0.92495 0.89350 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.63 101.05 0.87 1.16 16 2 O -0.36 -5.32 7.32 -35.23 -0.26 -5.58 16 3 C 0.13 1.74 0.45 -90.62 -0.04 1.70 16 4 C 0.03 0.45 3.84 -3.82 -0.01 0.43 16 5 N -0.52 -10.00 4.02 -231.25 -0.93 -10.93 16 6 C 0.04 0.88 5.81 -2.84 -0.02 0.86 16 7 C -0.12 -2.84 5.64 -24.90 -0.14 -2.98 16 8 C 0.05 1.26 2.96 -89.63 -0.26 1.00 16 9 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 10 C -0.52 -14.31 8.55 -34.44 -0.29 -14.60 16 11 H 0.05 1.47 7.79 -52.49 -0.41 1.06 16 12 C 0.06 1.80 5.34 -17.82 -0.10 1.71 16 13 N -0.89 -25.69 12.12 55.43 0.67 -25.02 16 14 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C 0.05 0.97 6.10 -2.30 -0.01 0.96 16 19 C -0.15 -1.63 4.19 -26.73 -0.11 -1.75 16 20 C -0.11 -1.15 5.66 -26.73 -0.15 -1.30 16 21 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 22 C -0.12 -1.37 5.78 -26.73 -0.15 -1.53 16 23 C -0.09 -1.23 4.69 -26.73 -0.13 -1.35 16 24 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.04 0.40 6.29 -51.93 -0.33 0.08 16 26 H 0.04 0.59 5.48 -51.93 -0.28 0.30 16 27 H 0.07 1.07 8.01 -51.93 -0.42 0.66 16 28 H 0.03 0.54 5.99 -51.93 -0.31 0.23 16 29 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.05 0.86 4.25 -51.93 -0.22 0.64 16 31 H 0.07 1.84 7.53 -51.93 -0.39 1.45 16 32 H 0.04 1.07 8.04 -51.93 -0.42 0.65 16 33 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 34 H 0.03 0.69 7.70 -51.93 -0.40 0.29 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.06 0.68 6.65 -51.93 -0.35 0.33 16 38 H 0.07 0.72 7.12 -51.93 -0.37 0.35 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.87 7.68 -51.92 -0.40 0.47 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.41 7.40 -51.93 -0.38 1.02 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -28.39 327.52 -9.35 -37.73 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -8.04 Total: -0.49 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: -0.71 Total: -17.03 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: -0.26 Total: -35.95 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.26 Total: -5.58 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.39 -9.35 -37.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692808775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.128 kcal (2) G-P(sol) polarization free energy of solvation -28.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds