Wall clock time and date at job start Mon Mar 30 2020 07:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00139 * 2 1 4 4 C 1.53006 * 109.47089 * 278.38722 * 3 2 1 5 5 O 1.42907 * 109.46720 * 58.76107 * 4 3 2 6 6 C 1.42897 * 113.99711 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47261 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99662 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00177 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00354 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99835 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47119 * 89.99829 * 11 9 7 13 13 H 1.48504 * 109.47173 * 209.99994 * 11 9 7 14 14 H 1.48497 * 109.47218 * 330.00009 * 11 9 7 15 15 C 1.46905 * 110.99558 * 123.95064 * 2 1 3 16 16 C 1.53001 * 109.46961 * 159.97570 * 15 2 1 17 17 C 1.52313 * 115.91378 * 104.95117 * 16 15 2 18 18 C 1.52067 * 115.92757 * 173.23995 * 16 15 2 19 19 H 1.08994 * 117.26042 * 0.63674 * 18 16 15 20 20 C 1.52715 * 120.52080 * 149.26564 * 18 16 15 21 21 C 1.52876 * 110.14849 * 338.52459 * 20 18 16 22 22 C 1.53299 * 108.58442 * 54.52663 * 21 20 18 23 23 C 1.51673 * 108.14594 * 285.45168 * 22 21 20 24 24 H 1.09007 * 109.46877 * 72.69609 * 1 2 3 25 25 H 1.08994 * 109.47356 * 192.69569 * 1 2 3 26 26 H 1.08998 * 109.47146 * 312.70428 * 1 2 3 27 27 H 1.09001 * 109.47596 * 158.39358 * 3 2 1 28 28 H 1.09001 * 109.47489 * 38.38716 * 3 2 1 29 29 H 1.09002 * 109.47349 * 298.76402 * 4 3 2 30 30 H 1.08997 * 109.47246 * 178.76132 * 4 3 2 31 31 H 1.08994 * 109.47639 * 300.00138 * 6 5 4 32 32 H 1.09004 * 109.47094 * 60.00284 * 6 5 4 33 33 H 0.97000 * 120.00204 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.46866 * 279.97088 * 15 2 1 35 35 H 1.08994 * 109.47319 * 39.97319 * 15 2 1 36 36 H 1.09002 * 117.53478 * 213.90532 * 17 16 15 37 37 H 1.09003 * 117.53432 * 359.15136 * 17 16 15 38 38 H 1.08997 * 109.36158 * 98.73149 * 20 18 16 39 39 H 1.09001 * 109.35467 * 218.32287 * 20 18 16 40 40 H 1.09011 * 109.61817 * 174.25511 * 21 20 18 41 41 H 1.09001 * 109.62289 * 294.61301 * 21 20 18 42 42 H 1.08993 * 109.61674 * 45.28559 * 22 21 20 43 43 H 1.08998 * 109.61846 * 165.64458 * 22 21 20 44 44 H 1.09002 * 109.71669 * 294.54969 * 23 22 21 45 45 H 1.08997 * 108.14612 * 175.48676 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9818 1.9229 -1.4271 5 8 0.6457 1.9002 -1.9337 6 6 0.5214 2.3979 -3.2674 7 6 -0.9212 2.3273 -3.6975 8 1 -1.6684 1.9413 -3.0199 9 6 -1.2872 2.7554 -4.9560 10 7 -0.3773 3.2250 -5.7813 11 14 -3.0755 2.6685 -5.4888 12 1 -3.7612 3.9357 -5.1294 13 1 -3.1449 2.4676 -6.9585 14 1 -3.7420 1.5330 -4.8020 15 6 1.9953 -0.7660 1.1377 16 6 3.4434 -1.1704 0.8540 17 6 4.5126 -0.3865 1.6038 18 6 4.1859 -1.8338 2.0034 19 1 3.6367 -1.9820 2.9331 20 6 5.2762 -2.8671 1.7287 21 6 5.0977 -3.4626 0.3320 22 6 5.0540 -2.3169 -0.6856 23 6 3.7046 -1.6341 -0.5706 24 1 -0.3633 0.3057 -0.9812 25 1 -0.3634 -1.0025 0.2258 26 1 -0.3633 0.6970 0.7552 27 1 3.0177 1.3682 0.3784 28 1 1.3737 1.9993 0.6381 29 1 2.6210 1.3079 -2.0605 30 1 2.3518 2.9482 -1.4240 31 1 0.8609 3.4331 -3.3021 32 1 1.1304 1.7931 -3.9393 33 1 -0.6348 3.5265 -6.6666 34 1 1.9594 -0.1514 2.0372 35 1 1.3903 -1.6606 1.2845 36 1 5.4576 -0.2062 1.0914 37 1 4.1795 0.4080 2.2717 38 1 6.2530 -2.3881 1.7949 39 1 5.2152 -3.6628 2.4711 40 1 5.9357 -4.1218 0.1053 41 1 4.1664 -4.0275 0.2913 42 1 5.8502 -1.6048 -0.4693 43 1 5.1833 -2.7159 -1.6917 44 1 2.9166 -2.3231 -0.8747 45 1 3.7032 -0.7707 -1.2359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693823647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:37 Heat of formation + Delta-G solvation = -38.124498 kcal Electronic energy + Delta-G solvation = -21146.480507 eV Core-core repulsion = 18163.956720 eV Total energy + Delta-G solvation = -2982.523787 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.11890 -37.43505 -35.76593 -33.31216 -32.64151 -30.89811 -29.53211 -27.02417 -26.84967 -24.67108 -23.63050 -22.20020 -21.83270 -21.10248 -20.38744 -18.13539 -16.38382 -16.17092 -15.72284 -14.96012 -14.82696 -14.62895 -14.32837 -14.20636 -13.90318 -13.68011 -13.39737 -13.31150 -12.72148 -12.32461 -12.22285 -11.82758 -11.71434 -11.60383 -11.33682 -11.15576 -11.07513 -10.92071 -10.80208 -10.77613 -10.61880 -10.42981 -10.29017 -9.94969 -9.64744 -9.40247 -9.03200 -8.74279 -8.08745 -7.92311 -6.06947 -4.08242 3.32172 3.37237 3.42391 3.62117 4.19402 4.38505 4.57375 4.71560 4.76083 4.91792 5.02504 5.03714 5.17814 5.21670 5.29583 5.40936 5.47377 5.52748 5.56276 5.66224 5.71099 5.74393 5.79539 5.83811 5.91891 5.98141 6.00317 6.10225 6.14432 6.16352 6.20126 6.23199 6.31889 6.39049 6.45248 6.60642 6.86312 7.19352 7.41063 7.48693 7.51542 7.83242 8.21474 8.66327 9.05949 9.56520 11.04645 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031587 B = 0.003680 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.230358 B = 7607.475704 C = 7798.961661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.526 5.526 3 C 0.061 3.939 4 C 0.071 3.929 5 O -0.389 6.389 6 C 0.195 3.805 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.056 3.944 10 N -0.899 5.899 11 Si 0.906 3.094 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.272 1.272 15 C 0.084 3.916 16 C -0.089 4.089 17 C -0.182 4.182 18 C -0.148 4.148 19 H 0.096 0.904 20 C -0.086 4.086 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.066 4.066 24 H 0.102 0.898 25 H 0.051 0.949 26 H 0.018 0.982 27 H 0.076 0.924 28 H 0.037 0.963 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.001 0.999 32 H 0.004 0.996 33 H 0.263 0.737 34 H 0.030 0.970 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.937 -10.562 15.128 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.250 5.250 3 C -0.067 4.067 4 C -0.007 4.007 5 O -0.309 6.309 6 C 0.121 3.879 7 C -0.550 4.550 8 H 0.083 0.917 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.733 3.267 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.196 1.196 15 C -0.044 4.044 16 C -0.090 4.090 17 C -0.219 4.219 18 C -0.167 4.167 19 H 0.115 0.885 20 C -0.123 4.123 21 C -0.157 4.157 22 C -0.162 4.162 23 C -0.104 4.104 24 H 0.120 0.880 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.095 0.905 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.019 0.981 32 H 0.022 0.978 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.090 0.910 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.937 -10.777 14.615 21.198 hybrid contribution -0.883 0.661 0.278 1.138 sum 10.053 -10.115 14.893 20.620 Atomic orbital electron populations 1.22596 0.86099 0.99374 1.03961 1.61844 1.08648 1.13365 1.41097 1.22232 0.99354 0.88475 0.96645 1.22244 0.87382 0.97451 0.93672 1.87831 1.24218 1.85517 1.33330 1.20152 0.97401 0.92754 0.77619 1.21051 0.92841 1.41908 0.99161 0.91682 1.24942 0.98188 0.95232 0.96167 1.69964 1.33277 1.42732 1.07849 0.86371 0.84176 0.78530 0.77601 1.20574 1.21128 1.19641 1.21792 0.93406 0.97466 0.91716 1.21034 0.92447 1.01868 0.93602 1.23270 1.00603 0.94233 1.03824 1.22261 1.01273 0.94070 0.99111 0.88547 1.21015 0.97094 0.97135 0.97094 1.21579 1.01622 0.97690 0.94801 1.21471 0.98237 0.97574 0.98897 1.20355 0.95973 1.00624 0.93414 0.87973 0.93060 0.96364 0.90521 0.94473 0.93991 0.94737 0.98104 0.97774 0.92736 0.95171 0.90965 0.88870 0.89401 0.91983 0.92050 0.92454 0.91715 0.92264 0.91839 0.91229 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.23 60.06 0.55 1.00 16 2 N -0.53 -8.07 3.85 -242.91 -0.94 -9.01 16 3 C 0.06 0.95 5.43 -3.82 -0.02 0.93 16 4 C 0.07 1.35 6.32 37.16 0.23 1.58 16 5 O -0.39 -9.27 7.67 -35.23 -0.27 -9.54 16 6 C 0.20 5.39 5.69 36.01 0.20 5.59 16 7 C -0.51 -15.05 9.43 -34.44 -0.32 -15.38 16 8 H 0.06 1.89 7.81 -52.48 -0.41 1.48 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 11 Si 0.91 21.95 29.54 -169.99 -5.02 16.93 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 C 0.08 1.05 4.87 -3.82 -0.02 1.03 16 16 C -0.09 -1.00 1.83 -155.81 -0.29 -1.29 16 17 C -0.18 -1.86 8.25 -26.74 -0.22 -2.09 16 18 C -0.15 -1.44 5.83 -90.90 -0.53 -1.97 16 19 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 20 C -0.09 -0.74 5.83 -26.94 -0.16 -0.90 16 21 C -0.12 -1.08 5.91 -26.64 -0.16 -1.24 16 22 C -0.12 -1.27 5.70 -27.25 -0.16 -1.43 16 23 C -0.07 -0.81 4.72 -27.88 -0.13 -0.94 16 24 H 0.10 2.05 6.10 -51.92 -0.32 1.73 16 25 H 0.05 0.73 7.66 -51.93 -0.40 0.33 16 26 H 0.02 0.28 7.75 -51.93 -0.40 -0.12 16 27 H 0.08 1.04 6.42 -51.93 -0.33 0.71 16 28 H 0.04 0.59 7.66 -51.93 -0.40 0.20 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 32 H 0.00 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.03 0.36 7.68 -51.93 -0.40 -0.03 16 35 H 0.07 0.87 7.63 -51.93 -0.40 0.48 16 36 H 0.09 0.94 7.26 -51.93 -0.38 0.56 16 37 H 0.09 0.88 7.99 -51.93 -0.42 0.46 16 38 H 0.06 0.52 8.06 -51.93 -0.42 0.10 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.06 0.62 8.03 -51.93 -0.42 0.20 16 42 H 0.06 0.60 7.11 -51.93 -0.37 0.23 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 LS Contribution 346.99 15.07 5.23 5.23 Total: -1.00 -30.10 346.99 -9.77 -39.87 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -8.41 Total: -3.51 kcal Atomic # 6 Polarization: -12.47 SS G_CDS: -1.10 Total: -13.57 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.20 Total: -35.41 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -0.27 Total: -9.54 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.10 -9.77 -39.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693823647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.747 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds