Wall clock time and date at job start Mon Mar 30 2020 08:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 108.78579 * 2 1 4 4 C 1.54073 * 108.81249 * 118.40876 * 2 1 3 5 5 C 1.50467 * 112.49761 * 79.14145 * 4 2 1 6 6 C 1.54245 * 108.52021 * 94.15795 * 5 4 2 7 7 C 1.45544 * 112.40463 * 280.00385 * 6 5 4 8 8 H 1.08999 * 108.89987 * 301.28025 * 7 6 5 9 9 N 1.46900 * 108.89665 * 182.68440 * 7 6 5 10 10 C 1.46904 * 110.99611 * 83.60715 * 9 7 6 11 11 C 1.52999 * 109.46930 * 180.02562 * 10 9 7 12 12 C 1.52995 * 109.47088 * 179.97438 * 11 10 9 13 13 C 1.53007 * 109.47329 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46894 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00599 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99675 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00210 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00019 * 0.02562 * 16 14 13 19 19 H 1.48503 * 109.46845 * 269.99914 * 18 16 14 20 20 H 1.48503 * 109.47399 * 29.99403 * 18 16 14 21 21 H 1.48498 * 109.47295 * 150.00010 * 18 16 14 22 22 C 1.54250 * 112.32495 * 61.98440 * 7 6 5 23 23 C 1.50551 * 108.48062 * 279.87952 * 22 7 6 24 24 H 1.09000 * 109.47571 * 301.59295 * 1 2 3 25 25 H 1.09006 * 109.47045 * 61.59584 * 1 2 3 26 26 H 1.09008 * 109.47386 * 181.58933 * 1 2 3 27 27 H 1.08997 * 109.46823 * 178.40485 * 3 2 1 28 28 H 1.09002 * 109.46931 * 298.40496 * 3 2 1 29 29 H 1.08997 * 109.46846 * 58.40478 * 3 2 1 30 30 H 1.08998 * 108.87331 * 318.36633 * 4 2 1 31 31 H 1.08995 * 108.80055 * 199.86963 * 4 2 1 32 32 H 1.09003 * 109.63219 * 334.45184 * 5 4 2 33 33 H 1.08997 * 109.63185 * 213.86472 * 5 4 2 34 34 H 1.08998 * 108.89669 * 159.25399 * 6 5 4 35 35 H 1.08993 * 108.81961 * 40.70565 * 6 5 4 36 36 H 1.00892 * 111.00132 * 207.56071 * 9 7 6 37 37 H 1.09000 * 109.46908 * 59.99982 * 10 9 7 38 38 H 1.08998 * 109.47087 * 300.00161 * 10 9 7 39 39 H 1.09000 * 109.47102 * 59.99813 * 11 10 9 40 40 H 1.08998 * 109.47172 * 299.99870 * 11 10 9 41 41 H 1.09000 * 109.47250 * 59.99968 * 12 11 10 42 42 H 1.08999 * 109.47531 * 299.99756 * 12 11 10 43 43 H 1.08995 * 109.46729 * 60.00173 * 13 12 11 44 44 H 1.09007 * 109.46460 * 300.00028 * 13 12 11 45 45 H 0.96998 * 119.99640 * 180.02562 * 17 16 14 46 46 H 1.08998 * 109.62888 * 39.67661 * 22 7 6 47 47 H 1.08999 * 109.62420 * 160.25364 * 22 7 6 48 48 H 1.09001 * 108.92621 * 333.51099 * 23 22 7 49 49 H 1.09009 * 108.83359 * 214.96220 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0227 1.4485 0.0000 4 6 2.0268 -0.6939 1.2828 5 6 1.9646 -2.1942 1.1869 6 6 3.3392 -2.7125 0.7170 7 6 3.5190 -2.5825 -0.7215 8 1 2.7311 -3.1403 -1.2276 9 7 4.8200 -3.1551 -1.0920 10 6 4.7251 -4.6112 -1.2618 11 6 6.0965 -5.1703 -1.6459 12 6 5.9978 -6.6869 -1.8222 13 6 7.3694 -7.2461 -2.2057 14 6 7.2720 -8.7398 -2.3798 15 1 6.3263 -9.2402 -2.2323 16 6 8.3899 -9.4675 -2.7287 17 7 8.3051 -10.7712 -2.8802 18 14 10.0254 -8.6020 -2.9847 19 1 10.1523 -8.1942 -4.4070 20 1 10.0897 -7.3984 -2.1171 21 1 11.1343 -9.5251 -2.6336 22 6 3.4690 -1.1130 -1.1877 23 6 2.0269 -0.6916 -1.2839 24 1 -0.3634 0.5384 0.8753 25 1 -0.3633 0.4889 -0.9040 26 1 -0.3634 -1.0273 0.0285 27 1 3.1122 1.4616 0.0286 28 1 1.6768 1.9499 -0.9040 29 1 1.6299 1.9658 0.8753 30 1 1.4108 -0.3682 2.1210 31 1 3.0586 -0.3947 1.4669 32 1 1.1987 -2.4837 0.4674 33 1 1.7298 -2.6142 2.1649 34 1 3.4326 -3.7634 0.9907 35 1 4.1205 -2.1456 1.2230 36 1 5.1839 -2.7169 -1.9248 37 1 4.0060 -4.8391 -2.0487 38 1 4.3968 -5.0654 -0.3270 39 1 6.8152 -4.9423 -0.8588 40 1 6.4252 -4.7162 -2.5807 41 1 5.2790 -6.9152 -2.6091 42 1 5.6694 -7.1408 -0.8872 43 1 8.0878 -7.0178 -1.4184 44 1 7.6983 -6.7923 -3.1406 45 1 9.0917 -11.2831 -3.1253 46 1 3.9891 -0.4822 -0.4668 47 1 3.9419 -1.0229 -2.1656 48 1 1.4128 -1.5727 -1.4702 49 1 1.9168 -0.0021 -2.1211 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697620490.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:54:58 Heat of formation + Delta-G solvation = -65.087026 kcal Electronic energy + Delta-G solvation = -20720.330907 eV Core-core repulsion = 17872.471031 eV Total energy + Delta-G solvation = -2847.859876 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79436 -37.96805 -36.31899 -34.66510 -33.58445 -32.53650 -30.12821 -28.12010 -28.07997 -26.33302 -24.56593 -23.31857 -22.53033 -21.81128 -21.00834 -19.12707 -18.85505 -17.05992 -16.61041 -16.46430 -16.32176 -15.86555 -15.45121 -15.03410 -14.78418 -14.31282 -14.30375 -14.14146 -13.95684 -13.70062 -13.38582 -13.29814 -13.05103 -12.86429 -12.66337 -12.52493 -12.39419 -12.28392 -12.20406 -11.80347 -11.75836 -11.56705 -11.45252 -11.37712 -11.29843 -11.23095 -11.04921 -11.02586 -10.91467 -10.76762 -9.34937 -8.30146 -6.34367 1.35410 1.37821 1.50563 2.36342 3.05036 3.12319 3.66410 3.74991 3.93786 4.05342 4.14670 4.15435 4.26473 4.32120 4.35843 4.43344 4.52116 4.57196 4.60312 4.74647 4.76949 4.81516 4.85136 4.87285 4.89649 4.96790 5.03252 5.09483 5.14967 5.17818 5.20452 5.22298 5.24445 5.26531 5.29538 5.33343 5.42383 5.50125 5.51934 5.52600 5.57165 5.64682 5.67940 5.68253 6.15308 6.28806 6.54027 6.73795 7.30396 8.86865 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.047431 B = 0.002635 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.184265 B =10622.701566 C =10822.909391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.061 4.061 3 C -0.141 4.141 4 C -0.105 4.105 5 C -0.111 4.111 6 C -0.107 4.107 7 C 0.094 3.906 8 H 0.030 0.970 9 N -0.695 5.695 10 C 0.069 3.931 11 C -0.105 4.105 12 C -0.095 4.095 13 C -0.012 4.012 14 C -0.535 4.535 15 H 0.029 0.971 16 C 0.000 4.000 17 N -0.953 5.953 18 Si 0.955 3.045 19 H -0.265 1.265 20 H -0.247 1.247 21 H -0.283 1.283 22 C -0.110 4.110 23 C -0.105 4.105 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.345 0.655 37 H 0.027 0.973 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.266 0.734 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.528 27.987 6.316 32.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.061 4.061 3 C -0.199 4.199 4 C -0.142 4.142 5 C -0.149 4.149 6 C -0.145 4.145 7 C -0.015 4.015 8 H 0.048 0.952 9 N -0.327 5.327 10 C -0.060 4.060 11 C -0.143 4.143 12 C -0.133 4.133 13 C -0.049 4.049 14 C -0.573 4.573 15 H 0.047 0.953 16 C -0.197 4.197 17 N -0.594 5.594 18 Si 0.778 3.222 19 H -0.190 1.190 20 H -0.170 1.170 21 H -0.209 1.209 22 C -0.148 4.148 23 C -0.142 4.142 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.164 0.836 37 H 0.045 0.955 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.085 0.915 48 H 0.074 0.926 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.220 27.804 6.926 31.989 hybrid contribution 0.222 -0.764 -1.037 1.307 sum -13.999 27.041 5.889 31.014 Atomic orbital electron populations 1.21945 0.94477 1.01619 1.01881 1.20965 0.95556 0.95427 0.94183 1.21942 1.01006 0.95045 1.01862 1.21400 1.01358 0.94528 0.96933 1.21274 0.96286 0.96195 1.01194 1.20470 0.97631 1.00692 0.95719 1.20493 0.89278 0.95218 0.96476 0.95231 1.60628 1.26732 1.03640 1.41671 1.21881 0.96248 0.88247 0.99669 1.21484 0.97133 0.94199 1.01502 1.21292 0.97277 0.94778 0.99981 1.19540 0.95573 0.93579 0.96243 1.21568 0.95892 0.93306 1.46578 0.95286 1.26100 1.03674 0.95455 0.94439 1.70082 1.31466 1.07827 1.50033 0.85584 0.77859 0.79113 0.79642 1.19003 1.16998 1.20881 1.21502 0.97516 0.94354 1.01381 1.21384 0.95328 1.00238 0.97293 0.92305 0.92573 0.93001 0.92835 0.92448 0.92474 0.91801 0.92262 0.91839 0.91610 0.93830 0.91971 0.83641 0.95523 0.91847 0.91867 0.91831 0.93597 0.93677 0.96349 0.96338 0.92493 0.90864 0.91536 0.92601 0.91526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.11 71.98 0.58 -1.00 16 2 C -0.06 -0.74 0.50 -51.46 -0.03 -0.77 16 3 C -0.14 -1.55 8.12 71.98 0.58 -0.96 16 4 C -0.10 -1.40 4.09 30.14 0.12 -1.27 16 5 C -0.11 -1.73 5.55 30.20 0.17 -1.56 16 6 C -0.11 -2.08 4.72 28.74 0.14 -1.94 16 7 C 0.09 1.83 2.04 43.06 0.09 1.91 16 8 H 0.03 0.63 7.08 -2.39 -0.02 0.61 16 9 N -0.69 -15.78 6.25 -501.25 -3.14 -18.92 16 10 C 0.07 1.84 5.44 86.30 0.47 2.31 16 11 C -0.11 -3.29 5.47 30.59 0.17 -3.13 16 12 C -0.10 -3.82 5.15 30.60 0.16 -3.66 16 13 C -0.01 -0.58 4.04 29.85 0.12 -0.46 16 14 C -0.54 -32.09 9.66 25.60 0.25 -31.85 16 15 H 0.03 1.91 7.99 -2.91 -0.02 1.88 16 16 C 0.00 -0.02 5.47 84.65 0.46 0.44 16 17 N -0.95 -61.36 13.96 21.45 0.30 -61.07 16 18 Si 0.96 45.41 27.47 68.60 1.88 47.29 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 22 C -0.11 -1.69 5.05 30.22 0.15 -1.54 16 23 C -0.10 -1.41 4.09 30.16 0.12 -1.28 16 24 H 0.06 0.60 8.11 -2.39 -0.02 0.58 16 25 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.05 0.62 7.38 -2.38 -0.02 0.60 16 27 H 0.05 0.62 7.39 -2.39 -0.02 0.60 16 28 H 0.06 0.58 8.04 -2.39 -0.02 0.57 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.77 7.96 -2.39 -0.02 0.75 16 31 H 0.06 0.85 6.43 -2.39 -0.02 0.84 16 32 H 0.06 1.00 6.21 -2.39 -0.01 0.98 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.04 0.98 7.03 -2.39 -0.02 0.96 16 35 H 0.06 1.27 7.46 -2.39 -0.02 1.26 16 36 H 0.34 7.08 8.00 -89.70 -0.72 6.37 16 37 H 0.03 0.71 8.04 -2.39 -0.02 0.69 16 38 H 0.06 1.78 7.11 -2.39 -0.02 1.76 16 39 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.02 0.87 7.20 -2.39 -0.02 0.86 16 44 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 45 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 46 H 0.07 1.15 6.21 -2.39 -0.01 1.14 16 47 H 0.07 0.98 7.63 -2.39 -0.02 0.96 16 48 H 0.06 0.83 6.47 -2.39 -0.02 0.82 16 49 H 0.07 0.82 7.90 -2.38 -0.02 0.80 16 Total: -1.00 -65.53 358.47 2.71 -62.82 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.10 Total: 14.62 kcal Atomic # 6 Polarization: -48.31 SS G_CDS: 3.56 Total: -44.75 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -2.84 Total: -79.98 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.29 kcal Total: -65.53 2.71 -62.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697620490.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.263 kcal (2) G-P(sol) polarization free energy of solvation -65.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds