Wall clock time and date at job start Mon Mar 30 2020 08:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 108.77284 * 2 1 4 4 C 1.50475 * 108.87864 * 118.51176 * 2 1 3 5 5 C 1.54238 * 108.52563 * 214.92893 * 4 2 1 6 6 C 1.45542 * 112.40321 * 280.00896 * 5 4 2 7 7 C 1.54245 * 112.40282 * 61.94137 * 6 5 4 8 8 H 1.08991 * 109.63207 * 39.91327 * 7 6 5 9 9 N 1.46904 * 109.62527 * 160.30070 * 7 6 5 10 10 C 1.46904 * 110.99481 * 274.99600 * 9 7 6 11 11 C 1.53007 * 109.46819 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47145 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46919 * 180.02562 * 12 11 10 14 14 C 1.50707 * 109.47007 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99609 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00182 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00214 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99986 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47625 * 89.99325 * 18 16 14 20 20 H 1.48501 * 109.47242 * 210.00044 * 18 16 14 21 21 H 1.48510 * 109.47005 * 329.99607 * 18 16 14 22 22 C 1.50477 * 108.51847 * 280.00354 * 7 6 5 23 23 C 1.54063 * 112.49318 * 94.15613 * 22 7 6 24 24 H 1.08993 * 109.47337 * 301.48865 * 1 2 3 25 25 H 1.09007 * 109.46919 * 61.48731 * 1 2 3 26 26 H 1.09002 * 109.47220 * 181.48343 * 1 2 3 27 27 H 1.09002 * 109.47530 * 166.23930 * 3 2 1 28 28 H 1.09002 * 109.47381 * 286.24287 * 3 2 1 29 29 H 1.09005 * 109.47177 * 46.24605 * 3 2 1 30 30 H 1.09003 * 109.62964 * 95.21267 * 4 2 1 31 31 H 1.09002 * 109.78743 * 334.73554 * 4 2 1 32 32 H 1.09003 * 108.89562 * 159.25881 * 5 4 2 33 33 H 1.08993 * 108.82185 * 40.71443 * 5 4 2 34 34 H 1.08994 * 108.90005 * 301.18371 * 6 5 4 35 35 H 1.09002 * 108.81640 * 182.63916 * 6 5 4 36 36 H 1.00898 * 111.00067 * 38.94921 * 9 7 6 37 37 H 1.09001 * 109.47201 * 60.00889 * 10 9 7 38 38 H 1.08996 * 109.47694 * 299.99875 * 10 9 7 39 39 H 1.08996 * 109.47179 * 299.99970 * 11 10 9 40 40 H 1.09000 * 109.46901 * 59.99892 * 11 10 9 41 41 H 1.08996 * 109.47203 * 300.00133 * 12 11 10 42 42 H 1.09000 * 109.47164 * 60.00230 * 12 11 10 43 43 H 1.08996 * 109.47267 * 300.00064 * 13 12 11 44 44 H 1.08999 * 109.47497 * 60.00395 * 13 12 11 45 45 H 0.96997 * 120.00058 * 179.97438 * 17 16 14 46 46 H 1.08993 * 108.87627 * 214.93343 * 22 7 6 47 47 H 1.08994 * 108.87461 * 333.37785 * 22 7 6 48 48 H 1.09004 * 108.81376 * 197.42459 * 23 22 7 49 49 H 1.09001 * 108.72995 * 79.08132 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0223 1.4486 0.0000 4 6 2.0169 -0.6796 1.2511 5 6 3.3099 0.0200 1.7174 6 6 4.4788 -0.4189 0.9694 7 6 4.3714 -0.0917 -0.5341 8 1 3.9265 0.8948 -0.6634 9 7 5.7093 -0.1129 -1.1405 10 6 6.3837 1.1814 -0.9729 11 6 7.7706 1.1208 -1.6162 12 6 8.4728 2.4690 -1.4423 13 6 9.8594 2.4086 -2.0861 14 6 10.5513 3.7364 -1.9143 15 1 10.0520 4.5425 -1.3971 16 6 11.8219 3.9217 -2.4162 17 7 12.4255 5.0805 -2.2667 18 14 12.6857 2.5272 -3.3100 19 1 12.3712 2.5982 -4.7595 20 1 14.1529 2.6481 -3.1152 21 1 12.2196 1.2265 -2.7655 22 6 3.5033 -1.1320 -1.1888 23 6 2.0286 -0.6959 -1.2810 24 1 -0.3633 0.5367 0.8763 25 1 -0.3633 0.4906 -0.9031 26 1 -0.3634 -1.0273 0.0266 27 1 3.0844 1.4714 0.2444 28 1 1.8671 1.8851 -0.9866 29 1 1.4664 2.0213 0.7423 30 1 2.2236 -1.7291 1.0410 31 1 1.2586 -0.6049 2.0306 32 1 3.4662 -0.1951 2.7745 33 1 3.1930 1.0961 1.5901 34 1 4.5903 -1.4965 1.0891 35 1 5.3618 0.0743 1.3758 36 1 6.2668 -0.8630 -0.7602 37 1 6.4849 1.4035 0.0894 38 1 5.7948 1.9628 -1.4530 39 1 8.3598 0.3394 -1.1364 40 1 7.6690 0.8988 -2.6785 41 1 7.8834 3.2502 -1.9223 42 1 8.5744 2.6914 -0.3801 43 1 10.4490 1.6273 -1.6065 44 1 9.7575 2.1864 -3.1483 45 1 13.3196 5.2108 -2.6196 46 1 3.8783 -1.3222 -2.1944 47 1 3.5628 -2.0548 -0.6119 48 1 1.4125 -1.5760 -1.4653 49 1 1.9186 -0.0086 -2.1199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697620499.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:55:02 Heat of formation + Delta-G solvation = -19.536408 kcal Electronic energy + Delta-G solvation = -21056.541536 eV Core-core repulsion = 18210.656883 eV Total energy + Delta-G solvation = -2845.884653 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66115 -36.78462 -34.70195 -33.20286 -32.48601 -31.24833 -28.64973 -27.94147 -26.95135 -25.09483 -23.56523 -22.52107 -21.30672 -20.36194 -19.86051 -18.33188 -16.64044 -16.29396 -15.91145 -15.52340 -14.85050 -14.60869 -14.25015 -14.02973 -13.70441 -13.48670 -13.16591 -13.06188 -12.74186 -12.57636 -12.40015 -12.16564 -11.93412 -11.80648 -11.69184 -11.45334 -11.20820 -11.02022 -10.86646 -10.73150 -10.60384 -10.52963 -10.42368 -10.34425 -9.84709 -9.83444 -9.64008 -9.42481 -9.11155 -8.49511 -8.32371 -6.00239 -3.97665 3.34294 3.41149 3.45902 4.16476 4.35707 4.40718 4.49443 4.54528 4.70205 4.87325 5.01312 5.05855 5.13884 5.18773 5.32471 5.34058 5.39259 5.39556 5.45756 5.50806 5.52528 5.61258 5.70302 5.72966 5.77025 5.84092 5.85930 5.88461 5.97675 6.02523 6.03197 6.09960 6.15181 6.18416 6.22087 6.27807 6.31855 6.42871 6.71431 6.81246 6.96588 7.19888 7.38443 7.46028 7.51760 7.85274 8.59255 9.05104 9.62916 11.13430 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.039934 B = 0.002869 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.984375 B = 9756.514941 C = 9903.669183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.063 4.063 3 C -0.174 4.174 4 C -0.105 4.105 5 C -0.135 4.135 6 C -0.147 4.147 7 C 0.069 3.931 8 H 0.101 0.899 9 N -0.686 5.686 10 C 0.059 3.941 11 C -0.118 4.118 12 C -0.101 4.101 13 C -0.014 4.014 14 C -0.519 4.519 15 H 0.070 0.930 16 C 0.064 3.936 17 N -0.906 5.906 18 Si 0.881 3.119 19 H -0.277 1.277 20 H -0.289 1.289 21 H -0.265 1.265 22 C -0.109 4.109 23 C -0.104 4.104 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.091 0.909 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.337 0.663 37 H 0.027 0.973 38 H 0.069 0.931 39 H 0.053 0.947 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.014 0.986 44 H 0.011 0.989 45 H 0.262 0.738 46 H 0.073 0.927 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.139 -13.816 6.239 28.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.063 4.063 3 C -0.230 4.230 4 C -0.143 4.143 5 C -0.172 4.172 6 C -0.186 4.186 7 C -0.041 4.041 8 H 0.119 0.881 9 N -0.315 5.315 10 C -0.070 4.070 11 C -0.156 4.156 12 C -0.139 4.139 13 C -0.051 4.051 14 C -0.557 4.557 15 H 0.089 0.911 16 C -0.137 4.137 17 N -0.546 5.546 18 Si 0.708 3.292 19 H -0.203 1.203 20 H -0.215 1.215 21 H -0.190 1.190 22 C -0.147 4.147 23 C -0.142 4.142 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.108 0.892 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.154 0.846 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.032 0.968 44 H 0.029 0.971 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.198 -13.571 5.552 28.294 hybrid contribution 0.817 -0.687 0.525 1.189 sum -23.381 -14.258 6.077 28.051 Atomic orbital electron populations 1.22000 0.94938 1.01428 1.01598 1.20253 0.95079 0.95785 0.95195 1.22807 1.03030 0.95476 1.01673 1.21389 0.96787 0.99685 0.96406 1.20741 0.94772 1.02420 0.99298 1.21221 0.98634 1.01616 0.97178 1.21856 0.90313 1.01254 0.90665 0.88148 1.60775 1.03612 1.05896 1.61221 1.22073 0.95694 0.90889 0.98344 1.21671 0.93756 0.99209 1.01006 1.21411 0.97530 0.94468 1.00505 1.19571 0.92619 0.97556 0.95403 1.21200 1.00283 0.97621 1.36618 0.91148 1.25052 0.97331 0.95503 0.95789 1.69922 1.14333 1.23402 1.46897 0.86755 0.78528 0.83462 0.80406 1.20305 1.21480 1.19004 1.21351 0.93685 0.97882 1.01799 1.21986 0.95660 0.99962 0.96560 0.92786 0.92824 0.92886 0.89155 0.92845 0.92883 0.91813 0.92063 0.92723 0.90022 0.92263 0.92337 0.84579 0.95483 0.91299 0.92837 0.91713 0.92874 0.93105 0.96808 0.97088 0.92822 0.90826 0.92761 0.92331 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 7.98 37.16 0.30 -0.67 16 2 C -0.06 -0.48 0.72 -155.21 -0.11 -0.59 16 3 C -0.17 -1.41 6.33 37.16 0.24 -1.17 16 4 C -0.11 -0.79 5.01 -27.34 -0.14 -0.93 16 5 C -0.13 -1.10 5.14 -29.60 -0.15 -1.26 16 6 C -0.15 -1.35 4.57 -29.60 -0.14 -1.49 16 7 C 0.07 0.68 2.08 -68.32 -0.14 0.54 16 8 H 0.10 1.05 3.94 -51.93 -0.20 0.85 16 9 N -0.69 -8.17 6.12 -107.37 -0.66 -8.82 16 10 C 0.06 0.80 5.46 -3.82 -0.02 0.78 16 11 C -0.12 -1.93 5.47 -26.73 -0.15 -2.07 16 12 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 13 C -0.01 -0.35 4.04 -27.88 -0.11 -0.46 16 14 C -0.52 -15.22 9.66 -34.44 -0.33 -15.55 16 15 H 0.07 2.21 7.99 -52.48 -0.42 1.79 16 16 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 17 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 18 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 22 C -0.11 -1.00 5.04 -27.44 -0.14 -1.14 16 23 C -0.10 -0.84 4.83 -25.62 -0.12 -0.97 16 24 H 0.05 0.35 8.06 -51.93 -0.42 -0.07 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.09 0.79 2.68 -51.93 -0.14 0.65 16 28 H 0.05 0.45 7.76 -51.93 -0.40 0.04 16 29 H 0.05 0.40 8.03 -51.93 -0.42 -0.01 16 30 H 0.06 0.49 6.98 -51.93 -0.36 0.13 16 31 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.68 4.83 -51.93 -0.25 0.43 16 34 H 0.06 0.53 7.47 -51.93 -0.39 0.15 16 35 H 0.06 0.60 7.22 -51.93 -0.38 0.22 16 36 H 0.34 3.82 8.49 -39.29 -0.33 3.49 16 37 H 0.03 0.36 7.33 -51.93 -0.38 -0.02 16 38 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 39 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 44 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.07 0.76 7.94 -51.93 -0.41 0.35 16 47 H 0.05 0.48 6.63 -51.93 -0.34 0.13 16 48 H 0.06 0.44 7.98 -51.93 -0.41 0.03 16 49 H 0.06 0.52 7.73 -51.93 -0.40 0.12 16 LS Contribution 352.14 15.07 5.31 5.31 Total: -1.00 -30.25 352.14 -9.88 -40.12 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -9.37 Total: -1.11 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -1.26 Total: -25.32 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.12 Total: -36.59 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.25 -9.88 -40.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697620499.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.588 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds