Wall clock time and date at job start Mon Mar 30 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46829 * 2 1 4 4 C 1.53002 * 109.47034 * 119.99428 * 2 1 3 5 5 O 1.42891 * 109.47425 * 299.76614 * 4 2 1 6 6 C 1.42905 * 114.00079 * 183.69538 * 5 4 2 7 7 C 1.53002 * 109.47052 * 176.48226 * 6 5 4 8 8 C 1.50696 * 115.55104 * 279.43139 * 7 6 5 9 9 H 1.08002 * 120.00004 * 144.46712 * 8 7 6 10 10 C 1.37880 * 120.00307 * 324.46487 * 8 7 6 11 11 N 1.31522 * 119.99831 * 339.50547 * 10 8 7 12 12 Si 1.86797 * 120.00089 * 159.50005 * 10 8 7 13 13 H 1.48499 * 109.46985 * 90.00475 * 12 10 8 14 14 H 1.48500 * 109.46989 * 210.00085 * 12 10 8 15 15 H 1.48491 * 109.47414 * 330.00412 * 12 10 8 16 16 C 1.52999 * 117.49452 * 133.72399 * 7 6 5 17 17 C 1.52997 * 59.99976 * 252.50797 * 16 7 6 18 18 C 1.52992 * 109.47133 * 239.99866 * 2 1 3 19 19 H 1.09001 * 109.46188 * 184.99850 * 18 2 1 20 20 C 1.53041 * 109.46551 * 65.02216 * 18 2 1 21 21 C 1.53115 * 109.27816 * 180.80376 * 20 18 2 22 22 C 1.53110 * 109.16409 * 57.65351 * 21 20 18 23 23 C 1.53036 * 109.27917 * 302.34648 * 22 21 20 24 24 N 1.46842 * 109.51547 * 59.18129 * 23 22 21 25 25 H 1.09009 * 109.46648 * 173.66479 * 1 2 3 26 26 H 1.09000 * 109.47078 * 293.66220 * 1 2 3 27 27 H 1.08999 * 109.47238 * 53.66450 * 1 2 3 28 28 H 1.09007 * 109.46852 * 59.76656 * 4 2 1 29 29 H 1.08995 * 109.46949 * 179.75793 * 4 2 1 30 30 H 1.08993 * 109.47201 * 296.48335 * 6 5 4 31 31 H 1.09000 * 109.46824 * 56.48651 * 6 5 4 32 32 H 0.96996 * 119.99864 * 185.15163 * 11 10 8 33 33 H 1.09000 * 117.50316 * 0.02562 * 16 7 6 34 34 H 1.09002 * 117.49635 * 145.01940 * 16 7 6 35 35 H 1.08996 * 117.50059 * 252.51018 * 17 16 7 36 36 H 1.09004 * 117.51438 * 107.48153 * 17 16 7 37 37 H 1.09004 * 109.49670 * 300.74464 * 20 18 2 38 38 H 1.09004 * 109.49904 * 60.81972 * 20 18 2 39 39 H 1.09008 * 109.51677 * 177.55943 * 21 20 18 40 40 H 1.08999 * 109.52182 * 297.68038 * 21 20 18 41 41 H 1.09005 * 109.50350 * 62.28232 * 22 21 20 42 42 H 1.09003 * 109.50736 * 182.36263 * 22 21 20 43 43 H 1.09003 * 109.46537 * 179.19407 * 23 22 21 44 44 H 1.08999 * 109.46251 * 299.17267 * 23 22 21 45 45 H 1.00907 * 110.99210 * 174.15038 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 8 1.5683 -0.0443 2.4160 6 6 2.0579 -0.5901 3.6426 7 6 1.5622 0.2610 4.8134 8 6 2.3402 1.5252 5.0731 9 1 1.8288 2.4140 5.4122 10 6 3.7049 1.5474 4.8778 11 7 4.3855 0.4220 4.8636 12 14 4.5872 3.1756 4.6332 13 1 5.0172 3.7084 5.9509 14 1 5.7780 2.9686 3.7704 15 1 3.6678 4.1441 3.9838 16 6 0.9810 -0.4726 6.0237 17 6 0.0553 0.2924 5.0757 18 6 2.0400 -0.7212 -1.2492 19 1 3.1264 -0.7994 -1.2054 20 6 1.6356 0.0695 -2.4955 21 6 2.1306 -0.6663 -3.7437 22 6 1.5454 -2.0811 -3.7583 23 6 1.9525 -2.8095 -2.4754 24 7 1.4549 -2.0667 -1.3106 25 1 -0.3633 -1.0215 -0.1134 26 1 -0.3633 0.4124 0.9413 27 1 -0.3634 0.6089 -0.8278 28 1 1.6733 -1.7476 1.2515 29 1 3.1300 -0.7249 1.2472 30 1 1.6946 -1.6114 3.7564 31 1 3.1478 -0.5914 3.6302 32 1 5.3533 0.4413 4.8013 33 1 0.9521 -1.5615 5.9860 34 1 1.1614 -0.0409 7.0082 35 1 -0.3734 1.2274 5.4365 36 1 -0.5831 -0.2930 4.4139 37 1 0.5499 0.1597 -2.5327 38 1 2.0822 1.0631 -2.4568 39 1 1.8072 -0.1290 -4.6353 40 1 3.2190 -0.7214 -3.7264 41 1 0.4583 -2.0247 -3.8154 42 1 1.9276 -2.6241 -4.6227 43 1 1.5255 -3.8124 -2.4761 44 1 3.0392 -2.8775 -2.4256 45 1 1.6278 -2.5755 -0.4566 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697241814.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:45 Heat of formation + Delta-G solvation = -53.453435 kcal Electronic energy + Delta-G solvation = -21324.150249 eV Core-core repulsion = 18340.961749 eV Total energy + Delta-G solvation = -2983.188500 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.32943 -39.12179 -37.38959 -34.97673 -34.24736 -32.87477 -30.30309 -28.23166 -27.50792 -26.51111 -24.96219 -23.74361 -22.91353 -21.35274 -20.97477 -20.09469 -18.34197 -17.68892 -16.96171 -16.67615 -16.53511 -16.00590 -15.71623 -15.37176 -15.20817 -14.83408 -14.50472 -14.06925 -13.83369 -13.66185 -13.57380 -13.20684 -13.11612 -12.84169 -12.61536 -12.50366 -12.29254 -12.20492 -12.08573 -11.84723 -11.71277 -11.42602 -11.36805 -11.16976 -11.15092 -11.00854 -10.60092 -10.29245 -9.90158 -9.35445 -8.14842 -6.15865 1.37145 1.41484 1.52746 2.39636 2.80423 3.03102 3.21970 3.69355 3.79761 3.96299 3.99582 4.05568 4.16667 4.31112 4.37095 4.39786 4.46883 4.51355 4.52362 4.65475 4.67689 4.78479 4.83435 4.89513 4.94678 4.95472 4.97946 5.02754 5.06483 5.11050 5.15385 5.22325 5.22666 5.31549 5.37981 5.50553 5.53273 5.55199 5.60138 5.92530 6.13501 6.40374 6.41413 6.64755 6.79071 7.40802 8.87135 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.021644 B = 0.004721 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.334731 B = 5929.178104 C = 6558.481498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.078 4.078 3 H 0.064 0.936 4 C 0.066 3.934 5 O -0.393 6.393 6 C 0.099 3.901 7 C 0.018 3.982 8 C -0.510 4.510 9 H 0.050 0.950 10 C 0.033 3.967 11 N -0.899 5.899 12 Si 0.945 3.055 13 H -0.272 1.272 14 H -0.279 1.279 15 H -0.273 1.273 16 C -0.192 4.192 17 C -0.182 4.182 18 C 0.103 3.897 19 H 0.028 0.972 20 C -0.111 4.111 21 C -0.120 4.120 22 C -0.114 4.114 23 C 0.054 3.946 24 N -0.686 5.686 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.023 0.977 30 H 0.017 0.983 31 H 0.075 0.925 32 H 0.264 0.736 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.025 0.975 45 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 -5.495 -16.640 17.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 H 0.083 0.917 4 C -0.011 4.011 5 O -0.312 6.312 6 C 0.023 3.977 7 C 0.018 3.982 8 C -0.547 4.547 9 H 0.068 0.932 10 C -0.167 4.167 11 N -0.537 5.537 12 Si 0.771 3.229 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.197 1.197 16 C -0.230 4.230 17 C -0.219 4.219 18 C -0.007 4.007 19 H 0.046 0.954 20 C -0.149 4.149 21 C -0.157 4.157 22 C -0.151 4.151 23 C -0.075 4.075 24 N -0.319 5.319 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.035 0.965 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.043 0.957 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.313 -5.204 -17.053 18.343 hybrid contribution 1.760 0.319 0.784 1.953 sum -2.553 -4.885 -16.269 17.177 Atomic orbital electron populations 1.21537 0.93382 1.02491 1.00518 1.21130 0.98090 0.98901 0.91606 0.91747 1.22505 0.96398 0.95791 0.86374 1.87839 1.71591 1.57945 1.13851 1.22109 1.00528 0.92380 0.82718 1.18985 0.91189 0.95932 0.92137 1.20721 0.92603 0.95781 1.45582 0.93204 1.25562 0.97920 0.99282 0.93978 1.69942 1.07087 1.27492 1.49186 0.85753 0.77956 0.80772 0.78454 1.19803 1.20477 1.19745 1.22961 1.07125 0.97156 0.95787 1.22737 0.94383 1.01137 1.03618 1.21332 0.95192 0.89835 0.94344 0.95440 1.21640 1.02145 0.98026 0.93081 1.21581 1.00086 0.96374 0.97683 1.21576 1.01418 0.95490 0.96662 1.22007 0.97080 0.97538 0.90827 1.60394 1.62177 1.03039 1.06316 0.91379 0.94492 0.92038 0.93168 0.95847 0.96475 0.90712 0.92625 0.90236 0.90775 0.90595 0.89687 0.90812 0.91639 0.90594 0.92578 0.91454 0.90231 0.89778 0.95683 0.84041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.54 8.63 71.98 0.62 -2.92 16 2 C -0.08 -2.38 2.48 -10.79 -0.03 -2.41 16 3 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 4 C 0.07 2.42 5.14 71.98 0.37 2.79 16 5 O -0.39 -18.12 9.55 -148.98 -1.42 -19.54 16 6 C 0.10 4.89 5.60 71.98 0.40 5.30 16 7 C 0.02 0.94 1.98 -52.93 -0.11 0.83 16 8 C -0.51 -29.05 8.99 25.60 0.23 -28.82 16 9 H 0.05 2.85 7.90 -2.91 -0.02 2.83 16 10 C 0.03 1.83 5.07 84.65 0.43 2.26 16 11 N -0.90 -50.85 11.04 21.45 0.24 -50.61 16 12 Si 0.95 43.88 29.59 68.60 2.03 45.91 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 15 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 16 C -0.19 -8.94 9.88 30.59 0.30 -8.64 16 17 C -0.18 -8.21 9.93 30.59 0.30 -7.91 16 18 C 0.10 2.53 2.19 44.94 0.10 2.63 16 19 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 20 C -0.11 -2.32 5.15 30.65 0.16 -2.16 16 21 C -0.12 -2.03 6.00 30.67 0.18 -1.85 16 22 C -0.11 -1.80 6.09 30.64 0.19 -1.61 16 23 C 0.05 0.98 6.55 86.33 0.57 1.55 16 24 N -0.69 -15.30 5.41 -491.70 -2.66 -17.96 16 25 H 0.07 1.89 7.26 -2.38 -0.02 1.88 16 26 H 0.04 1.25 7.51 -2.39 -0.02 1.23 16 27 H 0.06 1.56 6.87 -2.39 -0.02 1.54 16 28 H 0.05 1.65 6.65 -2.38 -0.02 1.63 16 29 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.02 0.79 7.94 -2.39 -0.02 0.77 16 31 H 0.08 4.10 5.34 -2.39 -0.01 4.08 16 32 H 0.26 14.12 8.32 -92.71 -0.77 13.35 16 33 H 0.08 3.39 8.08 -2.39 -0.02 3.37 16 34 H 0.07 3.47 8.14 -2.39 -0.02 3.45 16 35 H 0.08 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.08 3.54 8.14 -2.39 -0.02 3.53 16 37 H 0.07 1.56 6.68 -2.39 -0.02 1.55 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 1.12 8.14 -2.38 -0.02 1.11 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.34 7.82 7.01 -89.69 -0.63 7.20 16 Total: -1.00 -60.07 345.96 2.21 -57.85 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.31 Total: 25.31 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 3.72 Total: -40.96 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -2.42 Total: -68.57 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -1.42 Total: -19.54 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -60.07 2.21 -57.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697241814.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.401 kcal (2) G-P(sol) polarization free energy of solvation -60.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds