Wall clock time and date at job start Mon Mar 30 2020 07:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42908 * 113.99752 * 2 1 4 4 C 1.53002 * 109.47047 * 65.80645 * 3 2 1 5 5 N 1.46900 * 109.47212 * 66.38777 * 4 3 2 6 6 C 1.47903 * 111.00088 * 293.52854 * 5 4 3 7 7 C 1.53995 * 107.05872 * 214.15325 * 6 5 4 8 8 C 1.54603 * 105.13849 * 1.22343 * 7 6 5 9 9 H 1.09001 * 110.72407 * 263.60087 * 8 7 6 10 10 C 1.50704 * 110.72194 * 140.49245 * 8 7 6 11 11 H 1.08002 * 120.00134 * 241.45450 * 10 8 7 12 12 C 1.37872 * 119.99910 * 61.45644 * 10 8 7 13 13 N 1.31513 * 120.00374 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99897 * 179.97438 * 12 10 8 15 15 H 1.48506 * 109.47245 * 89.99811 * 14 12 10 16 16 H 1.48503 * 109.47057 * 209.99991 * 14 12 10 17 17 H 1.48503 * 109.47181 * 329.99972 * 14 12 10 18 18 C 1.48533 * 111.00377 * 176.13031 * 5 4 3 19 19 C 1.52999 * 109.47091 * 185.80445 * 3 2 1 20 20 C 1.53002 * 109.47012 * 60.00179 * 19 3 2 21 21 C 1.53000 * 109.47196 * 59.99926 * 20 19 3 22 22 C 1.53009 * 109.46837 * 300.00101 * 21 20 19 23 23 C 1.52992 * 109.47308 * 305.80760 * 3 2 1 24 24 H 1.08996 * 109.46989 * 295.44051 * 1 2 3 25 25 H 1.08999 * 109.46886 * 55.43950 * 1 2 3 26 26 H 1.08995 * 109.46757 * 175.44122 * 1 2 3 27 27 H 1.09006 * 109.47310 * 306.39470 * 4 3 2 28 28 H 1.08990 * 109.47093 * 186.38985 * 4 3 2 29 29 H 1.08999 * 109.91653 * 333.50319 * 6 5 4 30 30 H 1.09001 * 109.92054 * 94.80593 * 6 5 4 31 31 H 1.08997 * 110.31106 * 120.13952 * 7 6 5 32 32 H 1.09001 * 110.31190 * 242.31480 * 7 6 5 33 33 H 0.96996 * 120.00240 * 180.02562 * 13 12 10 34 34 H 1.09000 * 110.66908 * 278.16038 * 18 5 4 35 35 H 1.08996 * 110.66606 * 41.28693 * 18 5 4 36 36 H 1.08998 * 109.47223 * 180.02562 * 19 3 2 37 37 H 1.09005 * 109.47333 * 300.00186 * 19 3 2 38 38 H 1.09007 * 109.47288 * 299.99822 * 20 19 3 39 39 H 1.08997 * 109.47298 * 180.02562 * 20 19 3 40 40 H 1.08994 * 109.47266 * 180.02562 * 21 20 19 41 41 H 1.08993 * 109.47150 * 59.99599 * 21 20 19 42 42 H 1.08993 * 109.46840 * 299.99687 * 22 21 20 43 43 H 1.09003 * 109.46465 * 179.97438 * 22 21 20 44 44 H 1.09005 * 109.46943 * 59.99593 * 23 3 2 45 45 H 1.08992 * 109.47726 * 179.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 1.6776 2.0119 1.3158 5 7 2.3467 1.3202 2.4257 6 6 1.7919 -0.0376 2.6155 7 6 1.8317 -0.3348 4.1260 8 6 2.4102 0.9441 4.7740 9 1 3.4825 0.8411 4.9400 10 6 1.6998 1.2552 6.0662 11 1 1.1567 2.1825 6.1741 12 6 1.7433 0.3562 7.1105 13 7 2.4041 -0.7732 6.9790 14 14 0.8634 0.7422 8.7124 15 1 -0.5270 0.2241 8.6509 16 1 1.5827 0.0971 9.8402 17 1 0.8349 2.2124 8.9198 18 6 2.1221 2.0324 3.7096 19 6 3.5287 1.1878 -0.1459 20 6 3.8614 0.4815 -1.4617 21 6 3.2978 1.2906 -2.6316 22 6 1.7793 1.4084 -2.4856 23 6 1.4467 2.1147 -1.1698 24 1 -0.3633 0.4414 0.9280 25 1 -0.3633 0.5830 -0.8463 26 1 -0.3633 -1.0244 -0.0817 27 1 0.5993 1.9952 1.4747 28 1 2.0223 3.0449 1.2709 29 1 0.7629 -0.0717 2.2574 30 1 2.3994 -0.7656 2.0778 31 1 0.8262 -0.5271 4.5004 32 1 2.4805 -1.1873 4.3269 33 1 2.4344 -1.4058 7.7136 34 1 2.8168 2.8659 3.8139 35 1 1.0911 2.3784 3.7824 36 1 3.9720 2.1836 -0.1454 37 1 3.9302 0.6113 0.6876 38 1 3.4181 -0.5144 -1.4617 39 1 4.9431 0.3972 -1.5655 40 1 3.5344 0.7872 -3.5689 41 1 3.7410 2.2864 -2.6315 42 1 1.3360 0.4126 -2.4856 43 1 1.3779 1.9852 -3.3188 44 1 0.3649 2.1985 -1.0658 45 1 1.8896 3.1106 -1.1696 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000692808780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:45 Heat of formation + Delta-G solvation = -73.942442 kcal Electronic energy + Delta-G solvation = -22160.368320 eV Core-core repulsion = 19176.291350 eV Total energy + Delta-G solvation = -2984.076970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.26542 -39.04719 -36.68566 -35.12652 -33.03866 -31.72769 -30.59895 -29.85963 -27.57802 -26.88114 -25.45127 -23.40404 -22.31829 -21.47717 -21.17588 -20.36357 -18.38764 -17.25785 -16.88715 -16.67594 -16.37056 -16.15816 -15.71264 -15.59012 -14.83547 -14.57931 -14.25173 -14.15107 -13.90871 -13.46532 -13.29032 -13.16031 -13.01593 -12.93681 -12.72938 -12.63012 -12.42622 -12.15304 -12.11534 -11.90664 -11.87858 -11.52841 -11.37759 -11.22777 -11.13435 -10.81867 -10.74590 -10.50110 -10.19493 -9.15156 -8.13676 -6.24971 1.40222 1.40793 1.51507 2.41659 2.92372 3.16828 3.23670 3.78296 3.85531 3.93418 4.16885 4.17457 4.31938 4.35793 4.42372 4.48879 4.49443 4.56201 4.65424 4.67250 4.68823 4.70569 4.75509 4.83742 4.87803 4.96873 4.99749 5.04185 5.13592 5.23082 5.29171 5.33549 5.36167 5.37383 5.47033 5.56781 5.60708 5.65551 5.80947 5.86973 6.05029 6.30487 6.39883 6.47221 6.85444 7.43039 8.95734 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.040839 B = 0.004395 C = 0.004354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.462211 B = 6369.458621 C = 6428.894553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.382 6.382 3 C 0.128 3.872 4 C 0.022 3.978 5 N -0.513 5.513 6 C 0.063 3.937 7 C -0.095 4.095 8 C 0.045 3.955 9 H 0.000 1.000 10 C -0.535 4.535 11 H 0.055 0.945 12 C 0.013 3.987 13 N -0.918 5.918 14 Si 0.957 3.043 15 H -0.276 1.276 16 H -0.283 1.283 17 H -0.266 1.266 18 C 0.053 3.947 19 C -0.092 4.092 20 C -0.114 4.114 21 C -0.114 4.114 22 C -0.110 4.110 23 C -0.141 4.141 24 H 0.028 0.972 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.030 0.970 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.028 0.972 32 H 0.031 0.969 33 H 0.261 0.739 34 H 0.069 0.931 35 H 0.029 0.971 36 H 0.076 0.924 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.456 4.982 -19.680 20.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.302 6.302 3 C 0.089 3.911 4 C -0.107 4.107 5 N -0.237 5.237 6 C -0.065 4.065 7 C -0.134 4.134 8 C 0.025 3.975 9 H 0.018 0.982 10 C -0.574 4.574 11 H 0.073 0.927 12 C -0.186 4.186 13 N -0.557 5.557 14 Si 0.782 3.218 15 H -0.201 1.201 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.075 4.075 19 C -0.130 4.130 20 C -0.152 4.152 21 C -0.151 4.151 22 C -0.147 4.147 23 C -0.179 4.179 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.107 0.893 27 H 0.048 0.952 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.741 4.641 -19.732 20.345 hybrid contribution -1.421 0.022 1.649 2.177 sum -3.163 4.663 -18.083 18.940 Atomic orbital electron populations 1.22898 0.81674 1.03143 0.99951 1.88001 1.19596 1.27849 1.94712 1.21502 0.94643 0.83007 0.91975 1.22931 0.96318 0.99026 0.92442 1.64697 1.53269 1.02320 1.03374 1.22759 0.97523 0.91171 0.95053 1.22149 0.98574 0.99224 0.93451 1.19457 0.94513 0.91259 0.92227 0.98229 1.21445 1.32750 1.04197 0.98971 0.92690 1.25781 0.96019 0.94884 1.01915 1.70120 1.42683 1.09778 1.33138 0.85581 0.78496 0.78608 0.79121 1.20139 1.20883 1.19027 1.23131 0.98016 0.97163 0.89155 1.21339 0.92302 1.01393 0.97962 1.21463 1.00313 0.99191 0.94214 1.21513 0.95416 1.00406 0.97808 1.21419 0.96505 1.00580 0.96232 1.22105 1.01299 0.99828 0.94671 0.95371 0.92005 0.89254 0.95168 0.89499 0.93909 0.91652 0.95286 0.95001 0.93058 0.91225 0.95226 0.90542 0.92645 0.92832 0.91839 0.91297 0.91446 0.92434 0.90612 0.91182 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.17 113.37 1.04 1.49 16 2 O -0.38 -10.68 6.80 -148.98 -1.01 -11.69 16 3 C 0.13 3.25 0.40 -10.80 0.00 3.24 16 4 C 0.02 0.64 3.90 86.30 0.34 0.98 16 5 N -0.51 -19.52 4.25 -883.03 -3.76 -23.27 16 6 C 0.06 2.56 5.06 86.45 0.44 3.00 16 7 C -0.10 -4.80 5.51 31.48 0.17 -4.63 16 8 C 0.04 2.35 2.98 -10.33 -0.03 2.32 16 9 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 10 C -0.54 -30.32 8.43 25.60 0.22 -30.10 16 11 H 0.05 3.03 7.78 -2.91 -0.02 3.00 16 12 C 0.01 0.74 5.33 84.65 0.45 1.20 16 13 N -0.92 -54.94 12.44 21.45 0.27 -54.67 16 14 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 18 C 0.05 2.28 5.98 86.65 0.52 2.80 16 19 C -0.09 -2.39 4.71 30.59 0.14 -2.24 16 20 C -0.11 -2.48 5.78 30.59 0.18 -2.31 16 21 C -0.11 -1.93 5.92 30.60 0.18 -1.74 16 22 C -0.11 -1.85 5.70 30.60 0.17 -1.67 16 23 C -0.14 -2.67 4.20 30.59 0.13 -2.55 16 24 H 0.03 0.73 5.26 -2.39 -0.01 0.72 16 25 H 0.06 1.16 5.90 -2.39 -0.01 1.15 16 26 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.03 0.92 6.32 -2.38 -0.02 0.90 16 28 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 29 H 0.04 1.64 4.82 -2.39 -0.01 1.63 16 30 H 0.07 2.70 7.67 -2.39 -0.02 2.68 16 31 H 0.03 1.53 7.84 -2.39 -0.02 1.52 16 32 H 0.03 1.72 8.04 -2.39 -0.02 1.70 16 33 H 0.26 14.80 8.31 -92.71 -0.77 14.02 16 34 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.03 1.28 7.92 -2.39 -0.02 1.26 16 36 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.05 1.79 7.44 -2.38 -0.02 1.77 16 38 H 0.05 1.32 7.68 -2.38 -0.02 1.30 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.06 1.09 7.40 -2.39 -0.02 1.07 16 43 H 0.08 1.01 8.14 -2.39 -0.02 1.00 16 44 H 0.07 1.25 6.38 -2.38 -0.02 1.23 16 45 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -62.54 327.60 2.40 -60.14 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.94 Total: 13.38 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 3.94 Total: -30.21 kcal Atomic # 7 Polarization: -74.46 SS G_CDS: -3.49 Total: -77.95 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: -1.01 Total: -11.69 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -62.54 2.40 -60.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000692808780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.802 kcal (2) G-P(sol) polarization free energy of solvation -62.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds