Wall clock time and date at job start Mon Mar 30 2020 06:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47035 * 2 1 4 4 C 1.53006 * 109.46892 * 119.99606 * 2 1 3 5 5 O 1.42900 * 109.47112 * 295.37239 * 4 2 1 6 6 C 1.42900 * 113.99631 * 182.46886 * 5 4 2 7 7 C 1.52998 * 109.47066 * 178.29420 * 6 5 4 8 8 C 1.50708 * 115.55040 * 280.52543 * 7 6 5 9 9 H 1.07997 * 120.00395 * 144.26188 * 8 7 6 10 10 C 1.37882 * 119.99633 * 324.26304 * 8 7 6 11 11 N 1.31515 * 119.99945 * 337.40305 * 10 8 7 12 12 Si 1.86798 * 120.00037 * 157.40709 * 10 8 7 13 13 H 1.48501 * 109.46793 * 59.99608 * 12 10 8 14 14 H 1.48500 * 109.47061 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46973 * 300.00225 * 12 10 8 16 16 C 1.53000 * 117.50073 * 134.81575 * 7 6 5 17 17 C 1.52997 * 117.49988 * 66.19216 * 7 6 5 18 18 C 1.52993 * 109.47191 * 239.99372 * 2 1 3 19 19 H 1.09005 * 109.45764 * 300.03205 * 18 2 1 20 20 C 1.53050 * 109.46041 * 60.00207 * 18 2 1 21 21 C 1.53116 * 109.30718 * 179.21324 * 20 18 2 22 22 C 1.53112 * 109.16425 * 302.32582 * 21 20 18 23 23 C 1.53032 * 109.27985 * 57.65610 * 22 21 20 24 24 N 1.46841 * 109.52413 * 300.82138 * 23 22 21 25 25 H 1.08997 * 109.47146 * 65.08300 * 1 2 3 26 26 H 1.08994 * 109.47258 * 185.08645 * 1 2 3 27 27 H 1.09003 * 109.47154 * 305.08561 * 1 2 3 28 28 H 1.09002 * 109.47052 * 55.37195 * 4 2 1 29 29 H 1.09002 * 109.47022 * 175.37170 * 4 2 1 30 30 H 1.08998 * 109.47228 * 298.29485 * 6 5 4 31 31 H 1.09007 * 109.47324 * 58.29680 * 6 5 4 32 32 H 0.97001 * 119.99675 * 185.19888 * 11 10 8 33 33 H 1.08997 * 117.49943 * 0.02562 * 16 7 6 34 34 H 1.09005 * 117.49555 * 145.02000 * 16 7 6 35 35 H 1.09007 * 117.50087 * 214.97991 * 17 7 6 36 36 H 1.08993 * 117.49847 * 0.02562 * 17 7 6 37 37 H 1.08996 * 109.49986 * 59.25032 * 20 18 2 38 38 H 1.08996 * 109.49975 * 299.17323 * 20 18 2 39 39 H 1.08996 * 109.52396 * 62.23604 * 21 20 18 40 40 H 1.09006 * 109.52009 * 182.42282 * 21 20 18 41 41 H 1.09004 * 109.50672 * 177.59885 * 22 21 20 42 42 H 1.09004 * 109.50399 * 297.67976 * 22 21 20 43 43 H 1.09001 * 109.46248 * 60.83655 * 23 22 21 44 44 H 1.09003 * 109.46551 * 180.81706 * 23 22 21 45 45 H 1.00899 * 111.00639 * 297.64100 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 8 1.6544 0.0124 2.4135 6 6 2.1310 -0.5488 3.6383 7 6 1.6970 0.3368 4.8080 8 6 2.5288 1.5736 5.0305 9 1 2.0598 2.4869 5.3655 10 6 3.8889 1.5392 4.8063 11 7 4.5316 0.3922 4.8375 12 14 4.8185 3.1216 4.4584 13 1 4.6679 4.0474 5.6097 14 1 6.2573 2.8158 4.2545 15 1 4.2693 3.7596 3.2351 16 6 1.1178 -0.3570 6.0425 17 6 0.1991 0.4300 5.1056 18 6 2.0400 -0.7214 -1.2491 19 1 1.6761 -1.7488 -1.2491 20 6 1.5298 0.0002 -2.4987 21 6 2.0582 -0.7129 -3.7463 22 6 3.5883 -0.7428 -3.6980 23 6 4.0397 -1.4430 -2.4143 24 7 3.5093 -0.7226 -1.2498 25 1 -0.3633 0.4329 -0.9320 26 1 -0.3633 -1.0236 0.0911 27 1 -0.3633 0.5907 0.8410 28 1 1.6105 -1.7221 1.2918 29 1 3.1268 -0.7936 1.2089 30 1 1.7158 -1.5485 3.7658 31 1 3.2192 -0.6080 3.6117 32 1 5.4980 0.3754 4.7550 33 1 1.0463 -1.4445 6.0215 34 1 1.3385 0.0809 7.0159 35 1 -0.1846 1.3857 5.4628 36 1 -0.4770 -0.1400 4.4685 37 1 1.8818 1.0317 -2.4924 38 1 0.4399 -0.0123 -2.5065 39 1 1.6746 -1.7328 -3.7729 40 1 1.7324 -0.1768 -4.6377 41 1 3.9692 -1.2867 -4.5624 42 1 3.9728 0.2771 -3.7113 43 1 3.6664 -2.4671 -2.4087 44 1 5.1287 -1.4532 -2.3697 45 1 3.8715 0.2183 -1.2108 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697241812.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:41 Heat of formation + Delta-G solvation = -56.235181 kcal Electronic energy + Delta-G solvation = -21332.308293 eV Core-core repulsion = 18348.999168 eV Total energy + Delta-G solvation = -2983.309126 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.35038 -39.12902 -37.39648 -35.05669 -34.21933 -32.68823 -30.41695 -28.24230 -27.45071 -26.39467 -24.47396 -23.74869 -22.89883 -21.33822 -21.22366 -20.81795 -18.29496 -17.31008 -16.87418 -16.49090 -16.40299 -15.82210 -15.78770 -15.55715 -15.17364 -14.92037 -14.52293 -14.19596 -13.73134 -13.69303 -13.39861 -13.10458 -13.00156 -12.78133 -12.64801 -12.44055 -12.32749 -12.13622 -12.09087 -12.05813 -11.80520 -11.58119 -11.49047 -11.23801 -11.13286 -11.07846 -10.56792 -10.25983 -9.86913 -9.18133 -8.13391 -6.12000 1.39645 1.44713 1.52008 2.42045 2.84903 3.06345 3.27997 3.68288 3.85512 3.95028 3.97913 4.10616 4.16795 4.30028 4.32890 4.44767 4.46769 4.51596 4.58604 4.61531 4.69125 4.77435 4.83459 4.88916 4.95393 4.97239 5.01576 5.03564 5.06964 5.11281 5.14806 5.15467 5.22738 5.24881 5.33600 5.42168 5.46608 5.55024 5.57308 5.93533 6.19184 6.42675 6.45326 6.71147 6.82434 7.43767 8.89733 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.019203 B = 0.005121 C = 0.004463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.754939 B = 5466.482501 C = 6272.353346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.074 4.074 3 H 0.059 0.941 4 C 0.074 3.926 5 O -0.398 6.398 6 C 0.104 3.896 7 C 0.020 3.980 8 C -0.515 4.515 9 H 0.050 0.950 10 C 0.036 3.964 11 N -0.895 5.895 12 Si 0.944 3.056 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.275 1.275 16 C -0.194 4.194 17 C -0.181 4.181 18 C 0.104 3.896 19 H 0.079 0.921 20 C -0.148 4.148 21 C -0.116 4.116 22 C -0.153 4.153 23 C 0.058 3.942 24 N -0.699 5.699 25 H 0.076 0.924 26 H 0.057 0.943 27 H 0.044 0.956 28 H 0.035 0.965 29 H 0.038 0.962 30 H 0.014 0.986 31 H 0.070 0.930 32 H 0.265 0.735 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.800 -3.745 -17.622 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 H 0.077 0.923 4 C -0.003 4.003 5 O -0.317 6.317 6 C 0.028 3.972 7 C 0.019 3.981 8 C -0.551 4.551 9 H 0.068 0.932 10 C -0.165 4.165 11 N -0.532 5.532 12 Si 0.770 3.230 13 H -0.196 1.196 14 H -0.205 1.205 15 H -0.201 1.201 16 C -0.232 4.232 17 C -0.219 4.219 18 C -0.006 4.006 19 H 0.098 0.902 20 C -0.187 4.187 21 C -0.154 4.154 22 C -0.193 4.193 23 C -0.071 4.071 24 N -0.328 5.328 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.662 -4.228 -17.276 18.159 hybrid contribution 0.608 1.103 -0.338 1.304 sum -3.054 -3.125 -17.614 18.148 Atomic orbital electron populations 1.21746 0.93579 1.02021 1.02027 1.21063 0.96935 0.99037 0.92301 0.92268 1.22405 0.98325 0.93963 0.85575 1.87809 1.76279 1.53348 1.14310 1.21997 1.00049 0.92192 0.83007 1.18977 0.91241 0.96080 0.91789 1.20648 0.92634 0.95484 1.46360 0.93205 1.25552 0.98128 0.98888 0.93953 1.69989 1.08336 1.26745 1.48168 0.85832 0.77371 0.80754 0.79068 1.19561 1.20505 1.20089 1.22957 1.07160 0.97113 0.95932 1.22740 0.94461 1.00752 1.03901 1.21447 0.87382 0.99307 0.92421 0.90247 1.22273 1.02085 0.99409 0.94950 1.21548 0.95385 1.00980 0.97443 1.22222 0.96412 1.01214 0.99419 1.22037 0.99899 0.97850 0.87342 1.60644 1.07358 1.22151 1.42693 0.90553 0.92398 0.93718 0.94646 0.94327 0.96802 0.91260 0.92604 0.90366 0.90792 0.90524 0.89724 0.92360 0.90112 0.91550 0.91022 0.90286 0.92340 0.91065 0.90541 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.62 8.82 71.98 0.63 -2.98 16 2 C -0.07 -2.22 2.35 -10.79 -0.03 -2.25 16 3 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 4 C 0.07 2.82 5.23 71.98 0.38 3.19 16 5 O -0.40 -18.79 9.94 -148.98 -1.48 -20.27 16 6 C 0.10 5.28 5.58 71.98 0.40 5.68 16 7 C 0.02 1.03 1.97 -52.93 -0.10 0.93 16 8 C -0.51 -29.63 8.97 25.60 0.23 -29.40 16 9 H 0.05 2.88 7.91 -2.91 -0.02 2.86 16 10 C 0.04 2.03 5.02 84.66 0.43 2.45 16 11 N -0.90 -51.54 11.18 21.45 0.24 -51.30 16 12 Si 0.94 44.38 29.60 68.60 2.03 46.41 16 13 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 14 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 15 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 16 C -0.19 -9.15 9.88 30.59 0.30 -8.85 16 17 C -0.18 -8.28 9.94 30.59 0.30 -7.97 16 18 C 0.10 2.46 2.01 44.92 0.09 2.55 16 19 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 20 C -0.15 -2.75 4.99 30.65 0.15 -2.60 16 21 C -0.12 -1.79 6.00 30.67 0.18 -1.61 16 22 C -0.15 -2.39 6.08 30.64 0.19 -2.20 16 23 C 0.06 1.11 6.55 86.33 0.57 1.68 16 24 N -0.70 -17.24 5.66 -491.50 -2.78 -20.02 16 25 H 0.08 1.61 6.19 -2.39 -0.01 1.59 16 26 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.04 1.39 7.95 -2.39 -0.02 1.38 16 28 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.59 7.46 -2.39 -0.02 1.57 16 30 H 0.01 0.66 7.95 -2.39 -0.02 0.65 16 31 H 0.07 3.91 5.46 -2.38 -0.01 3.89 16 32 H 0.26 14.44 8.32 -92.71 -0.77 13.67 16 33 H 0.08 3.40 8.09 -2.39 -0.02 3.38 16 34 H 0.07 3.52 8.14 -2.38 -0.02 3.50 16 35 H 0.08 3.41 8.14 -2.38 -0.02 3.39 16 36 H 0.08 3.55 8.14 -2.39 -0.02 3.53 16 37 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.08 1.37 6.36 -2.39 -0.02 1.35 16 39 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 41 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 43 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.34 8.53 8.79 -89.70 -0.79 7.74 16 Total: -1.00 -61.57 349.58 1.88 -59.69 By element: Atomic # 1 Polarization: 26.72 SS G_CDS: 0.15 Total: 26.87 kcal Atomic # 6 Polarization: -45.11 SS G_CDS: 3.72 Total: -41.38 kcal Atomic # 7 Polarization: -68.78 SS G_CDS: -2.54 Total: -71.32 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -1.48 Total: -20.27 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -61.57 1.88 -59.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697241812.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.455 kcal (2) G-P(sol) polarization free energy of solvation -61.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds