Wall clock time and date at job start Mon Mar 30 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46829 * 2 1 4 4 C 1.53002 * 109.47034 * 119.99428 * 2 1 3 5 5 O 1.42891 * 109.47425 * 299.76614 * 4 2 1 6 6 C 1.42905 * 114.00079 * 183.69538 * 5 4 2 7 7 C 1.53002 * 109.47052 * 176.48226 * 6 5 4 8 8 C 1.50696 * 115.55104 * 279.43139 * 7 6 5 9 9 H 1.08002 * 120.00004 * 144.46712 * 8 7 6 10 10 C 1.37880 * 120.00307 * 324.46487 * 8 7 6 11 11 N 1.31522 * 119.99831 * 339.50547 * 10 8 7 12 12 Si 1.86797 * 120.00089 * 159.50005 * 10 8 7 13 13 H 1.48499 * 109.46985 * 90.00475 * 12 10 8 14 14 H 1.48500 * 109.46989 * 210.00085 * 12 10 8 15 15 H 1.48491 * 109.47414 * 330.00412 * 12 10 8 16 16 C 1.52999 * 117.49452 * 133.72399 * 7 6 5 17 17 C 1.52997 * 59.99976 * 252.50797 * 16 7 6 18 18 C 1.52992 * 109.47133 * 239.99866 * 2 1 3 19 19 H 1.09001 * 109.46188 * 184.99850 * 18 2 1 20 20 C 1.53041 * 109.46551 * 65.02216 * 18 2 1 21 21 C 1.53115 * 109.27816 * 180.80376 * 20 18 2 22 22 C 1.53110 * 109.16409 * 57.65351 * 21 20 18 23 23 C 1.53036 * 109.27917 * 302.34648 * 22 21 20 24 24 N 1.46842 * 109.51547 * 59.18129 * 23 22 21 25 25 H 1.09009 * 109.46648 * 173.66479 * 1 2 3 26 26 H 1.09000 * 109.47078 * 293.66220 * 1 2 3 27 27 H 1.08999 * 109.47238 * 53.66450 * 1 2 3 28 28 H 1.09007 * 109.46852 * 59.76656 * 4 2 1 29 29 H 1.08995 * 109.46949 * 179.75793 * 4 2 1 30 30 H 1.08993 * 109.47201 * 296.48335 * 6 5 4 31 31 H 1.09000 * 109.46824 * 56.48651 * 6 5 4 32 32 H 0.96996 * 119.99864 * 185.15163 * 11 10 8 33 33 H 1.09000 * 117.50316 * 0.02562 * 16 7 6 34 34 H 1.09002 * 117.49635 * 145.01940 * 16 7 6 35 35 H 1.08996 * 117.50059 * 252.51018 * 17 16 7 36 36 H 1.09004 * 117.51438 * 107.48153 * 17 16 7 37 37 H 1.09004 * 109.49670 * 300.74464 * 20 18 2 38 38 H 1.09004 * 109.49904 * 60.81972 * 20 18 2 39 39 H 1.09008 * 109.51677 * 177.55943 * 21 20 18 40 40 H 1.08999 * 109.52182 * 297.68038 * 21 20 18 41 41 H 1.09005 * 109.50350 * 62.28232 * 22 21 20 42 42 H 1.09003 * 109.50736 * 182.36263 * 22 21 20 43 43 H 1.09003 * 109.46537 * 179.19407 * 23 22 21 44 44 H 1.08999 * 109.46251 * 299.17267 * 23 22 21 45 45 H 1.00907 * 110.99210 * 174.15038 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 8 1.5683 -0.0443 2.4160 6 6 2.0579 -0.5901 3.6426 7 6 1.5622 0.2610 4.8134 8 6 2.3402 1.5252 5.0731 9 1 1.8288 2.4140 5.4122 10 6 3.7049 1.5474 4.8778 11 7 4.3855 0.4220 4.8636 12 14 4.5872 3.1756 4.6332 13 1 5.0172 3.7084 5.9509 14 1 5.7780 2.9686 3.7704 15 1 3.6678 4.1441 3.9838 16 6 0.9810 -0.4726 6.0237 17 6 0.0553 0.2924 5.0757 18 6 2.0400 -0.7212 -1.2492 19 1 3.1264 -0.7994 -1.2054 20 6 1.6356 0.0695 -2.4955 21 6 2.1306 -0.6663 -3.7437 22 6 1.5454 -2.0811 -3.7583 23 6 1.9525 -2.8095 -2.4754 24 7 1.4549 -2.0667 -1.3106 25 1 -0.3633 -1.0215 -0.1134 26 1 -0.3633 0.4124 0.9413 27 1 -0.3634 0.6089 -0.8278 28 1 1.6733 -1.7476 1.2515 29 1 3.1300 -0.7249 1.2472 30 1 1.6946 -1.6114 3.7564 31 1 3.1478 -0.5914 3.6302 32 1 5.3533 0.4413 4.8013 33 1 0.9521 -1.5615 5.9860 34 1 1.1614 -0.0409 7.0082 35 1 -0.3734 1.2274 5.4365 36 1 -0.5831 -0.2930 4.4139 37 1 0.5499 0.1597 -2.5327 38 1 2.0822 1.0631 -2.4568 39 1 1.8072 -0.1290 -4.6353 40 1 3.2190 -0.7214 -3.7264 41 1 0.4583 -2.0247 -3.8154 42 1 1.9276 -2.6241 -4.6227 43 1 1.5255 -3.8124 -2.4761 44 1 3.0392 -2.8775 -2.4256 45 1 1.6278 -2.5755 -0.4566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697241814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:46 Heat of formation + Delta-G solvation = -38.112669 kcal Electronic energy + Delta-G solvation = -21323.485023 eV Core-core repulsion = 18340.961749 eV Total energy + Delta-G solvation = -2982.523274 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.26950 -37.40842 -35.73431 -33.72878 -32.16522 -32.00460 -29.26716 -26.57690 -25.66208 -24.77657 -23.98604 -22.74470 -21.06131 -20.25154 -19.21326 -18.91829 -16.66165 -16.23930 -15.53292 -15.12484 -14.81940 -14.50137 -14.38756 -14.19276 -13.83038 -13.66790 -13.22101 -12.98569 -12.49915 -12.30444 -12.23193 -11.69197 -11.39815 -11.34703 -11.15976 -10.93007 -10.91161 -10.72651 -10.53958 -10.44865 -10.34696 -10.21960 -10.19021 -9.94201 -9.27217 -9.19314 -8.64700 -8.50038 -8.39375 -7.91937 -6.07277 -4.01779 3.28000 3.35965 3.43860 4.13954 4.38550 4.40880 4.71614 4.80657 4.90595 5.03422 5.12162 5.28549 5.34911 5.38642 5.52249 5.56423 5.66269 5.69314 5.78433 5.82324 5.84852 5.91755 5.99863 6.07470 6.15353 6.23850 6.26990 6.29511 6.42665 6.45630 6.59865 6.62957 6.79415 6.81195 6.89888 6.95770 7.06812 7.13298 7.37097 7.40164 7.58174 7.97908 8.39160 8.47644 8.89830 9.53053 10.95669 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021644 B = 0.004721 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.334731 B = 5929.178104 C = 6558.481498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.084 4.084 3 H 0.078 0.922 4 C 0.069 3.931 5 O -0.375 6.375 6 C 0.088 3.912 7 C 0.056 3.944 8 C -0.483 4.483 9 H 0.061 0.939 10 C 0.073 3.927 11 N -0.879 5.879 12 Si 0.888 3.112 13 H -0.281 1.281 14 H -0.285 1.285 15 H -0.271 1.271 16 C -0.199 4.199 17 C -0.200 4.200 18 C 0.095 3.905 19 H 0.036 0.964 20 C -0.112 4.112 21 C -0.122 4.122 22 C -0.116 4.116 23 C 0.057 3.943 24 N -0.683 5.683 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.044 0.956 28 H 0.033 0.967 29 H 0.035 0.965 30 H 0.007 0.993 31 H 0.101 0.899 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.071 0.929 44 H 0.026 0.974 45 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 -5.171 -15.070 16.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.102 4.102 3 H 0.097 0.903 4 C -0.008 4.008 5 O -0.294 6.294 6 C 0.013 3.987 7 C 0.056 3.944 8 C -0.519 4.519 9 H 0.080 0.920 10 C -0.130 4.130 11 N -0.517 5.517 12 Si 0.716 3.284 13 H -0.207 1.207 14 H -0.211 1.211 15 H -0.195 1.195 16 C -0.237 4.237 17 C -0.237 4.237 18 C -0.014 4.014 19 H 0.054 0.946 20 C -0.150 4.150 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.072 4.072 24 N -0.316 5.316 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.063 0.937 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.025 0.975 31 H 0.118 0.882 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.045 0.955 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.933 -4.873 -15.478 16.697 hybrid contribution 1.662 0.256 0.304 1.709 sum -2.272 -4.617 -15.174 16.023 Atomic orbital electron populations 1.21637 0.93971 1.02073 1.01237 1.21156 0.97728 0.99641 0.91709 0.90322 1.22285 0.96973 0.94698 0.86891 1.87870 1.71400 1.56917 1.13226 1.22401 1.02151 0.92096 0.82095 1.18802 0.89450 0.95620 0.90577 1.20488 0.91785 0.95081 1.44589 0.92048 1.24927 0.97379 0.96329 0.94319 1.69850 1.06864 1.26017 1.48937 0.86646 0.79066 0.84444 0.78280 1.20724 1.21075 1.19537 1.22977 1.07794 0.96288 0.96666 1.22751 0.95716 1.01017 1.04228 1.21447 0.95812 0.89174 0.94996 0.94578 1.21645 1.02226 0.98004 0.93117 1.21583 1.00129 0.96094 0.98113 1.21573 1.01569 0.95731 0.96541 1.21894 0.97078 0.97000 0.91235 1.60358 1.62175 1.03350 1.05722 0.91906 0.91991 0.93723 0.94849 0.94635 0.97482 0.88194 0.92818 0.91856 0.90240 0.90781 0.91246 0.90684 0.91667 0.92031 0.92506 0.91206 0.92060 0.91034 0.95540 0.83665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.97 8.63 37.16 0.32 -1.65 16 2 C -0.08 -1.28 2.48 -90.62 -0.22 -1.51 16 3 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 4 C 0.07 1.26 5.14 37.16 0.19 1.45 16 5 O -0.38 -8.57 9.55 -35.23 -0.34 -8.91 16 6 C 0.09 2.17 5.60 37.16 0.21 2.38 16 7 C 0.06 1.45 1.98 -155.66 -0.31 1.14 16 8 C -0.48 -13.56 8.99 -34.44 -0.31 -13.87 16 9 H 0.06 1.73 7.90 -52.49 -0.41 1.31 16 10 C 0.07 2.00 5.07 -17.82 -0.09 1.91 16 11 N -0.88 -24.59 11.04 55.43 0.61 -23.98 16 12 Si 0.89 21.24 29.59 -169.99 -5.03 16.21 16 13 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 16 C -0.20 -4.70 9.88 -26.73 -0.26 -4.96 16 17 C -0.20 -4.60 9.93 -26.73 -0.27 -4.87 16 18 C 0.10 1.22 2.19 -67.73 -0.15 1.07 16 19 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 20 C -0.11 -1.26 5.15 -26.65 -0.14 -1.40 16 21 C -0.12 -1.17 6.00 -26.61 -0.16 -1.33 16 22 C -0.12 -1.08 6.09 -26.66 -0.16 -1.24 16 23 C 0.06 0.58 6.55 -3.84 -0.03 0.55 16 24 N -0.68 -8.13 5.41 -106.77 -0.58 -8.71 16 25 H 0.06 0.92 7.26 -51.92 -0.38 0.54 16 26 H 0.06 1.06 7.51 -51.93 -0.39 0.67 16 27 H 0.04 0.60 6.87 -51.93 -0.36 0.24 16 28 H 0.03 0.56 6.65 -51.92 -0.35 0.21 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.01 0.16 7.94 -51.93 -0.41 -0.25 16 31 H 0.10 2.68 5.34 -51.93 -0.28 2.40 16 32 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 33 H 0.06 1.39 8.08 -51.93 -0.42 0.97 16 34 H 0.08 1.87 8.14 -51.93 -0.42 1.45 16 35 H 0.07 1.67 8.14 -51.93 -0.42 1.24 16 36 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.07 0.87 6.68 -51.93 -0.35 0.53 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.34 4.16 7.01 -39.29 -0.28 3.88 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -28.42 345.96 -9.74 -38.16 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -8.25 Total: 4.33 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: -1.38 Total: -22.33 kcal Atomic # 7 Polarization: -32.72 SS G_CDS: 0.03 Total: -32.68 kcal Atomic # 8 Polarization: -8.57 SS G_CDS: -0.34 Total: -8.91 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.42 -9.74 -38.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697241814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.044 kcal (2) G-P(sol) polarization free energy of solvation -28.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds