Wall clock time and date at job start Mon Mar 30 2020 08:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 110.99859 * 2 1 4 4 C 1.53002 * 109.46786 * 66.04661 * 3 2 1 5 5 C 1.50703 * 109.47153 * 179.97438 * 4 3 2 6 6 H 1.08003 * 120.00033 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00330 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00241 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 119.99896 * 0.02562 * 7 5 4 10 10 H 1.48505 * 109.47192 * 90.00277 * 9 7 5 11 11 H 1.48498 * 109.47352 * 209.99968 * 9 7 5 12 12 H 1.48500 * 109.47527 * 330.00243 * 9 7 5 13 13 C 1.47329 * 111.00018 * 236.05009 * 2 1 3 14 14 C 1.52654 * 109.07585 * 57.95520 * 13 2 1 15 15 C 1.52489 * 111.02371 * 180.39449 * 14 13 2 16 16 C 1.52980 * 110.19581 * 287.04988 * 15 14 13 17 17 C 1.54548 * 107.52151 * 170.44870 * 15 14 13 18 18 C 1.51919 * 112.36541 * 52.02223 * 15 14 13 19 19 C 1.51965 * 115.42562 * 314.66488 * 18 15 14 20 20 C 1.54495 * 107.83050 * 164.37524 * 19 18 15 21 21 C 1.52833 * 111.70377 * 282.20429 * 19 18 15 22 22 C 1.52694 * 111.78222 * 46.42721 * 19 18 15 23 23 H 1.09000 * 109.47082 * 183.94832 * 1 2 3 24 24 H 1.09000 * 109.47261 * 303.95458 * 1 2 3 25 25 H 1.09000 * 109.47096 * 63.95505 * 1 2 3 26 26 H 1.08993 * 109.47172 * 186.04686 * 3 2 1 27 27 H 1.09004 * 109.47376 * 306.04893 * 3 2 1 28 28 H 1.09000 * 109.47047 * 299.99735 * 4 3 2 29 29 H 1.08999 * 109.47250 * 60.00387 * 4 3 2 30 30 H 0.97004 * 120.00300 * 180.02562 * 8 7 5 31 31 H 1.08688 * 108.69055 * 178.41901 * 13 2 1 32 32 H 1.09330 * 109.27721 * 59.64979 * 14 13 2 33 33 H 1.09337 * 109.25602 * 301.08240 * 14 13 2 34 34 H 1.08993 * 109.47189 * 178.59883 * 16 15 14 35 35 H 1.09004 * 109.47026 * 298.59868 * 16 15 14 36 36 H 1.08999 * 109.47123 * 58.59035 * 16 15 14 37 37 H 1.09004 * 109.47410 * 298.65372 * 17 15 14 38 38 H 1.09004 * 109.46982 * 58.65116 * 17 15 14 39 39 H 1.08996 * 109.47347 * 178.65064 * 17 15 14 40 40 H 1.10106 * 108.65583 * 76.94850 * 18 15 14 41 41 H 1.10099 * 108.69212 * 192.31455 * 18 15 14 42 42 H 1.08997 * 109.46781 * 59.99916 * 20 19 18 43 43 H 1.08993 * 109.46919 * 179.97438 * 20 19 18 44 44 H 1.09000 * 109.46810 * 300.00271 * 20 19 18 45 45 H 1.08992 * 109.46791 * 66.92442 * 21 19 18 46 46 H 1.09002 * 109.46811 * 186.92370 * 21 19 18 47 47 H 1.08998 * 109.46900 * 306.91928 * 21 19 18 48 48 H 1.09199 * 109.41899 * 66.24977 * 22 19 18 49 49 H 1.09239 * 109.36839 * 185.39540 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0574 1.3183 5 6 2.1719 3.4642 1.3187 6 1 2.7199 3.8323 0.4639 7 6 1.9669 4.2812 2.4101 8 7 2.4382 5.5090 2.4102 9 14 1.0198 3.6443 3.8888 10 1 1.9636 3.0169 4.8484 11 1 0.3182 4.7732 4.5510 12 1 0.0246 2.6364 3.4426 13 6 1.9970 -0.7681 -1.1410 14 6 1.4611 -0.1670 -2.4378 15 6 1.9738 -0.9366 -3.6503 16 6 3.4550 -0.6319 -3.8816 17 6 1.2016 -0.4244 -4.8872 18 6 1.7249 -2.4308 -3.5342 19 6 2.0683 -3.0468 -2.1882 20 6 1.3976 -4.4368 -2.1191 21 6 3.5739 -3.2565 -2.0302 22 6 1.5230 -2.2158 -1.0290 23 1 -0.3633 -1.0252 0.0708 24 1 -0.3634 0.5740 0.8524 25 1 -0.3633 0.4512 -0.9233 26 1 3.0796 1.3445 -0.1082 27 1 1.5610 1.9274 -0.8309 28 1 0.5471 2.0844 1.4265 29 1 2.0658 1.5015 2.1492 30 1 2.2943 6.0838 3.1782 31 1 3.0826 -0.7202 -1.1206 32 1 1.7781 0.8768 -2.5098 33 1 0.3683 -0.1975 -2.4249 34 1 3.8153 -1.2065 -4.7349 35 1 3.5802 0.4323 -4.0813 36 1 4.0250 -0.9043 -2.9933 37 1 0.1373 -0.6218 -4.7585 38 1 1.3615 0.6483 -4.9967 39 1 1.5613 -0.9383 -5.7786 40 1 0.6639 -2.6290 -3.7516 41 1 2.3036 -2.9467 -4.3160 42 1 1.7742 -5.0625 -2.9282 43 1 1.6277 -4.9040 -1.1616 44 1 0.3180 -4.3246 -2.2190 45 1 4.0728 -2.2884 -1.9852 46 1 3.7693 -3.8089 -1.1111 47 1 3.9533 -3.8216 -2.8814 48 1 0.4315 -2.2422 -1.0454 49 1 1.8722 -2.6387 -0.0843 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693085032.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:50:05 Heat of formation + Delta-G solvation = -47.331281 kcal Electronic energy + Delta-G solvation = -22267.470337 eV Core-core repulsion = 19420.380408 eV Total energy + Delta-G solvation = -2847.089929 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.31509 -38.15220 -35.85925 -35.18147 -32.83586 -30.40027 -28.81461 -27.94283 -27.45864 -27.39813 -27.02906 -25.48509 -22.31842 -21.04691 -20.51486 -19.04470 -18.73117 -16.82167 -16.28598 -16.17797 -16.01335 -15.63357 -15.15140 -15.06072 -14.74554 -14.65815 -14.51196 -14.16276 -13.85627 -13.47242 -13.35185 -13.03364 -12.93970 -12.78517 -12.71450 -12.62985 -12.48423 -12.43816 -12.17670 -11.97462 -11.77061 -11.70213 -11.65483 -11.63655 -11.42819 -11.34279 -11.08440 -10.93810 -10.77356 -10.71344 -9.06896 -8.30651 -6.34662 1.35877 1.36803 1.49773 2.35802 3.04829 3.05801 3.64901 3.75436 3.85964 4.07868 4.14441 4.22565 4.28549 4.29877 4.40915 4.48624 4.54243 4.62510 4.65927 4.69436 4.75818 4.80576 4.85382 4.89932 4.92431 4.95878 4.98911 5.01959 5.06381 5.09146 5.12836 5.15053 5.17499 5.23591 5.25976 5.33039 5.35479 5.45838 5.47927 5.51368 5.59400 5.60210 5.63451 5.68778 6.16798 6.29667 6.35973 6.72850 7.30073 8.86198 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.004587 C = 0.004270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.876143 B = 6102.729140 C = 6555.357025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.086 3.914 4 C 0.000 4.000 5 C -0.532 4.532 6 H 0.030 0.970 7 C 0.008 3.992 8 N -0.951 5.951 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.249 1.249 13 C 0.089 3.911 14 C -0.134 4.134 15 C -0.050 4.050 16 C -0.143 4.143 17 C -0.143 4.143 18 C -0.088 4.088 19 C -0.054 4.054 20 C -0.140 4.140 21 C -0.143 4.143 22 C -0.091 4.091 23 H 0.085 0.915 24 H 0.054 0.946 25 H 0.027 0.973 26 H 0.053 0.947 27 H 0.017 0.983 28 H 0.019 0.981 29 H 0.018 0.982 30 H 0.267 0.733 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.053 0.947 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.178 -21.757 -13.053 25.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.270 5.270 3 C -0.042 4.042 4 C -0.038 4.038 5 C -0.571 4.571 6 H 0.048 0.952 7 C -0.189 4.189 8 N -0.591 5.591 9 Si 0.776 3.224 10 H -0.192 1.192 11 H -0.208 1.208 12 H -0.173 1.173 13 C -0.019 4.019 14 C -0.173 4.173 15 C -0.051 4.051 16 C -0.200 4.200 17 C -0.201 4.201 18 C -0.126 4.126 19 C -0.054 4.054 20 C -0.198 4.198 21 C -0.200 4.200 22 C -0.129 4.129 23 H 0.104 0.896 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.072 0.928 27 H 0.035 0.965 28 H 0.038 0.962 29 H 0.036 0.964 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.082 0.918 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.026 -21.841 -12.524 25.359 hybrid contribution -0.373 1.245 0.040 1.300 sum -3.399 -20.597 -12.484 24.323 Atomic orbital electron populations 1.22480 0.87790 1.02395 1.00198 1.62454 1.08307 1.13522 1.42685 1.21747 0.98325 0.87330 0.96777 1.19449 0.96223 0.93166 0.94925 1.21410 1.35073 0.98001 1.02601 0.95167 1.25960 0.96384 0.94736 1.01853 1.70064 1.48091 1.08787 1.32187 0.85628 0.79650 0.78387 0.78780 1.19200 1.20771 1.17271 1.21653 0.98966 0.94007 0.87266 1.22107 1.00779 0.98698 0.95686 1.20302 0.95570 0.95218 0.93972 1.22011 0.95294 1.00799 1.01934 1.22297 0.99832 1.00472 0.97470 1.21344 1.01878 0.92989 0.96368 1.20371 0.95843 0.95197 0.94039 1.22242 1.00192 0.95344 1.01992 1.21967 0.94719 1.01465 1.01836 1.21524 1.00504 0.92525 0.98327 0.89617 0.92733 0.95440 0.92840 0.96474 0.96235 0.96399 0.92429 0.91086 0.94290 0.92010 0.91329 0.93987 0.92598 0.92737 0.93818 0.91499 0.92016 0.91110 0.91860 0.92667 0.92701 0.93119 0.92745 0.91715 0.91750 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 8.58 127.69 1.09 1.69 16 2 N -0.55 -18.69 4.75 -897.59 -4.26 -22.96 16 3 C 0.09 3.63 4.35 86.30 0.38 4.00 16 4 C 0.00 0.00 3.97 29.85 0.12 0.12 16 5 C -0.53 -31.83 9.66 25.60 0.25 -31.58 16 6 H 0.03 1.98 7.99 -2.91 -0.02 1.95 16 7 C 0.01 0.45 5.47 84.65 0.46 0.91 16 8 N -0.95 -60.86 13.96 21.44 0.30 -60.56 16 9 Si 0.95 45.74 27.47 68.60 1.88 47.62 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 12 H -0.25 -11.22 6.54 99.48 0.65 -10.57 16 13 C 0.09 2.45 2.02 44.63 0.09 2.54 16 14 C -0.13 -3.46 3.15 30.31 0.10 -3.36 16 15 C -0.05 -1.00 0.70 -52.19 -0.04 -1.04 16 16 C -0.14 -2.90 7.97 71.98 0.57 -2.33 16 17 C -0.14 -2.64 8.07 72.51 0.58 -2.06 16 18 C -0.09 -1.47 3.43 29.90 0.10 -1.37 16 19 C -0.05 -0.93 0.69 -52.17 -0.04 -0.97 16 20 C -0.14 -2.00 8.10 72.49 0.59 -1.42 16 21 C -0.14 -2.45 7.97 71.93 0.57 -1.87 16 22 C -0.09 -2.00 3.59 30.40 0.11 -1.90 16 23 H 0.09 2.17 6.30 -2.39 -0.02 2.16 16 24 H 0.05 1.85 6.30 -2.39 -0.02 1.84 16 25 H 0.03 0.82 6.21 -2.39 -0.01 0.80 16 26 H 0.05 2.32 7.98 -2.39 -0.02 2.30 16 27 H 0.02 0.75 6.92 -2.39 -0.02 0.73 16 28 H 0.02 0.95 5.53 -2.39 -0.01 0.94 16 29 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 30 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 31 H 0.07 2.10 5.93 -2.55 -0.02 2.09 16 32 H 0.04 1.20 6.69 -2.21 -0.01 1.19 16 33 H 0.06 1.60 6.20 -2.21 -0.01 1.59 16 34 H 0.07 1.14 8.07 -2.39 -0.02 1.12 16 35 H 0.04 0.94 8.13 -2.39 -0.02 0.92 16 36 H 0.06 1.19 4.67 -2.39 -0.01 1.18 16 37 H 0.05 0.97 8.05 -2.39 -0.02 0.95 16 38 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.06 0.99 7.65 -1.79 -0.01 0.97 16 41 H 0.07 1.02 7.97 -1.80 -0.01 1.00 16 42 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.05 0.76 8.06 -2.39 -0.02 0.74 16 45 H 0.05 0.99 4.52 -2.39 -0.01 0.98 16 46 H 0.05 0.93 8.13 -2.39 -0.02 0.91 16 47 H 0.06 0.93 8.09 -2.39 -0.02 0.91 16 48 H 0.06 1.38 6.36 -2.28 -0.01 1.37 16 49 H 0.06 1.45 8.14 -2.26 -0.02 1.43 16 Total: -1.00 -65.46 346.99 3.70 -61.76 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 0.84 Total: 12.76 kcal Atomic # 6 Polarization: -43.57 SS G_CDS: 4.94 Total: -38.63 kcal Atomic # 7 Polarization: -79.55 SS G_CDS: -3.96 Total: -83.51 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 1.88 Total: 47.62 kcal Total: -65.46 3.70 -61.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693085032.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.427 kcal (2) G-P(sol) polarization free energy of solvation -65.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds