Wall clock time and date at job start Mon Mar 30 2020 07:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99752 * 2 1 4 4 C 1.53002 * 109.47047 * 65.80645 * 3 2 1 5 5 N 1.46900 * 109.47212 * 66.38777 * 4 3 2 6 6 C 1.47903 * 111.00088 * 293.52854 * 5 4 3 7 7 C 1.53995 * 107.05872 * 214.15325 * 6 5 4 8 8 C 1.54603 * 105.13849 * 1.22343 * 7 6 5 9 9 H 1.09001 * 110.72407 * 263.60087 * 8 7 6 10 10 C 1.50704 * 110.72194 * 140.49245 * 8 7 6 11 11 H 1.08002 * 120.00134 * 241.45450 * 10 8 7 12 12 C 1.37872 * 119.99910 * 61.45644 * 10 8 7 13 13 N 1.31513 * 120.00374 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99897 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47245 * 89.99811 * 14 12 10 16 16 H 1.48503 * 109.47057 * 209.99991 * 14 12 10 17 17 H 1.48503 * 109.47181 * 329.99972 * 14 12 10 18 18 C 1.48533 * 111.00377 * 176.13031 * 5 4 3 19 19 C 1.52999 * 109.47091 * 185.80445 * 3 2 1 20 20 C 1.53002 * 109.47012 * 60.00179 * 19 3 2 21 21 C 1.53000 * 109.47196 * 59.99926 * 20 19 3 22 22 C 1.53009 * 109.46837 * 300.00101 * 21 20 19 23 23 C 1.52992 * 109.47308 * 305.80760 * 3 2 1 24 24 H 1.08996 * 109.46989 * 295.44051 * 1 2 3 25 25 H 1.08999 * 109.46886 * 55.43950 * 1 2 3 26 26 H 1.08995 * 109.46757 * 175.44122 * 1 2 3 27 27 H 1.09006 * 109.47310 * 306.39470 * 4 3 2 28 28 H 1.08990 * 109.47093 * 186.38985 * 4 3 2 29 29 H 1.08999 * 109.91653 * 333.50319 * 6 5 4 30 30 H 1.09001 * 109.92054 * 94.80593 * 6 5 4 31 31 H 1.08997 * 110.31106 * 120.13952 * 7 6 5 32 32 H 1.09001 * 110.31190 * 242.31480 * 7 6 5 33 33 H 0.96996 * 120.00240 * 180.02562 * 13 12 10 34 34 H 1.09000 * 110.66908 * 278.16038 * 18 5 4 35 35 H 1.08996 * 110.66606 * 41.28693 * 18 5 4 36 36 H 1.08998 * 109.47223 * 180.02562 * 19 3 2 37 37 H 1.09005 * 109.47333 * 300.00186 * 19 3 2 38 38 H 1.09007 * 109.47288 * 299.99822 * 20 19 3 39 39 H 1.08997 * 109.47298 * 180.02562 * 20 19 3 40 40 H 1.08994 * 109.47266 * 180.02562 * 21 20 19 41 41 H 1.08993 * 109.47150 * 59.99599 * 21 20 19 42 42 H 1.08993 * 109.46840 * 299.99687 * 22 21 20 43 43 H 1.09003 * 109.46465 * 179.97438 * 22 21 20 44 44 H 1.09005 * 109.46943 * 59.99593 * 23 3 2 45 45 H 1.08992 * 109.47726 * 179.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.6776 2.0119 1.3158 5 7 2.3467 1.3202 2.4257 6 6 1.7919 -0.0376 2.6155 7 6 1.8317 -0.3348 4.1260 8 6 2.4102 0.9441 4.7740 9 1 3.4825 0.8411 4.9400 10 6 1.6998 1.2552 6.0662 11 1 1.1567 2.1825 6.1741 12 6 1.7433 0.3562 7.1105 13 7 2.4041 -0.7732 6.9790 14 14 0.8634 0.7422 8.7124 15 1 -0.5270 0.2241 8.6509 16 1 1.5827 0.0971 9.8402 17 1 0.8349 2.2124 8.9198 18 6 2.1221 2.0324 3.7096 19 6 3.5287 1.1878 -0.1459 20 6 3.8614 0.4815 -1.4617 21 6 3.2978 1.2906 -2.6316 22 6 1.7793 1.4084 -2.4856 23 6 1.4467 2.1147 -1.1698 24 1 -0.3633 0.4414 0.9280 25 1 -0.3633 0.5830 -0.8463 26 1 -0.3633 -1.0244 -0.0817 27 1 0.5993 1.9952 1.4747 28 1 2.0223 3.0449 1.2709 29 1 0.7629 -0.0717 2.2574 30 1 2.3994 -0.7656 2.0778 31 1 0.8262 -0.5271 4.5004 32 1 2.4805 -1.1873 4.3269 33 1 2.4344 -1.4058 7.7136 34 1 2.8168 2.8659 3.8139 35 1 1.0911 2.3784 3.7824 36 1 3.9720 2.1836 -0.1454 37 1 3.9302 0.6113 0.6876 38 1 3.4181 -0.5144 -1.4617 39 1 4.9431 0.3972 -1.5655 40 1 3.5344 0.7872 -3.5689 41 1 3.7410 2.2864 -2.6315 42 1 1.3360 0.4126 -2.4856 43 1 1.3779 1.9852 -3.3188 44 1 0.3649 2.1985 -1.0658 45 1 1.8896 3.1106 -1.1696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000692808780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:46 Heat of formation + Delta-G solvation = -57.818354 kcal Electronic energy + Delta-G solvation = -22159.669127 eV Core-core repulsion = 19176.291350 eV Total energy + Delta-G solvation = -2983.377777 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.12942 -37.43951 -35.69127 -33.21314 -31.47449 -30.81474 -29.12884 -28.02903 -26.52261 -25.29225 -23.77267 -22.44608 -21.05874 -19.87785 -19.62640 -19.12760 -16.36558 -16.16362 -15.52818 -15.33552 -14.98987 -14.60610 -14.38643 -14.06915 -13.76209 -13.37373 -13.01730 -12.60391 -12.36043 -12.19895 -12.11422 -11.97083 -11.62892 -11.39589 -11.18736 -11.00976 -10.99379 -10.82002 -10.64449 -10.51820 -10.38765 -10.27670 -10.12282 -9.77559 -9.54044 -9.28837 -9.00990 -8.68237 -8.34782 -7.58399 -5.97929 -4.01307 3.31516 3.38438 3.41395 3.96679 4.43804 4.58437 4.77565 4.78716 4.97763 5.16400 5.31792 5.34300 5.37229 5.38709 5.52215 5.56521 5.58793 5.68722 5.72338 5.74607 5.81149 5.91108 5.98214 6.05485 6.08988 6.18229 6.22333 6.29530 6.37931 6.41230 6.50811 6.53686 6.65761 6.75212 6.93841 7.24661 7.31521 7.48265 7.70488 7.75076 7.82925 7.95373 8.09854 8.49991 9.01220 9.62543 11.11723 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040839 B = 0.004395 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.462211 B = 6369.458621 C = 6428.894553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.364 6.364 3 C 0.127 3.873 4 C 0.024 3.976 5 N -0.512 5.512 6 C 0.044 3.956 7 C -0.104 4.104 8 C 0.054 3.946 9 H 0.035 0.965 10 C -0.516 4.516 11 H 0.054 0.946 12 C 0.064 3.936 13 N -0.887 5.887 14 Si 0.889 3.111 15 H -0.282 1.282 16 H -0.286 1.286 17 H -0.275 1.275 18 C 0.040 3.960 19 C -0.093 4.093 20 C -0.118 4.118 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.146 4.146 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.080 0.920 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.030 0.970 30 H 0.066 0.934 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.259 0.741 34 H 0.060 0.940 35 H 0.030 0.970 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 3.573 -18.007 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.283 6.283 3 C 0.087 3.913 4 C -0.105 4.105 5 N -0.236 5.236 6 C -0.084 4.084 7 C -0.143 4.143 8 C 0.035 3.965 9 H 0.053 0.947 10 C -0.555 4.555 11 H 0.072 0.928 12 C -0.138 4.138 13 N -0.525 5.525 14 Si 0.717 3.283 15 H -0.208 1.208 16 H -0.212 1.212 17 H -0.200 1.200 18 C -0.088 4.088 19 C -0.130 4.130 20 C -0.156 4.156 21 C -0.155 4.155 22 C -0.150 4.150 23 C -0.184 4.184 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.048 0.952 28 H 0.091 0.909 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.768 3.220 -18.041 18.343 hybrid contribution -1.758 0.477 1.135 2.146 sum -2.525 3.698 -16.906 17.489 Atomic orbital electron populations 1.22807 0.82644 1.02190 0.99854 1.88015 1.18451 1.27134 1.94662 1.21473 0.94544 0.83077 0.92163 1.22764 0.96620 0.98339 0.92823 1.64726 1.52519 1.02957 1.03419 1.23006 0.96698 0.90335 0.98357 1.22353 1.00777 1.00666 0.90527 1.19504 0.96853 0.89018 0.91159 0.94720 1.21100 1.32550 1.04073 0.97761 0.92795 1.24954 0.95332 0.95121 0.98397 1.69983 1.41502 1.08872 1.32101 0.86652 0.79669 0.78454 0.83541 1.20816 1.21231 1.19960 1.23368 0.97958 0.98187 0.89240 1.21367 0.92234 1.01303 0.98093 1.21515 0.99857 0.99870 0.94346 1.21526 0.95485 1.00161 0.98310 1.21426 0.96500 1.00864 0.96235 1.22141 1.00974 0.99768 0.95547 0.93907 0.94173 0.90135 0.95182 0.90935 0.95191 0.91590 0.93216 0.92353 0.93091 0.92123 0.95173 0.91391 0.89389 0.91336 0.92444 0.92534 0.92417 0.91558 0.92609 0.91858 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.17 101.05 0.93 1.20 16 2 O -0.36 -5.31 6.80 -35.23 -0.24 -5.55 16 3 C 0.13 1.72 0.40 -90.62 -0.04 1.68 16 4 C 0.02 0.38 3.90 -3.82 -0.01 0.36 16 5 N -0.51 -9.81 4.25 -230.46 -0.98 -10.79 16 6 C 0.04 0.88 5.06 -2.75 -0.01 0.87 16 7 C -0.10 -2.53 5.51 -25.37 -0.14 -2.67 16 8 C 0.05 1.37 2.98 -89.91 -0.27 1.11 16 9 H 0.03 0.97 8.14 -51.93 -0.42 0.55 16 10 C -0.52 -14.35 8.43 -34.44 -0.29 -14.64 16 11 H 0.05 1.48 7.78 -52.49 -0.41 1.07 16 12 C 0.06 1.79 5.33 -17.82 -0.10 1.70 16 13 N -0.89 -25.79 12.44 55.43 0.69 -25.10 16 14 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.04 0.85 5.98 -1.90 -0.01 0.84 16 19 C -0.09 -1.25 4.71 -26.73 -0.13 -1.37 16 20 C -0.12 -1.38 5.78 -26.73 -0.15 -1.53 16 21 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 22 C -0.11 -1.14 5.70 -26.73 -0.15 -1.29 16 23 C -0.15 -1.62 4.20 -26.74 -0.11 -1.73 16 24 H 0.04 0.59 5.26 -51.93 -0.27 0.32 16 25 H 0.04 0.43 5.90 -51.93 -0.31 0.13 16 26 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.03 0.49 6.32 -51.93 -0.33 0.16 16 28 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.03 0.58 4.82 -51.93 -0.25 0.33 16 30 H 0.07 1.34 7.67 -51.93 -0.40 0.94 16 31 H 0.05 1.28 7.84 -51.93 -0.41 0.87 16 32 H 0.06 1.50 8.04 -51.93 -0.42 1.09 16 33 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.41 7.44 -51.93 -0.39 1.03 16 38 H 0.07 0.88 7.68 -51.93 -0.40 0.48 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.72 7.40 -51.93 -0.38 0.34 16 43 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.68 6.38 -51.93 -0.33 0.34 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 327.60 15.07 4.94 4.94 Total: -1.00 -28.56 327.60 -9.32 -37.88 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -8.06 Total: -0.99 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -0.65 Total: -16.81 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.29 Total: -35.89 kcal Atomic # 8 Polarization: -5.31 SS G_CDS: -0.24 Total: -5.55 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.56 -9.32 -37.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692808780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.936 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds