Wall clock time and date at job start Mon Mar 30 2020 07:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46896 * 111.00139 * 2 1 4 4 C 1.53006 * 109.47089 * 278.38722 * 3 2 1 5 5 O 1.42907 * 109.46720 * 58.76107 * 4 3 2 6 6 C 1.42897 * 113.99711 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47261 * 179.97438 * 6 5 4 8 8 H 1.08005 * 119.99662 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00177 * 180.02562 * 7 6 5 10 10 N 1.31514 * 120.00354 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99835 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47119 * 89.99829 * 11 9 7 13 13 H 1.48504 * 109.47173 * 209.99994 * 11 9 7 14 14 H 1.48497 * 109.47218 * 330.00009 * 11 9 7 15 15 C 1.46905 * 110.99558 * 123.95064 * 2 1 3 16 16 C 1.53001 * 109.46961 * 159.97570 * 15 2 1 17 17 C 1.52313 * 115.91378 * 104.95117 * 16 15 2 18 18 C 1.52067 * 115.92757 * 173.23995 * 16 15 2 19 19 H 1.08994 * 117.26042 * 0.63674 * 18 16 15 20 20 C 1.52715 * 120.52080 * 149.26564 * 18 16 15 21 21 C 1.52876 * 110.14849 * 338.52459 * 20 18 16 22 22 C 1.53299 * 108.58442 * 54.52663 * 21 20 18 23 23 C 1.51673 * 108.14594 * 285.45168 * 22 21 20 24 24 H 1.09007 * 109.46877 * 72.69609 * 1 2 3 25 25 H 1.08994 * 109.47356 * 192.69569 * 1 2 3 26 26 H 1.08998 * 109.47146 * 312.70428 * 1 2 3 27 27 H 1.09001 * 109.47596 * 158.39358 * 3 2 1 28 28 H 1.09001 * 109.47489 * 38.38716 * 3 2 1 29 29 H 1.09002 * 109.47349 * 298.76402 * 4 3 2 30 30 H 1.08997 * 109.47246 * 178.76132 * 4 3 2 31 31 H 1.08994 * 109.47639 * 300.00138 * 6 5 4 32 32 H 1.09004 * 109.47094 * 60.00284 * 6 5 4 33 33 H 0.97000 * 120.00204 * 180.02562 * 10 9 7 34 34 H 1.09001 * 109.46866 * 279.97088 * 15 2 1 35 35 H 1.08994 * 109.47319 * 39.97319 * 15 2 1 36 36 H 1.09002 * 117.53478 * 213.90532 * 17 16 15 37 37 H 1.09003 * 117.53432 * 359.15136 * 17 16 15 38 38 H 1.08997 * 109.36158 * 98.73149 * 20 18 16 39 39 H 1.09001 * 109.35467 * 218.32287 * 20 18 16 40 40 H 1.09011 * 109.61817 * 174.25511 * 21 20 18 41 41 H 1.09001 * 109.62289 * 294.61301 * 21 20 18 42 42 H 1.08993 * 109.61674 * 45.28559 * 22 21 20 43 43 H 1.08998 * 109.61846 * 165.64458 * 22 21 20 44 44 H 1.09002 * 109.71669 * 294.54969 * 23 22 21 45 45 H 1.08997 * 108.14612 * 175.48676 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9818 1.9229 -1.4271 5 8 0.6457 1.9002 -1.9337 6 6 0.5214 2.3979 -3.2674 7 6 -0.9212 2.3273 -3.6975 8 1 -1.6684 1.9413 -3.0199 9 6 -1.2872 2.7554 -4.9560 10 7 -0.3773 3.2250 -5.7813 11 14 -3.0755 2.6685 -5.4888 12 1 -3.7612 3.9357 -5.1294 13 1 -3.1449 2.4676 -6.9585 14 1 -3.7420 1.5330 -4.8020 15 6 1.9953 -0.7660 1.1377 16 6 3.4434 -1.1704 0.8540 17 6 4.5126 -0.3865 1.6038 18 6 4.1859 -1.8338 2.0034 19 1 3.6367 -1.9820 2.9331 20 6 5.2762 -2.8671 1.7287 21 6 5.0977 -3.4626 0.3320 22 6 5.0540 -2.3169 -0.6856 23 6 3.7046 -1.6341 -0.5706 24 1 -0.3633 0.3057 -0.9812 25 1 -0.3634 -1.0025 0.2258 26 1 -0.3633 0.6970 0.7552 27 1 3.0177 1.3682 0.3784 28 1 1.3737 1.9993 0.6381 29 1 2.6210 1.3079 -2.0605 30 1 2.3518 2.9482 -1.4240 31 1 0.8609 3.4331 -3.3021 32 1 1.1304 1.7931 -3.9393 33 1 -0.6348 3.5265 -6.6666 34 1 1.9594 -0.1514 2.0372 35 1 1.3903 -1.6606 1.2845 36 1 5.4576 -0.2062 1.0914 37 1 4.1795 0.4080 2.2717 38 1 6.2530 -2.3881 1.7949 39 1 5.2152 -3.6628 2.4711 40 1 5.9357 -4.1218 0.1053 41 1 4.1664 -4.0275 0.2913 42 1 5.8502 -1.6048 -0.4693 43 1 5.1833 -2.7159 -1.6917 44 1 2.9166 -2.3231 -0.8747 45 1 3.7032 -0.7707 -1.2359 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693823647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:37 Heat of formation + Delta-G solvation = -54.714116 kcal Electronic energy + Delta-G solvation = -21147.199887 eV Core-core repulsion = 18163.956720 eV Total energy + Delta-G solvation = -2983.243167 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.00400 -38.96423 -37.30606 -34.89318 -34.12048 -31.78705 -31.06962 -28.97362 -28.08494 -25.54554 -25.01083 -24.32544 -22.73264 -22.20166 -21.39810 -18.98622 -18.61208 -17.48684 -17.27722 -16.51345 -16.32614 -15.96391 -15.72708 -15.20321 -14.97621 -14.86802 -14.67659 -14.40357 -14.18285 -13.64095 -13.43759 -13.22442 -13.00651 -12.97495 -12.79221 -12.65275 -12.55961 -12.30546 -12.22844 -12.02696 -11.76479 -11.73518 -11.55440 -11.22315 -11.09126 -10.83438 -10.49612 -10.27105 -10.15036 -9.15253 -8.30448 -6.42441 1.39884 1.42860 1.54855 2.35453 2.73828 3.03370 3.10533 3.28506 3.73258 3.88908 3.93642 4.03664 4.13866 4.23956 4.31180 4.38238 4.41040 4.52963 4.57153 4.60217 4.62516 4.71498 4.79553 4.82647 4.85037 4.88615 4.89845 4.95624 4.99751 5.09572 5.16335 5.21358 5.30443 5.35150 5.40970 5.42748 5.48101 5.56715 5.57839 5.59368 5.98879 6.16069 6.30471 6.57689 6.86348 7.29580 8.82078 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.031587 B = 0.003680 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.230358 B = 7607.475704 C = 7798.961661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.540 5.540 3 C 0.073 3.927 4 C 0.062 3.938 5 O -0.394 6.394 6 C 0.210 3.790 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.005 3.995 10 N -0.932 5.932 11 Si 0.982 3.018 12 H -0.268 1.268 13 H -0.275 1.275 14 H -0.264 1.264 15 C 0.089 3.911 16 C -0.105 4.105 17 C -0.180 4.180 18 C -0.135 4.135 19 H 0.107 0.893 20 C -0.086 4.086 21 C -0.116 4.116 22 C -0.122 4.122 23 C -0.061 4.061 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.022 0.978 27 H 0.102 0.898 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.041 0.959 31 H -0.019 1.019 32 H -0.020 1.020 33 H 0.270 0.730 34 H 0.041 0.959 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.923 -11.450 16.690 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.264 5.264 3 C -0.055 4.055 4 C -0.015 4.015 5 O -0.313 6.313 6 C 0.135 3.865 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.193 4.193 10 N -0.572 5.572 11 Si 0.805 3.195 12 H -0.193 1.193 13 H -0.200 1.200 14 H -0.188 1.188 15 C -0.039 4.039 16 C -0.105 4.105 17 C -0.217 4.217 18 C -0.153 4.153 19 H 0.125 0.875 20 C -0.123 4.123 21 C -0.154 4.154 22 C -0.160 4.160 23 C -0.099 4.099 24 H 0.079 0.921 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.120 0.880 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.059 0.941 31 H -0.001 1.001 32 H -0.002 1.002 33 H 0.079 0.921 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.943 -11.672 16.200 22.770 hybrid contribution -0.787 0.918 -0.190 1.224 sum 10.156 -10.755 16.010 21.798 Atomic orbital electron populations 1.22420 0.86909 1.00481 1.01560 1.61752 1.08078 1.13336 1.43217 1.22122 1.00846 0.88642 0.93869 1.22558 0.85132 0.98166 0.95681 1.87841 1.27111 1.85161 1.31235 1.19759 0.96506 0.91098 0.79135 1.21371 0.93531 1.43060 1.00045 0.91931 1.25967 1.03482 0.94089 0.95807 1.70080 1.35825 1.42888 1.08378 0.85195 0.77709 0.79106 0.77465 1.19328 1.20041 1.18780 1.21811 0.94065 0.97217 0.90782 1.20939 0.92158 1.03851 0.93584 1.23321 1.00017 0.94918 1.03400 1.22350 1.00716 0.93969 0.98292 0.87517 1.21056 0.96957 0.97292 0.96997 1.21554 1.01910 0.97212 0.94712 1.21445 0.97048 0.98079 0.99415 1.20247 0.96661 0.99266 0.93722 0.92146 0.91135 0.95975 0.88020 0.94431 0.94563 0.94061 1.00136 1.00247 0.92142 0.94074 0.90502 0.88718 0.88798 0.91296 0.90580 0.91107 0.92318 0.91885 0.92103 0.92903 0.93690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.12 9.23 127.69 1.18 2.30 16 2 N -0.54 -16.42 3.85 -922.45 -3.55 -19.98 16 3 C 0.07 2.26 5.43 86.31 0.47 2.72 16 4 C 0.06 2.43 6.32 71.98 0.45 2.89 16 5 O -0.39 -19.50 7.67 -148.98 -1.14 -20.65 16 6 C 0.21 12.14 5.69 71.24 0.41 12.55 16 7 C -0.54 -32.79 9.43 25.60 0.24 -32.55 16 8 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 9 C 0.00 0.28 5.46 84.65 0.46 0.74 16 10 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 11 Si 0.98 45.01 29.54 68.60 2.03 47.03 16 12 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 13 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 14 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 15 C 0.09 2.07 4.87 86.30 0.42 2.49 16 16 C -0.10 -2.21 1.83 -53.02 -0.10 -2.31 16 17 C -0.18 -3.25 8.25 30.59 0.25 -2.99 16 18 C -0.13 -2.24 5.83 -10.98 -0.06 -2.31 16 19 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 20 C -0.09 -1.23 5.83 30.46 0.18 -1.05 16 21 C -0.12 -1.88 5.91 30.65 0.18 -1.70 16 22 C -0.12 -2.40 5.70 30.26 0.17 -2.23 16 23 C -0.06 -1.49 4.72 29.85 0.14 -1.35 16 24 H 0.06 2.50 6.10 -2.38 -0.01 2.49 16 25 H 0.07 1.97 7.66 -2.39 -0.02 1.95 16 26 H 0.02 0.68 7.75 -2.39 -0.02 0.67 16 27 H 0.10 2.62 6.42 -2.39 -0.02 2.60 16 28 H 0.04 1.16 7.66 -2.39 -0.02 1.15 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 32 H -0.02 -1.24 8.14 -2.38 -0.02 -1.26 16 33 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 34 H 0.04 0.89 7.68 -2.39 -0.02 0.87 16 35 H 0.08 1.72 7.63 -2.39 -0.02 1.70 16 36 H 0.09 1.70 7.26 -2.39 -0.02 1.68 16 37 H 0.09 1.60 7.99 -2.39 -0.02 1.58 16 38 H 0.07 0.93 8.06 -2.39 -0.02 0.91 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.06 1.03 8.03 -2.39 -0.02 1.01 16 42 H 0.06 1.19 7.11 -2.39 -0.02 1.17 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.04 1.31 8.08 -2.39 -0.02 1.29 16 Total: -1.00 -65.70 346.99 2.93 -62.76 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 0.92 Total: 10.47 kcal Atomic # 6 Polarization: -27.20 SS G_CDS: 4.39 Total: -22.80 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -3.27 Total: -76.82 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -1.14 Total: -20.65 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.70 2.93 -62.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693823647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.051 kcal (2) G-P(sol) polarization free energy of solvation -65.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds