Wall clock time and date at job start Mon Mar 30 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47035 * 2 1 4 4 C 1.53006 * 109.46892 * 119.99606 * 2 1 3 5 5 O 1.42900 * 109.47112 * 295.37239 * 4 2 1 6 6 C 1.42900 * 113.99631 * 182.46886 * 5 4 2 7 7 C 1.52998 * 109.47066 * 178.29420 * 6 5 4 8 8 C 1.50708 * 115.55040 * 280.52543 * 7 6 5 9 9 H 1.07997 * 120.00395 * 144.26188 * 8 7 6 10 10 C 1.37882 * 119.99633 * 324.26304 * 8 7 6 11 11 N 1.31515 * 119.99945 * 337.40305 * 10 8 7 12 12 Si 1.86798 * 120.00037 * 157.40709 * 10 8 7 13 13 H 1.48501 * 109.46793 * 59.99608 * 12 10 8 14 14 H 1.48500 * 109.47061 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46973 * 300.00225 * 12 10 8 16 16 C 1.53000 * 117.50073 * 134.81575 * 7 6 5 17 17 C 1.52997 * 117.49988 * 66.19216 * 7 6 5 18 18 C 1.52993 * 109.47191 * 239.99372 * 2 1 3 19 19 H 1.09005 * 109.45764 * 300.03205 * 18 2 1 20 20 C 1.53050 * 109.46041 * 60.00207 * 18 2 1 21 21 C 1.53116 * 109.30718 * 179.21324 * 20 18 2 22 22 C 1.53112 * 109.16425 * 302.32582 * 21 20 18 23 23 C 1.53032 * 109.27985 * 57.65610 * 22 21 20 24 24 N 1.46841 * 109.52413 * 300.82138 * 23 22 21 25 25 H 1.08997 * 109.47146 * 65.08300 * 1 2 3 26 26 H 1.08994 * 109.47258 * 185.08645 * 1 2 3 27 27 H 1.09003 * 109.47154 * 305.08561 * 1 2 3 28 28 H 1.09002 * 109.47052 * 55.37195 * 4 2 1 29 29 H 1.09002 * 109.47022 * 175.37170 * 4 2 1 30 30 H 1.08998 * 109.47228 * 298.29485 * 6 5 4 31 31 H 1.09007 * 109.47324 * 58.29680 * 6 5 4 32 32 H 0.97001 * 119.99675 * 185.19888 * 11 10 8 33 33 H 1.08997 * 117.49943 * 0.02562 * 16 7 6 34 34 H 1.09005 * 117.49555 * 145.02000 * 16 7 6 35 35 H 1.09007 * 117.50087 * 214.97991 * 17 7 6 36 36 H 1.08993 * 117.49847 * 0.02562 * 17 7 6 37 37 H 1.08996 * 109.49986 * 59.25032 * 20 18 2 38 38 H 1.08996 * 109.49975 * 299.17323 * 20 18 2 39 39 H 1.08996 * 109.52396 * 62.23604 * 21 20 18 40 40 H 1.09006 * 109.52009 * 182.42282 * 21 20 18 41 41 H 1.09004 * 109.50672 * 177.59885 * 22 21 20 42 42 H 1.09004 * 109.50399 * 297.67976 * 22 21 20 43 43 H 1.09001 * 109.46248 * 60.83655 * 23 22 21 44 44 H 1.09003 * 109.46551 * 180.81706 * 23 22 21 45 45 H 1.00899 * 111.00639 * 297.64100 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 8 1.6544 0.0124 2.4135 6 6 2.1310 -0.5488 3.6383 7 6 1.6970 0.3368 4.8080 8 6 2.5288 1.5736 5.0305 9 1 2.0598 2.4869 5.3655 10 6 3.8889 1.5392 4.8063 11 7 4.5316 0.3922 4.8375 12 14 4.8185 3.1216 4.4584 13 1 4.6679 4.0474 5.6097 14 1 6.2573 2.8158 4.2545 15 1 4.2693 3.7596 3.2351 16 6 1.1178 -0.3570 6.0425 17 6 0.1991 0.4300 5.1056 18 6 2.0400 -0.7214 -1.2491 19 1 1.6761 -1.7488 -1.2491 20 6 1.5298 0.0002 -2.4987 21 6 2.0582 -0.7129 -3.7463 22 6 3.5883 -0.7428 -3.6980 23 6 4.0397 -1.4430 -2.4143 24 7 3.5093 -0.7226 -1.2498 25 1 -0.3633 0.4329 -0.9320 26 1 -0.3633 -1.0236 0.0911 27 1 -0.3633 0.5907 0.8410 28 1 1.6105 -1.7221 1.2918 29 1 3.1268 -0.7936 1.2089 30 1 1.7158 -1.5485 3.7658 31 1 3.2192 -0.6080 3.6117 32 1 5.4980 0.3754 4.7550 33 1 1.0463 -1.4445 6.0215 34 1 1.3385 0.0809 7.0159 35 1 -0.1846 1.3857 5.4628 36 1 -0.4770 -0.1400 4.4685 37 1 1.8818 1.0317 -2.4924 38 1 0.4399 -0.0123 -2.5065 39 1 1.6746 -1.7328 -3.7729 40 1 1.7324 -0.1768 -4.6377 41 1 3.9692 -1.2867 -4.5624 42 1 3.9728 0.2771 -3.7113 43 1 3.6664 -2.4671 -2.4087 44 1 5.1287 -1.4532 -2.3697 45 1 3.8715 0.2183 -1.2108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697241812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:42 Heat of formation + Delta-G solvation = -40.093773 kcal Electronic energy + Delta-G solvation = -21331.608349 eV Core-core repulsion = 18348.999168 eV Total energy + Delta-G solvation = -2982.609182 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.35050 -37.36038 -35.72093 -33.77535 -32.10740 -31.84219 -29.42540 -26.56889 -25.58389 -24.64771 -23.54318 -22.71202 -21.01959 -20.46980 -19.91609 -18.95459 -16.34673 -15.93917 -15.36461 -15.13035 -14.79503 -14.65270 -14.35733 -14.09875 -14.01849 -13.56433 -13.27828 -12.77683 -12.60671 -12.14204 -12.09351 -11.70167 -11.58935 -11.34418 -11.20198 -11.09042 -10.90621 -10.71484 -10.67870 -10.44513 -10.38139 -10.32174 -10.16796 -10.00269 -9.22756 -9.12123 -8.58405 -8.40647 -8.25285 -7.84759 -6.02720 -3.94916 3.34429 3.39867 3.45933 4.20458 4.39073 4.44768 4.65465 4.82747 4.85099 5.00563 5.12355 5.21750 5.29266 5.34623 5.48060 5.59831 5.62193 5.68194 5.75171 5.81307 5.86997 5.88057 5.91316 6.04650 6.10676 6.14950 6.22759 6.34718 6.47077 6.50749 6.59157 6.63371 6.68631 6.82235 6.94390 7.00996 7.10866 7.19261 7.41804 7.43979 7.64450 8.02964 8.49998 8.53978 8.95685 9.58920 11.01265 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.005121 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.754939 B = 5466.482501 C = 6272.353346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 H 0.075 0.925 4 C 0.076 3.924 5 O -0.382 6.382 6 C 0.093 3.907 7 C 0.058 3.942 8 C -0.488 4.488 9 H 0.060 0.940 10 C 0.076 3.924 11 N -0.874 5.874 12 Si 0.887 3.113 13 H -0.278 1.278 14 H -0.288 1.288 15 H -0.274 1.274 16 C -0.200 4.200 17 C -0.201 4.201 18 C 0.096 3.904 19 H 0.079 0.921 20 C -0.154 4.154 21 C -0.119 4.119 22 C -0.159 4.159 23 C 0.058 3.942 24 N -0.680 5.680 25 H 0.049 0.951 26 H 0.049 0.951 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.056 0.944 30 H 0.006 0.994 31 H 0.097 0.903 32 H 0.263 0.737 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.342 0.658 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.228 -3.705 -15.905 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.099 4.099 3 H 0.093 0.907 4 C -0.002 4.002 5 O -0.302 6.302 6 C 0.017 3.983 7 C 0.058 3.942 8 C -0.525 4.525 9 H 0.079 0.921 10 C -0.127 4.127 11 N -0.510 5.510 12 Si 0.714 3.286 13 H -0.203 1.203 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.238 4.238 17 C -0.239 4.239 18 C -0.014 4.014 19 H 0.097 0.903 20 C -0.193 4.193 21 C -0.156 4.156 22 C -0.198 4.198 23 C -0.072 4.072 24 N -0.308 5.308 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.046 0.954 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.114 0.886 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.083 -4.183 -15.556 16.401 hybrid contribution 0.432 1.133 -0.883 1.500 sum -2.652 -3.050 -16.439 16.928 Atomic orbital electron populations 1.21797 0.94774 1.01717 1.01638 1.21081 0.95956 1.00104 0.92808 0.90664 1.22211 0.99092 0.93255 0.85603 1.87833 1.76286 1.52296 1.13735 1.22288 1.01729 0.91964 0.82270 1.18804 0.89451 0.95693 0.90300 1.20412 0.91763 0.94889 1.45406 0.92143 1.24907 0.97444 0.96034 0.94278 1.69896 1.08153 1.25188 1.47805 0.86741 0.78326 0.84174 0.79329 1.20348 1.21339 1.19944 1.22974 1.07725 0.96224 0.96853 1.22749 0.95835 1.00571 1.04712 1.21571 0.87335 0.99527 0.92983 0.90308 1.22337 1.01638 0.99831 0.95462 1.21552 0.95492 1.00743 0.97842 1.22284 0.96382 1.01369 0.99798 1.22000 0.99759 0.98016 0.87396 1.60648 1.07114 1.22090 1.40972 0.93217 0.93212 0.91330 0.95443 0.92623 0.97618 0.88566 0.92714 0.91904 0.90265 0.90839 0.91385 0.91914 0.90956 0.92022 0.92276 0.91798 0.92090 0.91119 0.90811 0.83938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 8.82 37.16 0.33 -1.65 16 2 C -0.08 -1.22 2.35 -90.62 -0.21 -1.43 16 3 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 4 C 0.08 1.43 5.23 37.16 0.19 1.62 16 5 O -0.38 -8.92 9.94 -35.23 -0.35 -9.27 16 6 C 0.09 2.34 5.58 37.16 0.21 2.55 16 7 C 0.06 1.52 1.97 -155.66 -0.31 1.22 16 8 C -0.49 -13.87 8.97 -34.43 -0.31 -14.17 16 9 H 0.06 1.72 7.91 -52.49 -0.42 1.30 16 10 C 0.08 2.13 5.02 -17.82 -0.09 2.04 16 11 N -0.87 -24.78 11.18 55.43 0.62 -24.16 16 12 Si 0.89 21.45 29.60 -169.99 -5.03 16.42 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 15 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 16 C -0.20 -4.78 9.88 -26.73 -0.26 -5.04 16 17 C -0.20 -4.69 9.94 -26.73 -0.27 -4.95 16 18 C 0.10 1.19 2.01 -67.67 -0.14 1.05 16 19 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 20 C -0.15 -1.60 4.99 -26.65 -0.13 -1.73 16 21 C -0.12 -1.08 6.00 -26.61 -0.16 -1.24 16 22 C -0.16 -1.42 6.08 -26.66 -0.16 -1.58 16 23 C 0.06 0.60 6.55 -3.84 -0.03 0.57 16 24 N -0.68 -8.57 5.66 -106.70 -0.60 -9.17 16 25 H 0.05 0.58 6.19 -51.93 -0.32 0.26 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.10 7.95 -51.93 -0.41 0.68 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 1.11 7.46 -51.93 -0.39 0.73 16 30 H 0.01 0.14 7.95 -51.93 -0.41 -0.28 16 31 H 0.10 2.64 5.46 -51.93 -0.28 2.35 16 32 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 33 H 0.06 1.40 8.09 -51.93 -0.42 0.98 16 34 H 0.08 1.89 8.14 -51.93 -0.42 1.47 16 35 H 0.07 1.67 8.14 -51.92 -0.42 1.24 16 36 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.72 6.36 -51.93 -0.33 0.39 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.34 4.32 8.79 -39.29 -0.35 3.97 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -28.87 349.58 -9.82 -38.68 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -8.38 Total: 4.97 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -1.33 Total: -22.74 kcal Atomic # 7 Polarization: -33.35 SS G_CDS: 0.02 Total: -33.33 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.35 Total: -9.27 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.87 -9.82 -38.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697241812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.410 kcal (2) G-P(sol) polarization free energy of solvation -28.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds