Wall clock time and date at job start Mon Mar 30 2020 07:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46911 * 1 3 3 C 1.46897 * 110.99737 * 2 1 4 4 C 1.53001 * 109.47051 * 66.04218 * 3 2 1 5 5 O 1.42898 * 109.46872 * 65.00371 * 4 3 2 6 6 C 1.42900 * 114.00130 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47368 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99964 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00302 * 179.97438 * 7 6 5 10 10 N 1.31526 * 119.99609 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00358 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46863 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47347 * 119.99940 * 11 9 7 14 14 H 1.48506 * 109.46878 * 240.00052 * 11 9 7 15 15 C 1.46891 * 110.99970 * 236.04556 * 2 1 3 16 16 C 1.53005 * 109.47282 * 199.92505 * 15 2 1 17 17 C 1.52305 * 115.91165 * 268.32292 * 16 15 2 18 18 C 1.51356 * 60.10149 * 253.80805 * 17 16 15 19 19 H 1.08998 * 115.85894 * 108.01203 * 18 17 16 20 20 C 1.52545 * 117.52913 * 248.65885 * 18 17 16 21 21 C 1.52876 * 110.48481 * 89.29008 * 20 18 17 22 22 C 1.53303 * 108.57845 * 306.53801 * 21 20 18 23 23 C 1.52067 * 114.63592 * 54.56064 * 16 15 2 24 24 H 1.08995 * 109.46943 * 54.61195 * 1 2 3 25 25 H 1.09003 * 109.46700 * 174.61466 * 1 2 3 26 26 H 1.09002 * 109.46866 * 294.60861 * 1 2 3 27 27 H 1.09005 * 109.47146 * 306.04849 * 3 2 1 28 28 H 1.09001 * 109.47234 * 186.04691 * 3 2 1 29 29 H 1.08990 * 109.47550 * 305.00063 * 4 3 2 30 30 H 1.09010 * 109.47095 * 184.99790 * 4 3 2 31 31 H 1.09005 * 109.47197 * 59.99735 * 6 5 4 32 32 H 1.09002 * 109.46948 * 300.00102 * 6 5 4 33 33 H 0.96999 * 120.00246 * 359.97438 * 10 9 7 34 34 H 1.08999 * 109.47287 * 319.92408 * 15 2 1 35 35 H 1.09004 * 109.47167 * 79.92380 * 15 2 1 36 36 H 1.09000 * 117.54136 * 0.84825 * 17 16 15 37 37 H 1.09004 * 117.53761 * 146.08973 * 17 16 15 38 38 H 1.08996 * 108.32899 * 329.51995 * 20 18 17 39 39 H 1.09006 * 110.04394 * 210.15145 * 20 18 17 40 40 H 1.09001 * 109.61850 * 186.81914 * 21 20 18 41 41 H 1.08997 * 109.77253 * 66.35383 * 21 20 18 42 42 H 1.09000 * 109.61926 * 314.71526 * 22 21 20 43 43 H 1.09002 * 109.61923 * 194.17489 * 22 21 20 44 44 H 1.08997 * 109.27581 * 285.90251 * 23 16 15 45 45 H 1.08999 * 109.26601 * 45.37029 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 8 2.2955 1.3976 2.3978 6 6 2.0221 1.9635 3.6812 7 6 2.7694 1.1935 4.7393 8 1 3.3906 0.3555 4.4598 9 6 2.6601 1.5587 6.0643 10 7 1.9031 2.5790 6.4048 11 14 3.5869 0.6047 7.3759 12 1 4.3614 -0.4898 6.7373 13 1 4.5155 1.5180 8.0891 14 1 2.6201 0.0269 8.3438 15 6 1.9955 -0.7659 -1.1375 16 6 3.4444 -1.1682 -0.8548 17 6 4.5121 -0.2004 -1.3477 18 6 4.2891 -1.5105 -2.0720 19 1 3.8100 -1.4384 -3.0484 20 6 5.3907 -2.5619 -1.9828 21 6 5.1724 -3.4639 -0.7680 22 6 5.0291 -2.5806 0.4767 23 6 3.6501 -1.9212 0.4503 24 1 -0.3633 0.5951 -0.8378 25 1 -0.3633 -1.0232 -0.0965 26 1 -0.3633 0.4280 0.9344 27 1 1.5611 1.9274 -0.8309 28 1 3.0798 1.3445 -0.1083 29 1 0.5532 2.0058 1.4691 30 1 1.9438 3.1012 1.2831 31 1 0.9519 1.9103 3.8813 32 1 2.3429 3.0052 3.6948 33 1 1.4221 3.0747 5.7238 34 1 1.3916 -1.6616 -1.2831 35 1 1.9579 -0.1521 -2.0375 36 1 4.1767 0.7076 -1.8487 37 1 5.4173 -0.1009 -0.7486 38 1 6.3472 -2.0487 -1.8844 39 1 5.4008 -3.1702 -2.8873 40 1 6.0272 -4.1294 -0.6479 41 1 4.2658 -4.0534 -0.9047 42 1 5.8022 -1.8123 0.4713 43 1 5.1246 -3.1932 1.3733 44 1 3.5686 -1.2243 1.2844 45 1 2.8824 -2.6888 0.5474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693823645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:34 Heat of formation + Delta-G solvation = -40.619458 kcal Electronic energy + Delta-G solvation = -21399.966655 eV Core-core repulsion = 18417.334678 eV Total energy + Delta-G solvation = -2982.631977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.09640 -37.55482 -35.96066 -33.26733 -32.85680 -30.85200 -29.44010 -27.19904 -26.34842 -24.65881 -23.88999 -22.42273 -21.73622 -20.86025 -20.36548 -18.08213 -16.91464 -16.20190 -15.76333 -15.28225 -14.85694 -14.52212 -14.24471 -13.85819 -13.69946 -13.66261 -13.51104 -13.32339 -12.88539 -12.31908 -12.17497 -11.99929 -11.72634 -11.65169 -11.60631 -11.27592 -11.08449 -10.89989 -10.74593 -10.66728 -10.61264 -10.20867 -10.08432 -10.06609 -9.60541 -9.28516 -8.74362 -8.55859 -8.15527 -8.03018 -6.40290 -4.07695 3.46277 3.50685 3.65991 3.68094 4.17939 4.49224 4.61787 4.78252 4.83868 4.88499 5.01842 5.16958 5.23850 5.27454 5.36846 5.37588 5.43291 5.52735 5.56785 5.59970 5.70834 5.76252 5.79270 5.84520 5.87802 5.92083 5.92747 6.00945 6.03949 6.15612 6.22733 6.25281 6.30041 6.32575 6.45002 6.57233 6.81537 6.84558 7.20702 7.28191 7.28677 8.00054 8.27503 8.73974 8.90073 9.62892 11.00132 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.005106 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.907396 B = 5482.641272 C = 6591.661645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.521 5.521 3 C 0.060 3.940 4 C 0.064 3.936 5 O -0.368 6.368 6 C 0.185 3.815 7 C -0.589 4.589 8 H 0.061 0.939 9 C 0.015 3.985 10 N -0.916 5.916 11 Si 1.082 2.918 12 H -0.287 1.287 13 H -0.286 1.286 14 H -0.286 1.286 15 C 0.090 3.910 16 C -0.089 4.089 17 C -0.176 4.176 18 C -0.148 4.148 19 H 0.092 0.908 20 C -0.086 4.086 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.071 4.071 24 H 0.017 0.983 25 H 0.064 0.936 26 H 0.072 0.928 27 H 0.034 0.966 28 H 0.086 0.914 29 H 0.035 0.965 30 H 0.036 0.964 31 H -0.008 1.008 32 H -0.009 1.009 33 H 0.267 0.733 34 H 0.072 0.928 35 H 0.029 0.971 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.088 0.912 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 -8.266 -18.405 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.245 5.245 3 C -0.068 4.068 4 C -0.014 4.014 5 O -0.287 6.287 6 C 0.110 3.890 7 C -0.627 4.627 8 H 0.080 0.920 9 C -0.187 4.187 10 N -0.552 5.552 11 Si 0.910 3.090 12 H -0.212 1.212 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.038 4.038 16 C -0.089 4.089 17 C -0.213 4.213 18 C -0.167 4.167 19 H 0.110 0.890 20 C -0.123 4.123 21 C -0.155 4.155 22 C -0.161 4.161 23 C -0.108 4.108 24 H 0.036 0.964 25 H 0.083 0.917 26 H 0.091 0.909 27 H 0.052 0.948 28 H 0.105 0.895 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.009 0.991 32 H 0.008 0.992 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.107 0.893 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.012 -8.734 -16.370 18.798 hybrid contribution -0.906 0.998 -2.488 2.830 sum 2.106 -7.736 -18.859 20.492 Atomic orbital electron populations 1.22432 0.87757 1.01293 1.00850 1.61739 1.06975 1.13722 1.42066 1.22232 1.01472 0.87867 0.95237 1.22291 0.96052 0.94526 0.88507 1.87978 1.69401 1.56416 1.14878 1.20257 0.94927 0.93309 0.80507 1.21945 1.31058 1.17435 0.92253 0.92042 1.25907 0.97202 0.97170 0.98461 1.70742 1.28186 1.18874 1.37423 0.83361 0.75715 0.75206 0.74702 1.21234 1.21262 1.21237 1.21707 0.93944 0.97203 0.90939 1.20931 0.91336 1.01542 0.95101 1.22843 1.01455 0.93258 1.03750 1.21858 1.01139 0.97559 0.96132 0.88984 1.20970 0.97062 0.96065 0.98204 1.21555 1.01329 0.97556 0.95084 1.21649 0.98212 0.98861 0.97387 1.20636 0.95614 0.98897 0.95633 0.96403 0.91720 0.90890 0.94777 0.89529 0.94700 0.94633 0.99062 0.99179 0.92331 0.90913 0.95287 0.89587 0.88709 0.92067 0.92048 0.92421 0.91906 0.92105 0.91834 0.89339 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.24 60.07 0.55 0.89 16 2 N -0.52 -7.94 4.29 -242.91 -1.04 -8.98 16 3 C 0.06 0.94 5.16 -3.82 -0.02 0.92 16 4 C 0.06 1.23 5.99 37.16 0.22 1.45 16 5 O -0.37 -9.11 10.27 -35.23 -0.36 -9.47 16 6 C 0.18 5.16 5.00 36.00 0.18 5.34 16 7 C -0.59 -17.83 9.43 -34.44 -0.32 -18.15 16 8 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 9 C 0.02 0.45 5.46 -17.81 -0.10 0.36 16 10 N -0.92 -28.56 13.65 55.43 0.76 -27.80 16 11 Si 1.08 26.07 29.90 -169.99 -5.08 20.98 16 12 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 15 C 0.09 1.15 4.78 -3.83 -0.02 1.13 16 16 C -0.09 -1.14 1.98 -155.81 -0.31 -1.45 16 17 C -0.18 -2.16 7.69 -27.92 -0.21 -2.37 16 18 C -0.15 -1.62 5.65 -92.16 -0.52 -2.14 16 19 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 20 C -0.09 -0.85 5.86 -27.03 -0.16 -1.01 16 21 C -0.12 -1.23 5.94 -26.64 -0.16 -1.39 16 22 C -0.12 -1.56 5.70 -26.64 -0.15 -1.71 16 23 C -0.07 -1.02 5.16 -27.27 -0.14 -1.16 16 24 H 0.02 0.21 8.07 -51.93 -0.42 -0.21 16 25 H 0.06 0.78 7.84 -51.93 -0.41 0.38 16 26 H 0.07 1.11 6.63 -51.93 -0.34 0.76 16 27 H 0.03 0.46 8.07 -51.93 -0.42 0.04 16 28 H 0.09 1.40 5.78 -51.93 -0.30 1.10 16 29 H 0.03 0.65 6.45 -51.93 -0.33 0.32 16 30 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 31 H -0.01 -0.24 8.01 -51.93 -0.42 -0.65 16 32 H -0.01 -0.27 8.01 -51.93 -0.42 -0.68 16 33 H 0.27 8.28 7.22 -40.82 -0.29 7.98 16 34 H 0.07 0.87 7.74 -51.93 -0.40 0.46 16 35 H 0.03 0.34 7.88 -51.93 -0.41 -0.06 16 36 H 0.09 1.01 7.77 -51.93 -0.40 0.61 16 37 H 0.09 1.22 7.28 -51.93 -0.38 0.85 16 38 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.66 8.05 -51.93 -0.42 0.24 16 42 H 0.06 0.79 7.12 -51.93 -0.37 0.42 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 347.24 15.07 5.23 5.23 Total: -1.00 -31.90 347.24 -9.97 -41.87 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -8.31 Total: -2.54 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -1.16 Total: -19.29 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.29 Total: -36.78 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.36 Total: -9.47 kcal Atomic # 14 Polarization: 26.07 SS G_CDS: -5.08 Total: 20.98 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.90 -9.97 -41.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693823645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.251 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds