Wall clock time and date at job start Mon Mar 30 2020 07:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00182 * 2 1 4 4 C 1.53006 * 109.46845 * 293.38632 * 3 2 1 5 5 N 1.46903 * 109.46996 * 291.70602 * 4 3 2 6 6 C 1.47438 * 110.99768 * 73.53050 * 5 4 3 7 7 C 1.54324 * 107.23111 * 123.25524 * 6 5 4 8 8 C 1.55145 * 103.01713 * 22.28440 * 7 6 5 9 9 H 1.08997 * 110.99233 * 82.43548 * 8 7 6 10 10 C 1.50701 * 110.99065 * 206.21420 * 8 7 6 11 11 H 1.07995 * 120.00072 * 118.54304 * 10 8 7 12 12 C 1.37871 * 119.99902 * 298.54965 * 10 8 7 13 13 N 1.31512 * 120.00365 * 359.97438 * 12 10 8 14 14 Si 1.86806 * 119.99933 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.46993 * 59.99567 * 14 12 10 16 16 H 1.48494 * 109.47135 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.47056 * 299.99733 * 14 12 10 18 18 C 1.47843 * 110.99658 * 194.37575 * 5 4 3 19 19 C 1.52995 * 109.47133 * 53.38350 * 3 2 1 20 20 C 1.53002 * 109.47341 * 60.00218 * 19 3 2 21 21 C 1.53006 * 109.47052 * 59.99560 * 20 19 3 22 22 C 1.53002 * 109.47262 * 300.00662 * 21 20 19 23 23 C 1.52996 * 109.47180 * 59.99518 * 22 21 20 24 24 H 1.08996 * 109.47312 * 172.41314 * 1 2 3 25 25 H 1.08999 * 109.47349 * 292.42156 * 1 2 3 26 26 H 1.09005 * 109.46662 * 52.41848 * 1 2 3 27 27 H 1.09005 * 109.46703 * 171.70641 * 4 3 2 28 28 H 1.09004 * 109.47075 * 51.70744 * 4 3 2 29 29 H 1.09000 * 109.89163 * 242.66029 * 6 5 4 30 30 H 1.08998 * 109.89125 * 3.69285 * 6 5 4 31 31 H 1.09000 * 110.70608 * 140.66355 * 7 6 5 32 32 H 1.08997 * 110.70726 * 263.72365 * 7 6 5 33 33 H 0.97004 * 120.00470 * 180.02562 * 13 12 10 34 34 H 1.09000 * 110.37244 * 332.46475 * 18 5 4 35 35 H 1.08995 * 110.37362 * 94.80615 * 18 5 4 36 36 H 1.09007 * 109.47219 * 179.97438 * 19 3 2 37 37 H 1.08999 * 109.47765 * 300.00015 * 19 3 2 38 38 H 1.08997 * 109.46778 * 300.00037 * 20 19 3 39 39 H 1.08999 * 109.47495 * 179.97438 * 20 19 3 40 40 H 1.08999 * 109.47043 * 179.97438 * 21 20 19 41 41 H 1.08998 * 109.46830 * 60.00036 * 21 20 19 42 42 H 1.09008 * 109.46691 * 299.99576 * 22 21 20 43 43 H 1.08992 * 109.47009 * 180.02562 * 22 21 20 44 44 H 1.08999 * 109.47047 * 180.02562 * 23 22 21 45 45 H 1.08998 * 109.47356 * 60.00354 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.6947 2.0042 -1.3241 5 7 2.4143 1.3337 -2.4153 6 6 1.7981 0.0326 -2.7334 7 6 1.4254 0.0572 -4.2307 8 6 2.3641 1.1499 -4.8066 9 1 3.3538 0.7439 -5.0158 10 6 1.7690 1.7770 -6.0411 11 1 1.5413 2.8325 -6.0544 12 6 1.5152 1.0029 -7.1534 13 7 1.7929 -0.2825 -7.1375 14 14 0.7769 1.7800 -8.6834 15 1 1.6840 2.8432 -9.1854 16 1 0.6037 0.7422 -9.7313 17 1 -0.5432 2.3724 -8.3498 18 6 2.4165 2.1651 -3.6378 19 6 1.4318 2.1213 1.1578 20 6 1.7474 1.4226 2.4819 21 6 3.2639 1.3056 2.6480 22 6 3.8424 0.4897 1.4901 23 6 3.5267 1.1885 0.1662 24 1 -0.3634 -1.0186 -0.1357 25 1 -0.3634 0.3920 0.9500 26 1 -0.3633 0.6268 -0.8145 27 1 2.0083 3.0467 -1.2685 28 1 0.6222 1.9570 -1.5131 29 1 2.5089 -0.7712 -2.5414 30 1 0.9030 -0.1117 -2.1284 31 1 1.6281 -0.9083 -4.6942 32 1 0.3797 0.3347 -4.3631 33 1 1.6146 -0.8270 -7.9202 34 1 1.5399 2.8126 -3.6579 35 1 3.3291 2.7587 -3.6913 36 1 1.8755 3.1169 1.1581 37 1 0.3515 2.2047 1.0395 38 1 1.3040 0.4268 2.4818 39 1 1.3356 2.0040 3.3068 40 1 3.4887 0.8082 3.5915 41 1 3.7072 2.3013 2.6479 42 1 3.3990 -0.5061 1.4902 43 1 4.9226 0.4060 1.6088 44 1 3.9385 0.6070 -0.6587 45 1 3.9701 2.1842 0.1661 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692808775.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:42 Heat of formation + Delta-G solvation = -74.599004 kcal Electronic energy + Delta-G solvation = -22130.746467 eV Core-core repulsion = 19146.641027 eV Total energy + Delta-G solvation = -2984.105441 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.24500 -39.08639 -36.68494 -35.10951 -33.00742 -31.70299 -30.58020 -29.88121 -27.58313 -26.88932 -25.49768 -23.39261 -22.29782 -21.48116 -21.14200 -20.37311 -18.46245 -17.29267 -16.84365 -16.58502 -16.40610 -16.21493 -15.69142 -15.63131 -14.78205 -14.35718 -14.26332 -14.09221 -13.85431 -13.71128 -13.30550 -13.16981 -12.99136 -12.94801 -12.75443 -12.71289 -12.43361 -12.19113 -12.08277 -11.93071 -11.88429 -11.44099 -11.35427 -11.22370 -11.13845 -10.90608 -10.75742 -10.49549 -10.20087 -9.05408 -8.14212 -6.25828 1.40222 1.41831 1.49593 2.41089 2.91488 3.16044 3.23381 3.80820 3.86572 3.94043 4.15081 4.17269 4.34225 4.40424 4.41986 4.44461 4.52086 4.57281 4.65347 4.68115 4.69650 4.71048 4.77347 4.83482 4.87007 4.96281 4.98272 5.04719 5.12754 5.23815 5.29039 5.33578 5.35399 5.37443 5.47461 5.57519 5.58986 5.66664 5.80429 5.91166 6.09175 6.34007 6.36827 6.48030 6.83558 7.42208 8.94573 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040545 B = 0.004377 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.433310 B = 6395.419111 C = 6471.833568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.382 6.382 3 C 0.130 3.870 4 C 0.025 3.975 5 N -0.522 5.522 6 C 0.060 3.940 7 C -0.109 4.109 8 C 0.040 3.960 9 H 0.001 0.999 10 C -0.536 4.536 11 H 0.055 0.945 12 C 0.014 3.986 13 N -0.918 5.918 14 Si 0.957 3.043 15 H -0.269 1.269 16 H -0.284 1.284 17 H -0.271 1.271 18 C 0.059 3.941 19 C -0.141 4.141 20 C -0.110 4.110 21 C -0.114 4.114 22 C -0.114 4.114 23 C -0.091 4.091 24 H 0.087 0.913 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.084 0.916 28 H 0.030 0.970 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.043 0.957 32 H 0.028 0.972 33 H 0.261 0.739 34 H 0.032 0.968 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 3.788 19.762 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.302 6.302 3 C 0.090 3.910 4 C -0.103 4.103 5 N -0.246 5.246 6 C -0.068 4.068 7 C -0.148 4.148 8 C 0.021 3.979 9 H 0.019 0.981 10 C -0.574 4.574 11 H 0.073 0.927 12 C -0.185 4.185 13 N -0.557 5.557 14 Si 0.782 3.218 15 H -0.194 1.194 16 H -0.210 1.210 17 H -0.196 1.196 18 C -0.069 4.069 19 C -0.179 4.179 20 C -0.147 4.147 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.128 4.128 24 H 0.105 0.895 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.050 0.950 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.662 3.388 19.836 20.134 hybrid contribution -1.408 0.351 -1.721 2.251 sum -2.070 3.739 18.115 18.612 Atomic orbital electron populations 1.22853 0.81689 1.02751 1.00303 1.87989 1.19547 1.27936 1.94695 1.21501 0.94695 0.82945 0.91848 1.22912 0.95865 0.98849 0.92718 1.63514 1.51479 1.03250 1.06340 1.22760 0.97616 0.91744 0.94669 1.22492 0.98019 1.00106 0.94157 1.19659 0.93938 0.92236 0.92108 0.98084 1.21367 1.42197 0.95085 0.98786 0.92682 1.25778 0.95880 0.95275 1.01571 1.70100 1.48698 1.06356 1.30505 0.85633 0.79078 0.78156 0.78923 1.19441 1.20956 1.19599 1.22947 0.99039 0.95650 0.89239 1.22119 1.01161 0.99798 0.94837 1.21425 0.96600 1.00604 0.96116 1.21517 0.95345 1.00384 0.97930 1.21465 1.00320 0.99192 0.94196 1.21311 0.92297 1.01347 0.97879 0.89473 0.92252 0.94939 0.89796 0.95164 0.92804 0.91790 0.93860 0.95285 0.93030 0.94974 0.91563 0.90089 0.91379 0.92394 0.90671 0.91276 0.91507 0.92801 0.91791 0.92416 0.90700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 8.63 113.37 0.98 1.45 16 2 O -0.38 -10.68 7.32 -148.98 -1.09 -11.77 16 3 C 0.13 3.31 0.45 -10.79 0.00 3.31 16 4 C 0.03 0.77 3.84 86.30 0.33 1.10 16 5 N -0.52 -19.82 4.02 -885.53 -3.56 -23.38 16 6 C 0.06 2.44 5.81 86.65 0.50 2.95 16 7 C -0.11 -5.41 5.64 31.78 0.18 -5.23 16 8 C 0.04 2.09 2.96 -10.15 -0.03 2.06 16 9 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 10 C -0.54 -30.25 8.55 25.60 0.22 -30.03 16 11 H 0.05 3.02 7.79 -2.91 -0.02 2.99 16 12 C 0.01 0.80 5.34 84.65 0.45 1.25 16 13 N -0.92 -54.52 12.12 21.44 0.26 -54.26 16 14 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 18 C 0.06 2.53 6.10 86.77 0.53 3.06 16 19 C -0.14 -2.74 4.19 30.59 0.13 -2.61 16 20 C -0.11 -1.88 5.66 30.60 0.17 -1.70 16 21 C -0.11 -1.94 5.92 30.60 0.18 -1.76 16 22 C -0.11 -2.46 5.78 30.59 0.18 -2.28 16 23 C -0.09 -2.34 4.69 30.59 0.14 -2.19 16 24 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 25 H 0.06 1.12 6.29 -2.39 -0.02 1.11 16 26 H 0.03 0.82 5.48 -2.38 -0.01 0.81 16 27 H 0.08 2.34 8.01 -2.38 -0.02 2.33 16 28 H 0.03 0.95 5.99 -2.39 -0.01 0.94 16 29 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.06 2.38 4.25 -2.39 -0.01 2.37 16 31 H 0.04 2.35 7.53 -2.39 -0.02 2.33 16 32 H 0.03 1.48 8.04 -2.39 -0.02 1.46 16 33 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 34 H 0.03 1.38 7.70 -2.39 -0.02 1.36 16 35 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.07 1.26 6.65 -2.39 -0.02 1.24 16 38 H 0.06 1.10 7.12 -2.39 -0.02 1.08 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.05 1.31 7.68 -2.38 -0.02 1.30 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.83 7.40 -2.39 -0.02 1.82 16 45 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -61.84 327.52 2.54 -59.30 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.94 Total: 14.62 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 3.96 Total: -30.64 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -3.30 Total: -77.64 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.09 Total: -11.77 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -61.84 2.54 -59.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692808775.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.299 kcal (2) G-P(sol) polarization free energy of solvation -61.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds