Wall clock time and date at job start Mon Mar 30 2020 08:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99859 * 2 1 4 4 C 1.53002 * 109.46786 * 66.04661 * 3 2 1 5 5 C 1.50703 * 109.47153 * 179.97438 * 4 3 2 6 6 H 1.08003 * 120.00033 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00330 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00241 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99896 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47192 * 90.00277 * 9 7 5 11 11 H 1.48498 * 109.47352 * 209.99968 * 9 7 5 12 12 H 1.48500 * 109.47527 * 330.00243 * 9 7 5 13 13 C 1.47329 * 111.00018 * 236.05009 * 2 1 3 14 14 C 1.52654 * 109.07585 * 57.95520 * 13 2 1 15 15 C 1.52489 * 111.02371 * 180.39449 * 14 13 2 16 16 C 1.52980 * 110.19581 * 287.04988 * 15 14 13 17 17 C 1.54548 * 107.52151 * 170.44870 * 15 14 13 18 18 C 1.51919 * 112.36541 * 52.02223 * 15 14 13 19 19 C 1.51965 * 115.42562 * 314.66488 * 18 15 14 20 20 C 1.54495 * 107.83050 * 164.37524 * 19 18 15 21 21 C 1.52833 * 111.70377 * 282.20429 * 19 18 15 22 22 C 1.52694 * 111.78222 * 46.42721 * 19 18 15 23 23 H 1.09000 * 109.47082 * 183.94832 * 1 2 3 24 24 H 1.09000 * 109.47261 * 303.95458 * 1 2 3 25 25 H 1.09000 * 109.47096 * 63.95505 * 1 2 3 26 26 H 1.08993 * 109.47172 * 186.04686 * 3 2 1 27 27 H 1.09004 * 109.47376 * 306.04893 * 3 2 1 28 28 H 1.09000 * 109.47047 * 299.99735 * 4 3 2 29 29 H 1.08999 * 109.47250 * 60.00387 * 4 3 2 30 30 H 0.97004 * 120.00300 * 180.02562 * 8 7 5 31 31 H 1.08688 * 108.69055 * 178.41901 * 13 2 1 32 32 H 1.09330 * 109.27721 * 59.64979 * 14 13 2 33 33 H 1.09337 * 109.25602 * 301.08240 * 14 13 2 34 34 H 1.08993 * 109.47189 * 178.59883 * 16 15 14 35 35 H 1.09004 * 109.47026 * 298.59868 * 16 15 14 36 36 H 1.08999 * 109.47123 * 58.59035 * 16 15 14 37 37 H 1.09004 * 109.47410 * 298.65372 * 17 15 14 38 38 H 1.09004 * 109.46982 * 58.65116 * 17 15 14 39 39 H 1.08996 * 109.47347 * 178.65064 * 17 15 14 40 40 H 1.10106 * 108.65583 * 76.94850 * 18 15 14 41 41 H 1.10099 * 108.69212 * 192.31455 * 18 15 14 42 42 H 1.08997 * 109.46781 * 59.99916 * 20 19 18 43 43 H 1.08993 * 109.46919 * 179.97438 * 20 19 18 44 44 H 1.09000 * 109.46810 * 300.00271 * 20 19 18 45 45 H 1.08992 * 109.46791 * 66.92442 * 21 19 18 46 46 H 1.09002 * 109.46811 * 186.92370 * 21 19 18 47 47 H 1.08998 * 109.46900 * 306.91928 * 21 19 18 48 48 H 1.09199 * 109.41899 * 66.24977 * 22 19 18 49 49 H 1.09239 * 109.36839 * 185.39540 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1719 3.4642 1.3187 6 1 2.7199 3.8323 0.4639 7 6 1.9669 4.2812 2.4101 8 7 2.4382 5.5090 2.4102 9 14 1.0198 3.6443 3.8888 10 1 1.9636 3.0169 4.8484 11 1 0.3182 4.7732 4.5510 12 1 0.0246 2.6364 3.4426 13 6 1.9970 -0.7681 -1.1410 14 6 1.4611 -0.1670 -2.4378 15 6 1.9738 -0.9366 -3.6503 16 6 3.4550 -0.6319 -3.8816 17 6 1.2016 -0.4244 -4.8872 18 6 1.7249 -2.4308 -3.5342 19 6 2.0683 -3.0468 -2.1882 20 6 1.3976 -4.4368 -2.1191 21 6 3.5739 -3.2565 -2.0302 22 6 1.5230 -2.2158 -1.0290 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3634 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0796 1.3445 -0.1082 27 1 1.5610 1.9274 -0.8309 28 1 0.5471 2.0844 1.4265 29 1 2.0658 1.5015 2.1492 30 1 2.2943 6.0838 3.1782 31 1 3.0826 -0.7202 -1.1206 32 1 1.7781 0.8768 -2.5098 33 1 0.3683 -0.1975 -2.4249 34 1 3.8153 -1.2065 -4.7349 35 1 3.5802 0.4323 -4.0813 36 1 4.0250 -0.9043 -2.9933 37 1 0.1373 -0.6218 -4.7585 38 1 1.3615 0.6483 -4.9967 39 1 1.5613 -0.9383 -5.7786 40 1 0.6639 -2.6290 -3.7516 41 1 2.3036 -2.9467 -4.3160 42 1 1.7742 -5.0625 -2.9282 43 1 1.6277 -4.9040 -1.1616 44 1 0.3180 -4.3246 -2.2190 45 1 4.0728 -2.2884 -1.9852 46 1 3.7693 -3.8089 -1.1111 47 1 3.9533 -3.8216 -2.8814 48 1 0.4315 -2.2422 -1.0454 49 1 1.8722 -2.6387 -0.0843 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693085032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:50:05 Heat of formation + Delta-G solvation = -30.351520 kcal Electronic energy + Delta-G solvation = -22266.734039 eV Core-core repulsion = 19420.380408 eV Total energy + Delta-G solvation = -2846.353631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.31292 -36.84326 -35.02377 -33.09517 -31.08909 -28.94218 -27.97367 -26.70736 -26.65240 -26.52854 -25.89965 -23.74840 -20.70054 -19.90863 -19.35791 -17.83499 -16.81393 -15.60522 -15.05865 -14.91836 -14.59596 -14.24974 -14.07207 -13.92233 -13.45708 -13.44114 -13.19899 -12.78205 -12.52610 -12.40156 -12.18892 -12.13702 -11.82728 -11.74522 -11.67315 -11.33280 -11.25625 -11.10411 -10.90931 -10.84859 -10.75522 -10.54367 -10.36565 -10.13828 -9.96300 -9.93977 -9.69804 -9.48941 -9.15108 -8.49100 -7.67125 -6.01053 -3.98631 3.35249 3.41890 3.47105 4.31244 4.49451 4.51499 4.64979 4.81292 4.97318 4.97530 5.10322 5.25699 5.33704 5.40816 5.48582 5.49078 5.55872 5.60872 5.62964 5.65271 5.71611 5.77724 5.78331 5.84529 5.85416 5.89496 5.93557 5.97543 6.05953 6.09386 6.14788 6.17289 6.22769 6.30912 6.33092 6.40373 6.43290 6.44369 6.57671 6.61475 6.85021 7.23374 7.39626 7.67224 7.73031 7.91063 8.57232 9.03404 9.61938 11.12430 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.004587 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.876143 B = 6102.729140 C = 6555.357025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.540 5.540 3 C 0.071 3.929 4 C -0.008 4.008 5 C -0.519 4.519 6 H 0.070 0.930 7 C 0.067 3.933 8 N -0.905 5.905 9 Si 0.881 3.119 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.087 3.913 14 C -0.141 4.141 15 C -0.053 4.053 16 C -0.144 4.144 17 C -0.146 4.146 18 C -0.090 4.090 19 C -0.057 4.057 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.098 4.098 23 H 0.059 0.941 24 H 0.070 0.930 25 H 0.024 0.976 26 H 0.063 0.937 27 H 0.027 0.973 28 H 0.015 0.985 29 H 0.019 0.981 30 H 0.262 0.738 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.054 0.946 47 H 0.050 0.950 48 H 0.061 0.939 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 -18.868 -12.771 22.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.263 5.263 3 C -0.056 4.056 4 C -0.046 4.046 5 C -0.558 4.558 6 H 0.088 0.912 7 C -0.134 4.134 8 N -0.544 5.544 9 Si 0.709 3.291 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.190 1.190 13 C -0.021 4.021 14 C -0.180 4.180 15 C -0.053 4.053 16 C -0.201 4.201 17 C -0.203 4.203 18 C -0.128 4.128 19 C -0.057 4.057 20 C -0.202 4.202 21 C -0.200 4.200 22 C -0.136 4.136 23 H 0.077 0.923 24 H 0.089 0.911 25 H 0.042 0.958 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.099 0.901 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.081 0.919 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.079 0.921 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.861 -18.931 -12.222 22.611 hybrid contribution -0.801 0.302 0.024 0.856 sum -2.662 -18.630 -12.198 22.426 Atomic orbital electron populations 1.22461 0.88830 1.00966 1.00776 1.62510 1.07320 1.15824 1.40603 1.22106 0.98896 0.85414 0.99184 1.19580 0.96468 0.95527 0.92982 1.21099 1.35343 0.95625 1.03706 0.91212 1.24990 0.95329 0.94676 0.98385 1.69918 1.46457 1.07221 1.30851 0.86751 0.80783 0.78498 0.83083 1.20256 1.21559 1.19013 1.21601 0.99550 0.92971 0.87998 1.22191 1.01013 0.99886 0.94882 1.20319 0.95573 0.94500 0.94929 1.22013 0.95302 1.01299 1.01475 1.22323 0.99694 1.01003 0.97279 1.21368 1.01176 0.94158 0.96089 1.20397 0.95629 0.94768 0.94918 1.22288 1.00136 0.96316 1.01430 1.21968 0.94973 1.01896 1.01168 1.21569 1.00362 0.94164 0.97493 0.92274 0.91085 0.95788 0.91811 0.95488 0.96656 0.96276 0.92792 0.90100 0.91636 0.91889 0.93086 0.92721 0.92010 0.93063 0.92698 0.93084 0.92635 0.92613 0.93077 0.92697 0.92997 0.91930 0.92738 0.93113 0.92082 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.58 60.06 0.52 0.80 16 2 N -0.54 -9.35 4.75 -235.06 -1.12 -10.46 16 3 C 0.07 1.46 4.35 -3.82 -0.02 1.44 16 4 C -0.01 -0.19 3.97 -27.88 -0.11 -0.30 16 5 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 6 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 7 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 8 N -0.91 -28.28 13.96 55.43 0.77 -27.51 16 9 Si 0.88 22.23 27.47 -169.99 -4.67 17.57 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 13 C 0.09 1.23 2.02 -67.79 -0.14 1.09 16 14 C -0.14 -1.85 3.15 -27.17 -0.09 -1.93 16 15 C -0.05 -0.56 0.70 -154.52 -0.11 -0.67 16 16 C -0.14 -1.52 7.97 37.15 0.30 -1.23 16 17 C -0.15 -1.46 8.07 37.97 0.31 -1.16 16 18 C -0.09 -0.89 3.43 -27.81 -0.10 -0.98 16 19 C -0.06 -0.56 0.69 -154.49 -0.11 -0.67 16 20 C -0.14 -1.27 8.10 37.94 0.31 -0.96 16 21 C -0.14 -1.38 7.97 37.07 0.30 -1.09 16 22 C -0.10 -1.18 3.59 -27.02 -0.10 -1.27 16 23 H 0.06 0.82 6.30 -51.93 -0.33 0.49 16 24 H 0.07 1.25 6.30 -51.93 -0.33 0.93 16 25 H 0.02 0.37 6.21 -51.93 -0.32 0.05 16 26 H 0.06 1.33 7.98 -51.93 -0.41 0.91 16 27 H 0.03 0.56 6.92 -51.93 -0.36 0.20 16 28 H 0.02 0.38 5.53 -51.93 -0.29 0.09 16 29 H 0.02 0.48 7.57 -51.93 -0.39 0.08 16 30 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 31 H 0.08 1.19 5.93 -52.10 -0.31 0.88 16 32 H 0.06 0.98 6.69 -51.74 -0.35 0.63 16 33 H 0.06 0.85 6.20 -51.74 -0.32 0.53 16 34 H 0.05 0.48 8.07 -51.93 -0.42 0.06 16 35 H 0.05 0.61 8.13 -51.93 -0.42 0.18 16 36 H 0.06 0.68 4.67 -51.93 -0.24 0.43 16 37 H 0.05 0.51 8.05 -51.93 -0.42 0.09 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.54 7.65 -51.30 -0.39 0.15 16 41 H 0.06 0.51 7.97 -51.30 -0.41 0.10 16 42 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.45 8.06 -51.93 -0.42 0.03 16 45 H 0.06 0.65 4.52 -51.93 -0.23 0.42 16 46 H 0.05 0.52 8.13 -51.93 -0.42 0.10 16 47 H 0.05 0.44 8.09 -51.93 -0.42 0.02 16 48 H 0.06 0.74 6.36 -51.82 -0.33 0.41 16 49 H 0.07 0.86 8.14 -51.79 -0.42 0.44 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -29.97 346.99 -8.48 -38.45 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -9.23 Total: -2.86 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 0.53 Total: -20.41 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: -0.34 Total: -37.97 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.97 -8.48 -38.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693085032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.100 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds