Wall clock time and date at job start Mon Mar 30 2020 07:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46911 * 1 3 3 C 1.46897 * 110.99737 * 2 1 4 4 C 1.53001 * 109.47051 * 66.04218 * 3 2 1 5 5 O 1.42898 * 109.46872 * 65.00371 * 4 3 2 6 6 C 1.42900 * 114.00130 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47368 * 179.97438 * 6 5 4 8 8 H 1.07996 * 119.99964 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00302 * 179.97438 * 7 6 5 10 10 N 1.31526 * 119.99609 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00358 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46863 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47347 * 119.99940 * 11 9 7 14 14 H 1.48506 * 109.46878 * 240.00052 * 11 9 7 15 15 C 1.46891 * 110.99970 * 236.04556 * 2 1 3 16 16 C 1.53005 * 109.47282 * 199.92505 * 15 2 1 17 17 C 1.52305 * 115.91165 * 268.32292 * 16 15 2 18 18 C 1.51356 * 60.10149 * 253.80805 * 17 16 15 19 19 H 1.08998 * 115.85894 * 108.01203 * 18 17 16 20 20 C 1.52545 * 117.52913 * 248.65885 * 18 17 16 21 21 C 1.52876 * 110.48481 * 89.29008 * 20 18 17 22 22 C 1.53303 * 108.57845 * 306.53801 * 21 20 18 23 23 C 1.52067 * 114.63592 * 54.56064 * 16 15 2 24 24 H 1.08995 * 109.46943 * 54.61195 * 1 2 3 25 25 H 1.09003 * 109.46700 * 174.61466 * 1 2 3 26 26 H 1.09002 * 109.46866 * 294.60861 * 1 2 3 27 27 H 1.09005 * 109.47146 * 306.04849 * 3 2 1 28 28 H 1.09001 * 109.47234 * 186.04691 * 3 2 1 29 29 H 1.08990 * 109.47550 * 305.00063 * 4 3 2 30 30 H 1.09010 * 109.47095 * 184.99790 * 4 3 2 31 31 H 1.09005 * 109.47197 * 59.99735 * 6 5 4 32 32 H 1.09002 * 109.46948 * 300.00102 * 6 5 4 33 33 H 0.96999 * 120.00246 * 359.97438 * 10 9 7 34 34 H 1.08999 * 109.47287 * 319.92408 * 15 2 1 35 35 H 1.09004 * 109.47167 * 79.92380 * 15 2 1 36 36 H 1.09000 * 117.54136 * 0.84825 * 17 16 15 37 37 H 1.09004 * 117.53761 * 146.08973 * 17 16 15 38 38 H 1.08996 * 108.32899 * 329.51995 * 20 18 17 39 39 H 1.09006 * 110.04394 * 210.15145 * 20 18 17 40 40 H 1.09001 * 109.61850 * 186.81914 * 21 20 18 41 41 H 1.08997 * 109.77253 * 66.35383 * 21 20 18 42 42 H 1.09000 * 109.61926 * 314.71526 * 22 21 20 43 43 H 1.09002 * 109.61923 * 194.17489 * 22 21 20 44 44 H 1.08997 * 109.27581 * 285.90251 * 23 16 15 45 45 H 1.08999 * 109.26601 * 45.37029 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0574 1.3182 5 8 2.2955 1.3976 2.3978 6 6 2.0221 1.9635 3.6812 7 6 2.7694 1.1935 4.7393 8 1 3.3906 0.3555 4.4598 9 6 2.6601 1.5587 6.0643 10 7 1.9031 2.5790 6.4048 11 14 3.5869 0.6047 7.3759 12 1 4.3614 -0.4898 6.7373 13 1 4.5155 1.5180 8.0891 14 1 2.6201 0.0269 8.3438 15 6 1.9955 -0.7659 -1.1375 16 6 3.4444 -1.1682 -0.8548 17 6 4.5121 -0.2004 -1.3477 18 6 4.2891 -1.5105 -2.0720 19 1 3.8100 -1.4384 -3.0484 20 6 5.3907 -2.5619 -1.9828 21 6 5.1724 -3.4639 -0.7680 22 6 5.0291 -2.5806 0.4767 23 6 3.6501 -1.9212 0.4503 24 1 -0.3633 0.5951 -0.8378 25 1 -0.3633 -1.0232 -0.0965 26 1 -0.3633 0.4280 0.9344 27 1 1.5611 1.9274 -0.8309 28 1 3.0798 1.3445 -0.1083 29 1 0.5532 2.0058 1.4691 30 1 1.9438 3.1012 1.2831 31 1 0.9519 1.9103 3.8813 32 1 2.3429 3.0052 3.6948 33 1 1.4221 3.0747 5.7238 34 1 1.3916 -1.6616 -1.2831 35 1 1.9579 -0.1521 -2.0375 36 1 4.1767 0.7076 -1.8487 37 1 5.4173 -0.1009 -0.7486 38 1 6.3472 -2.0487 -1.8844 39 1 5.4008 -3.1702 -2.8873 40 1 6.0272 -4.1294 -0.6479 41 1 4.2658 -4.0534 -0.9047 42 1 5.8022 -1.8123 0.4713 43 1 5.1246 -3.1932 1.3733 44 1 3.5686 -1.2243 1.2844 45 1 2.8824 -2.6888 0.5474 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693823645.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:33 Heat of formation + Delta-G solvation = -59.687953 kcal Electronic energy + Delta-G solvation = -21400.793527 eV Core-core repulsion = 18417.334678 eV Total energy + Delta-G solvation = -2983.458849 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.08356 -39.08234 -37.51981 -35.18277 -34.17713 -31.89416 -30.89647 -28.49178 -28.22266 -25.75347 -25.10014 -24.68933 -22.73799 -22.03041 -21.40681 -19.17879 -19.06464 -17.56080 -17.34236 -16.63118 -16.14860 -15.88270 -15.65192 -15.34333 -15.02637 -14.95053 -14.69779 -14.47145 -14.25016 -14.05572 -13.49488 -13.33619 -13.06827 -13.04420 -12.75415 -12.67875 -12.57582 -12.39772 -12.04682 -11.93037 -11.80093 -11.74852 -11.59059 -11.10958 -10.84182 -10.82357 -10.57118 -10.31846 -10.26244 -9.14202 -8.82962 -6.52748 1.51023 1.61216 1.80718 2.48972 2.68131 3.03917 3.06869 3.17266 3.67546 3.83143 3.97159 4.02974 4.08956 4.16079 4.22900 4.33936 4.35585 4.40504 4.44968 4.46212 4.52337 4.55983 4.66525 4.69509 4.73076 4.83072 4.87655 4.88516 4.93562 4.97089 5.02402 5.06513 5.16147 5.25437 5.32085 5.38404 5.46208 5.55129 5.59708 5.70659 5.93443 6.14309 6.22156 6.35311 6.73718 7.28013 8.58196 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.017497 B = 0.005106 C = 0.004247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.907396 B = 5482.641272 C = 6591.661645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.550 5.550 3 C 0.070 3.930 4 C 0.055 3.945 5 O -0.384 6.384 6 C 0.197 3.803 7 C -0.615 4.615 8 H 0.050 0.950 9 C -0.029 4.029 10 N -0.930 5.930 11 Si 1.131 2.869 12 H -0.273 1.273 13 H -0.270 1.270 14 H -0.271 1.271 15 C 0.095 3.905 16 C -0.106 4.106 17 C -0.184 4.184 18 C -0.125 4.125 19 H 0.111 0.889 20 C -0.087 4.087 21 C -0.111 4.111 22 C -0.124 4.124 23 C -0.064 4.064 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.043 0.957 31 H -0.023 1.023 32 H -0.022 1.022 33 H 0.255 0.745 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.037 0.963 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.021 -9.535 -20.179 22.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.274 5.274 3 C -0.057 4.057 4 C -0.023 4.023 5 O -0.303 6.303 6 C 0.121 3.879 7 C -0.653 4.653 8 H 0.068 0.932 9 C -0.226 4.226 10 N -0.567 5.567 11 Si 0.950 3.050 12 H -0.198 1.198 13 H -0.196 1.196 14 H -0.196 1.196 15 C -0.032 4.032 16 C -0.107 4.107 17 C -0.221 4.221 18 C -0.143 4.143 19 H 0.129 0.871 20 C -0.124 4.124 21 C -0.149 4.149 22 C -0.161 4.161 23 C -0.101 4.101 24 H 0.057 0.943 25 H 0.096 0.904 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.057 0.943 30 H 0.061 0.939 31 H -0.006 1.006 32 H -0.005 1.005 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.562 -9.991 -18.184 21.052 hybrid contribution -1.122 1.423 -1.994 2.695 sum 2.440 -8.568 -20.178 22.058 Atomic orbital electron populations 1.22394 0.86915 1.02362 1.00374 1.61660 1.08000 1.13573 1.44142 1.22103 1.01314 0.88613 0.93707 1.22649 0.95974 0.95201 0.88427 1.87947 1.70329 1.57173 1.14807 1.19916 0.93535 0.92380 0.82043 1.22255 1.31674 1.17679 0.93677 0.93190 1.27575 0.96959 0.97074 1.00972 1.70870 1.29048 1.19738 1.37062 0.82787 0.75198 0.74580 0.72440 1.19808 1.19565 1.19627 1.21719 0.93663 0.97403 0.90451 1.20894 0.91987 1.02508 0.95286 1.22843 1.00687 0.94348 1.04187 1.21948 1.00127 0.96513 0.95738 0.87062 1.21034 0.96640 0.95947 0.98795 1.21515 1.02139 0.97349 0.93881 1.21635 0.96765 0.98942 0.98777 1.20469 0.96671 0.97864 0.95110 0.94250 0.90414 0.93376 0.91660 0.90225 0.94337 0.93926 1.00569 1.00458 0.93576 0.89920 0.93582 0.88895 0.90099 0.91981 0.89736 0.90931 0.91618 0.92963 0.92405 0.94380 0.92483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.24 127.69 1.18 1.89 16 2 N -0.55 -16.37 4.29 -922.43 -3.96 -20.33 16 3 C 0.07 2.16 5.16 86.30 0.45 2.60 16 4 C 0.05 2.13 5.99 71.98 0.43 2.56 16 5 O -0.38 -19.74 10.27 -148.98 -1.53 -21.27 16 6 C 0.20 11.45 5.00 71.23 0.36 11.81 16 7 C -0.62 -38.38 9.43 25.60 0.24 -38.14 16 8 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 9 C -0.03 -1.73 5.46 84.65 0.46 -1.26 16 10 N -0.93 -58.85 13.65 21.45 0.29 -58.55 16 11 Si 1.13 52.10 29.90 68.60 2.05 54.15 16 12 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 13 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 14 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 15 C 0.09 2.24 4.78 86.31 0.41 2.65 16 16 C -0.11 -2.62 1.98 -53.03 -0.10 -2.72 16 17 C -0.18 -4.29 7.69 29.83 0.23 -4.06 16 18 C -0.12 -2.39 5.65 -11.79 -0.07 -2.45 16 19 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 20 C -0.09 -1.47 5.86 30.40 0.18 -1.29 16 21 C -0.11 -2.11 5.94 30.65 0.18 -1.93 16 22 C -0.12 -3.14 5.70 30.66 0.17 -2.96 16 23 C -0.06 -1.89 5.16 30.25 0.16 -1.74 16 24 H 0.04 0.85 8.07 -2.39 -0.02 0.83 16 25 H 0.08 1.78 7.84 -2.39 -0.02 1.76 16 26 H 0.05 1.47 6.63 -2.39 -0.02 1.46 16 27 H 0.07 1.61 8.07 -2.38 -0.02 1.59 16 28 H 0.08 2.55 5.78 -2.39 -0.01 2.53 16 29 H 0.04 1.47 6.45 -2.39 -0.02 1.45 16 30 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 31 H -0.02 -1.40 8.01 -2.38 -0.02 -1.42 16 32 H -0.02 -1.32 8.01 -2.39 -0.02 -1.34 16 33 H 0.26 16.32 7.22 -92.71 -0.67 15.65 16 34 H 0.08 1.77 7.74 -2.39 -0.02 1.75 16 35 H 0.05 0.94 7.88 -2.39 -0.02 0.92 16 36 H 0.09 2.02 7.77 -2.39 -0.02 2.00 16 37 H 0.08 2.10 7.28 -2.39 -0.02 2.08 16 38 H 0.06 1.07 8.06 -2.39 -0.02 1.05 16 39 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.07 1.23 8.05 -2.39 -0.02 1.21 16 42 H 0.05 1.39 7.12 -2.39 -0.02 1.37 16 43 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -70.33 347.24 2.16 -68.18 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 1.02 Total: 12.87 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 4.28 Total: -35.05 kcal Atomic # 7 Polarization: -75.22 SS G_CDS: -3.67 Total: -78.88 kcal Atomic # 8 Polarization: -19.74 SS G_CDS: -1.53 Total: -21.27 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 2.05 Total: 54.15 kcal Total: -70.33 2.16 -68.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693823645.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.490 kcal (2) G-P(sol) polarization free energy of solvation -70.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds