Wall clock time and date at job start Mon Mar 30 2020 08:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 108.78579 * 2 1 4 4 C 1.54073 * 108.81249 * 118.40876 * 2 1 3 5 5 C 1.50467 * 112.49761 * 79.14145 * 4 2 1 6 6 C 1.54245 * 108.52021 * 94.15795 * 5 4 2 7 7 C 1.45544 * 112.40463 * 280.00385 * 6 5 4 8 8 H 1.08999 * 108.89987 * 301.28025 * 7 6 5 9 9 N 1.46900 * 108.89665 * 182.68440 * 7 6 5 10 10 C 1.46904 * 110.99611 * 83.60715 * 9 7 6 11 11 C 1.52999 * 109.46930 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47088 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.47329 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46894 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00599 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99675 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00210 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00019 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.54250 * 112.32495 * 61.98440 * 7 6 5 23 23 C 1.50551 * 108.48062 * 279.87952 * 22 7 6 24 24 H 1.09000 * 109.47571 * 301.59295 * 1 2 3 25 25 H 1.09006 * 109.47045 * 61.59584 * 1 2 3 26 26 H 1.09008 * 109.47386 * 181.58933 * 1 2 3 27 27 H 1.08997 * 109.46823 * 178.40485 * 3 2 1 28 28 H 1.09002 * 109.46931 * 298.40496 * 3 2 1 29 29 H 1.08997 * 109.46846 * 58.40478 * 3 2 1 30 30 H 1.08998 * 108.87331 * 318.36633 * 4 2 1 31 31 H 1.08995 * 108.80055 * 199.86963 * 4 2 1 32 32 H 1.09003 * 109.63219 * 334.45184 * 5 4 2 33 33 H 1.08997 * 109.63185 * 213.86472 * 5 4 2 34 34 H 1.08998 * 108.89669 * 159.25399 * 6 5 4 35 35 H 1.08993 * 108.81961 * 40.70565 * 6 5 4 36 36 H 1.00892 * 111.00132 * 207.56071 * 9 7 6 37 37 H 1.09000 * 109.46908 * 59.99982 * 10 9 7 38 38 H 1.08998 * 109.47087 * 300.00161 * 10 9 7 39 39 H 1.09000 * 109.47102 * 59.99813 * 11 10 9 40 40 H 1.08998 * 109.47172 * 299.99870 * 11 10 9 41 41 H 1.09000 * 109.47250 * 59.99968 * 12 11 10 42 42 H 1.08999 * 109.47531 * 299.99756 * 12 11 10 43 43 H 1.08995 * 109.46729 * 60.00173 * 13 12 11 44 44 H 1.09007 * 109.46460 * 300.00028 * 13 12 11 45 45 H 0.96998 * 119.99640 * 180.02562 * 17 16 14 46 46 H 1.08998 * 109.62888 * 39.67661 * 22 7 6 47 47 H 1.08999 * 109.62420 * 160.25364 * 22 7 6 48 48 H 1.09001 * 108.92621 * 333.51099 * 23 22 7 49 49 H 1.09009 * 108.83359 * 214.96220 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0227 1.4485 0.0000 4 6 2.0268 -0.6939 1.2828 5 6 1.9646 -2.1942 1.1869 6 6 3.3392 -2.7125 0.7170 7 6 3.5190 -2.5825 -0.7215 8 1 2.7311 -3.1403 -1.2276 9 7 4.8200 -3.1551 -1.0920 10 6 4.7251 -4.6112 -1.2618 11 6 6.0965 -5.1703 -1.6459 12 6 5.9978 -6.6869 -1.8222 13 6 7.3694 -7.2461 -2.2057 14 6 7.2720 -8.7398 -2.3798 15 1 6.3263 -9.2402 -2.2323 16 6 8.3899 -9.4675 -2.7287 17 7 8.3051 -10.7712 -2.8802 18 14 10.0254 -8.6020 -2.9847 19 1 10.1523 -8.1942 -4.4070 20 1 10.0897 -7.3984 -2.1171 21 1 11.1343 -9.5251 -2.6336 22 6 3.4690 -1.1130 -1.1877 23 6 2.0269 -0.6916 -1.2839 24 1 -0.3634 0.5384 0.8753 25 1 -0.3633 0.4889 -0.9040 26 1 -0.3634 -1.0273 0.0285 27 1 3.1122 1.4616 0.0286 28 1 1.6768 1.9499 -0.9040 29 1 1.6299 1.9658 0.8753 30 1 1.4108 -0.3682 2.1210 31 1 3.0586 -0.3947 1.4669 32 1 1.1987 -2.4837 0.4674 33 1 1.7298 -2.6142 2.1649 34 1 3.4326 -3.7634 0.9907 35 1 4.1205 -2.1456 1.2230 36 1 5.1839 -2.7169 -1.9248 37 1 4.0060 -4.8391 -2.0487 38 1 4.3968 -5.0654 -0.3270 39 1 6.8152 -4.9423 -0.8588 40 1 6.4252 -4.7162 -2.5807 41 1 5.2790 -6.9152 -2.6091 42 1 5.6694 -7.1408 -0.8872 43 1 8.0878 -7.0178 -1.4184 44 1 7.6983 -6.7923 -3.1406 45 1 9.0917 -11.2831 -3.1253 46 1 3.9891 -0.4822 -0.4668 47 1 3.9419 -1.0229 -2.1656 48 1 1.4128 -1.5727 -1.4702 49 1 1.9168 -0.0021 -2.1211 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697620490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:54:59 Heat of formation + Delta-G solvation = -48.330827 kcal Electronic energy + Delta-G solvation = -20719.604303 eV Core-core repulsion = 17872.471031 eV Total energy + Delta-G solvation = -2847.133273 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.09146 -36.99676 -34.86094 -33.13884 -32.40461 -31.29640 -28.69955 -27.60707 -27.18292 -25.00702 -23.39391 -22.65296 -21.12796 -20.39612 -19.87101 -18.52980 -16.64924 -16.09526 -15.83336 -15.55685 -14.87764 -14.59397 -14.19006 -14.12021 -13.59680 -13.49625 -13.25786 -12.94285 -12.70163 -12.60451 -12.54428 -12.09234 -11.92956 -11.81826 -11.77210 -11.66817 -11.25437 -10.99979 -10.83122 -10.75204 -10.65796 -10.58212 -10.51503 -10.42953 -10.22983 -9.84140 -9.63868 -9.42056 -9.11102 -8.49445 -8.36869 -6.00145 -3.97532 3.34048 3.41167 3.46305 4.03783 4.32369 4.39976 4.49528 4.55194 4.72935 4.90916 4.94075 5.01134 5.18427 5.23068 5.33542 5.34711 5.35875 5.39702 5.41009 5.45913 5.49421 5.55365 5.65651 5.72451 5.76098 5.82250 5.85869 5.86241 5.91476 6.02762 6.05339 6.07423 6.12923 6.15253 6.22654 6.25730 6.31954 6.44156 6.71156 6.81330 6.95932 7.17565 7.38195 7.45569 7.51799 7.85375 8.59404 9.05253 9.62967 11.13494 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.047431 B = 0.002635 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.184265 B =10622.701566 C =10822.909391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.063 4.063 3 C -0.143 4.143 4 C -0.107 4.107 5 C -0.117 4.117 6 C -0.110 4.110 7 C 0.093 3.907 8 H 0.036 0.964 9 N -0.692 5.692 10 C 0.059 3.941 11 C -0.118 4.118 12 C -0.101 4.101 13 C -0.014 4.014 14 C -0.519 4.519 15 H 0.070 0.930 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.278 1.278 20 H -0.265 1.265 21 H -0.288 1.288 22 C -0.117 4.117 23 C -0.107 4.107 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.067 0.933 36 H 0.338 0.662 37 H 0.026 0.974 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.015 0.985 44 H 0.009 0.991 45 H 0.262 0.738 46 H 0.073 0.927 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.931 25.246 6.375 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.063 4.063 3 C -0.200 4.200 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.148 4.148 7 C -0.017 4.017 8 H 0.054 0.946 9 N -0.324 5.324 10 C -0.070 4.070 11 C -0.156 4.156 12 C -0.139 4.139 13 C -0.051 4.051 14 C -0.557 4.557 15 H 0.088 0.912 16 C -0.137 4.137 17 N -0.545 5.545 18 Si 0.709 3.291 19 H -0.204 1.204 20 H -0.189 1.189 21 H -0.214 1.214 22 C -0.155 4.155 23 C -0.145 4.145 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.156 0.844 37 H 0.044 0.956 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.033 0.967 44 H 0.028 0.972 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.603 25.043 6.980 29.819 hybrid contribution 0.430 0.165 -1.074 1.169 sum -14.172 25.209 5.906 29.516 Atomic orbital electron populations 1.21958 0.94933 1.01714 1.01434 1.20980 0.95218 0.95225 0.94850 1.21962 1.01190 0.95457 1.01417 1.21431 1.01432 0.95298 0.96311 1.21318 0.97517 0.95501 1.01148 1.20490 0.96669 1.01793 0.95813 1.20450 0.90480 0.94223 0.96524 0.94574 1.60659 1.25559 1.04819 1.41315 1.22097 0.97853 0.86991 1.00025 1.21665 0.95681 0.97237 1.00996 1.21414 0.99835 0.92007 1.00669 1.19571 0.93047 0.96722 0.95795 1.21197 0.97306 0.90568 1.46649 0.91150 1.25058 0.99031 0.94731 0.94878 1.69925 1.29945 1.05879 1.48788 0.86754 0.83658 0.79873 0.78865 1.20378 1.18942 1.21450 1.21562 0.96765 0.95850 1.01299 1.21406 0.96162 1.00262 0.96620 0.92815 0.92926 0.92626 0.92559 0.92858 0.92914 0.92512 0.91822 0.91793 0.91916 0.92153 0.91403 0.84360 0.95570 0.91242 0.91710 0.92827 0.93128 0.92864 0.96652 0.97239 0.92824 0.90850 0.91963 0.92010 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 8.11 37.16 0.30 -0.63 16 2 C -0.06 -0.44 0.50 -153.39 -0.08 -0.51 16 3 C -0.14 -0.93 8.12 37.16 0.30 -0.63 16 4 C -0.11 -0.80 4.09 -27.44 -0.11 -0.91 16 5 C -0.12 -0.97 5.55 -27.35 -0.15 -1.12 16 6 C -0.11 -1.11 4.72 -29.60 -0.14 -1.25 16 7 C 0.09 0.95 2.04 -70.57 -0.14 0.81 16 8 H 0.04 0.40 7.08 -51.93 -0.37 0.03 16 9 N -0.69 -8.39 6.25 -109.79 -0.69 -9.08 16 10 C 0.06 0.83 5.44 -3.82 -0.02 0.81 16 11 C -0.12 -1.94 5.47 -26.73 -0.15 -2.09 16 12 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 13 C -0.01 -0.34 4.04 -27.88 -0.11 -0.46 16 14 C -0.52 -15.26 9.66 -34.44 -0.33 -15.59 16 15 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.91 -28.57 13.96 55.43 0.77 -27.80 16 18 Si 0.88 22.29 27.47 -169.99 -4.67 17.62 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.26 -6.46 6.54 56.52 0.37 -6.09 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C -0.12 -1.00 5.05 -27.30 -0.14 -1.14 16 23 C -0.11 -0.81 4.09 -27.40 -0.11 -0.93 16 24 H 0.05 0.33 8.11 -51.93 -0.42 -0.09 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.37 7.38 -51.92 -0.38 -0.01 16 27 H 0.06 0.38 7.39 -51.93 -0.38 -0.01 16 28 H 0.05 0.33 8.04 -51.93 -0.42 -0.09 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.40 7.96 -51.93 -0.41 -0.02 16 31 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 32 H 0.06 0.54 6.21 -51.93 -0.32 0.22 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.69 7.03 -51.93 -0.37 0.32 16 35 H 0.07 0.73 7.46 -51.93 -0.39 0.34 16 36 H 0.34 3.83 8.00 -39.30 -0.31 3.52 16 37 H 0.03 0.37 8.04 -51.93 -0.42 -0.05 16 38 H 0.07 0.99 7.11 -51.93 -0.37 0.62 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.38 7.20 -51.93 -0.37 0.00 16 44 H 0.01 0.23 7.57 -51.93 -0.39 -0.17 16 45 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 46 H 0.07 0.65 6.21 -51.93 -0.32 0.32 16 47 H 0.06 0.52 7.63 -51.93 -0.40 0.13 16 48 H 0.06 0.51 6.47 -51.93 -0.34 0.17 16 49 H 0.06 0.43 7.90 -51.92 -0.41 0.02 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -30.41 358.47 -9.97 -40.39 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -9.67 Total: -2.51 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: -1.12 Total: -24.02 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.09 Total: -36.88 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.67 Total: 17.62 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.41 -9.97 -40.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697620490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.944 kcal (2) G-P(sol) polarization free energy of solvation -30.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds