Wall clock time and date at job start Mon Mar 30 2020 08:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 108.77284 * 2 1 4 4 C 1.50475 * 108.87864 * 118.51176 * 2 1 3 5 5 C 1.54238 * 108.52563 * 214.92893 * 4 2 1 6 6 C 1.45542 * 112.40321 * 280.00896 * 5 4 2 7 7 C 1.54245 * 112.40282 * 61.94137 * 6 5 4 8 8 H 1.08991 * 109.63207 * 39.91327 * 7 6 5 9 9 N 1.46904 * 109.62527 * 160.30070 * 7 6 5 10 10 C 1.46904 * 110.99481 * 274.99600 * 9 7 6 11 11 C 1.53007 * 109.46819 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47145 * 179.97438 * 11 10 9 13 13 C 1.52999 * 109.46919 * 180.02562 * 12 11 10 14 14 C 1.50707 * 109.47007 * 180.02562 * 13 12 11 15 15 H 1.08008 * 119.99609 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00182 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00214 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99986 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47625 * 89.99325 * 18 16 14 20 20 H 1.48501 * 109.47242 * 210.00044 * 18 16 14 21 21 H 1.48510 * 109.47005 * 329.99607 * 18 16 14 22 22 C 1.50477 * 108.51847 * 280.00354 * 7 6 5 23 23 C 1.54063 * 112.49318 * 94.15613 * 22 7 6 24 24 H 1.08993 * 109.47337 * 301.48865 * 1 2 3 25 25 H 1.09007 * 109.46919 * 61.48731 * 1 2 3 26 26 H 1.09002 * 109.47220 * 181.48343 * 1 2 3 27 27 H 1.09002 * 109.47530 * 166.23930 * 3 2 1 28 28 H 1.09002 * 109.47381 * 286.24287 * 3 2 1 29 29 H 1.09005 * 109.47177 * 46.24605 * 3 2 1 30 30 H 1.09003 * 109.62964 * 95.21267 * 4 2 1 31 31 H 1.09002 * 109.78743 * 334.73554 * 4 2 1 32 32 H 1.09003 * 108.89562 * 159.25881 * 5 4 2 33 33 H 1.08993 * 108.82185 * 40.71443 * 5 4 2 34 34 H 1.08994 * 108.90005 * 301.18371 * 6 5 4 35 35 H 1.09002 * 108.81640 * 182.63916 * 6 5 4 36 36 H 1.00898 * 111.00067 * 38.94921 * 9 7 6 37 37 H 1.09001 * 109.47201 * 60.00889 * 10 9 7 38 38 H 1.08996 * 109.47694 * 299.99875 * 10 9 7 39 39 H 1.08996 * 109.47179 * 299.99970 * 11 10 9 40 40 H 1.09000 * 109.46901 * 59.99892 * 11 10 9 41 41 H 1.08996 * 109.47203 * 300.00133 * 12 11 10 42 42 H 1.09000 * 109.47164 * 60.00230 * 12 11 10 43 43 H 1.08996 * 109.47267 * 300.00064 * 13 12 11 44 44 H 1.08999 * 109.47497 * 60.00395 * 13 12 11 45 45 H 0.96997 * 120.00058 * 179.97438 * 17 16 14 46 46 H 1.08993 * 108.87627 * 214.93343 * 22 7 6 47 47 H 1.08994 * 108.87461 * 333.37785 * 22 7 6 48 48 H 1.09004 * 108.81376 * 197.42459 * 23 22 7 49 49 H 1.09001 * 108.72995 * 79.08132 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0223 1.4486 0.0000 4 6 2.0169 -0.6796 1.2511 5 6 3.3099 0.0200 1.7174 6 6 4.4788 -0.4189 0.9694 7 6 4.3714 -0.0917 -0.5341 8 1 3.9265 0.8948 -0.6634 9 7 5.7093 -0.1129 -1.1405 10 6 6.3837 1.1814 -0.9729 11 6 7.7706 1.1208 -1.6162 12 6 8.4728 2.4690 -1.4423 13 6 9.8594 2.4086 -2.0861 14 6 10.5513 3.7364 -1.9143 15 1 10.0520 4.5425 -1.3971 16 6 11.8219 3.9217 -2.4162 17 7 12.4255 5.0805 -2.2667 18 14 12.6857 2.5272 -3.3100 19 1 12.3712 2.5982 -4.7595 20 1 14.1529 2.6481 -3.1152 21 1 12.2196 1.2265 -2.7655 22 6 3.5033 -1.1320 -1.1888 23 6 2.0286 -0.6959 -1.2810 24 1 -0.3633 0.5367 0.8763 25 1 -0.3633 0.4906 -0.9031 26 1 -0.3634 -1.0273 0.0266 27 1 3.0844 1.4714 0.2444 28 1 1.8671 1.8851 -0.9866 29 1 1.4664 2.0213 0.7423 30 1 2.2236 -1.7291 1.0410 31 1 1.2586 -0.6049 2.0306 32 1 3.4662 -0.1951 2.7745 33 1 3.1930 1.0961 1.5901 34 1 4.5903 -1.4965 1.0891 35 1 5.3618 0.0743 1.3758 36 1 6.2668 -0.8630 -0.7602 37 1 6.4849 1.4035 0.0894 38 1 5.7948 1.9628 -1.4530 39 1 8.3598 0.3394 -1.1364 40 1 7.6690 0.8988 -2.6785 41 1 7.8834 3.2502 -1.9223 42 1 8.5744 2.6914 -0.3801 43 1 10.4490 1.6273 -1.6065 44 1 9.7575 2.1864 -3.1483 45 1 13.3196 5.2108 -2.6196 46 1 3.8783 -1.3222 -2.1944 47 1 3.5628 -2.0548 -0.6119 48 1 1.4125 -1.5760 -1.4653 49 1 1.9186 -0.0086 -2.1199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697620499.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:55:02 Heat of formation + Delta-G solvation = -36.223791 kcal Electronic energy + Delta-G solvation = -21057.265155 eV Core-core repulsion = 18210.656883 eV Total energy + Delta-G solvation = -2846.608272 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35274 -37.82942 -36.15623 -34.57361 -33.71711 -32.53433 -30.07193 -28.62393 -27.75047 -26.32461 -24.77645 -23.22418 -22.64496 -21.84682 -20.95933 -18.96838 -18.83177 -17.07980 -16.66204 -16.63523 -16.30736 -15.78301 -15.50684 -14.93215 -14.81005 -14.52659 -14.42904 -13.93093 -13.84242 -13.78569 -13.47688 -13.24250 -12.95352 -12.94342 -12.83646 -12.53825 -12.40450 -12.12656 -11.95351 -11.82285 -11.73582 -11.70813 -11.37556 -11.30589 -11.22408 -11.18939 -11.05095 -10.95076 -10.76445 -10.52112 -9.26208 -8.29815 -6.33923 1.35981 1.37663 1.50334 2.36524 3.05509 3.22928 3.69255 3.72614 3.92112 4.03759 4.12515 4.18508 4.25948 4.34046 4.37787 4.47688 4.48370 4.53287 4.64954 4.71791 4.75501 4.83070 4.84035 4.89188 4.92583 4.97281 5.03800 5.11966 5.14799 5.16554 5.18511 5.22455 5.23835 5.27327 5.31097 5.38151 5.40687 5.46379 5.53136 5.58438 5.62299 5.65581 5.66111 5.68783 6.21592 6.29527 6.55477 6.74335 7.30924 8.87229 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.039934 B = 0.002869 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.984375 B = 9756.514941 C = 9903.669183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.061 4.061 3 C -0.173 4.173 4 C -0.102 4.102 5 C -0.135 4.135 6 C -0.140 4.140 7 C 0.069 3.931 8 H 0.097 0.903 9 N -0.689 5.689 10 C 0.069 3.931 11 C -0.106 4.106 12 C -0.095 4.095 13 C -0.012 4.012 14 C -0.535 4.535 15 H 0.029 0.971 16 C 0.000 4.000 17 N -0.953 5.953 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.246 1.246 22 C -0.104 4.104 23 C -0.101 4.101 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.083 0.917 28 H 0.047 0.953 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.341 0.659 37 H 0.029 0.971 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.018 0.982 44 H 0.017 0.983 45 H 0.266 0.734 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.146 -16.199 6.090 30.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.061 4.061 3 C -0.230 4.230 4 C -0.139 4.139 5 C -0.173 4.173 6 C -0.179 4.179 7 C -0.040 4.040 8 H 0.114 0.886 9 N -0.319 5.319 10 C -0.061 4.061 11 C -0.144 4.144 12 C -0.133 4.133 13 C -0.050 4.050 14 C -0.573 4.573 15 H 0.048 0.952 16 C -0.196 4.196 17 N -0.594 5.594 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.170 1.170 22 C -0.142 4.142 23 C -0.139 4.139 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.159 0.841 37 H 0.047 0.953 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.037 0.963 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -25.231 -15.964 5.413 30.344 hybrid contribution 1.097 0.150 0.615 1.266 sum -24.134 -15.813 6.027 29.476 Atomic orbital electron populations 1.21981 0.94155 1.01908 1.01756 1.20237 0.95692 0.95226 0.94963 1.22797 1.02649 0.96038 1.01468 1.21365 0.96526 0.99516 0.96492 1.20730 0.94767 1.02376 0.99377 1.21145 0.98635 1.01703 0.96456 1.21889 0.89321 1.01467 0.91299 0.88568 1.60743 1.04277 1.05055 1.61803 1.21860 0.94291 0.91842 0.98060 1.21494 0.94913 0.96717 1.01311 1.21288 0.95590 0.96802 0.99622 1.19543 0.94523 0.94745 0.96158 1.21576 1.00797 0.98841 1.36088 0.95222 1.26084 0.98246 0.98511 0.96766 1.70077 1.15032 1.25968 1.48362 0.85596 0.77192 0.80214 0.79268 1.19119 1.20877 1.16956 1.21292 0.94108 0.97807 1.01028 1.21967 0.95044 1.00235 0.96694 0.92401 0.92931 0.92257 0.89859 0.93390 0.92447 0.91718 0.91268 0.92342 0.90257 0.91870 0.93433 0.84081 0.95317 0.91666 0.92088 0.91823 0.93541 0.93592 0.96317 0.96478 0.92498 0.91981 0.92176 0.91459 0.92703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.98 71.98 0.57 -1.06 16 2 C -0.06 -0.82 0.72 -52.64 -0.04 -0.86 16 3 C -0.17 -2.61 6.33 71.98 0.46 -2.16 16 4 C -0.10 -1.32 5.01 30.20 0.15 -1.16 16 5 C -0.14 -1.99 5.14 28.74 0.15 -1.85 16 6 C -0.14 -2.36 4.57 28.74 0.13 -2.23 16 7 C 0.07 1.29 2.08 44.52 0.09 1.38 16 8 H 0.10 1.91 3.94 -2.39 -0.01 1.91 16 9 N -0.69 -15.35 6.12 -493.60 -3.02 -18.37 16 10 C 0.07 1.78 5.46 86.30 0.47 2.25 16 11 C -0.11 -3.29 5.47 30.60 0.17 -3.13 16 12 C -0.09 -3.77 5.15 30.59 0.16 -3.61 16 13 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 14 C -0.54 -31.96 9.66 25.60 0.25 -31.71 16 15 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 16 C 0.00 0.01 5.47 84.65 0.46 0.48 16 17 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 18 Si 0.95 45.37 27.47 68.60 1.88 47.25 16 19 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 21 H -0.25 -10.85 6.54 99.48 0.65 -10.20 16 22 C -0.10 -1.75 5.04 30.14 0.15 -1.60 16 23 C -0.10 -1.48 4.83 31.32 0.15 -1.33 16 24 H 0.06 0.63 8.06 -2.39 -0.02 0.61 16 25 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.08 1.38 2.68 -2.39 -0.01 1.38 16 28 H 0.05 0.76 7.76 -2.39 -0.02 0.74 16 29 H 0.06 0.80 8.03 -2.38 -0.02 0.78 16 30 H 0.06 0.84 6.98 -2.39 -0.02 0.83 16 31 H 0.07 0.81 7.68 -2.39 -0.02 0.79 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 1.22 4.83 -2.39 -0.01 1.21 16 34 H 0.06 1.02 7.47 -2.39 -0.02 1.00 16 35 H 0.05 0.91 7.22 -2.39 -0.02 0.89 16 36 H 0.34 7.11 8.49 -89.70 -0.76 6.35 16 37 H 0.03 0.74 7.33 -2.39 -0.02 0.72 16 38 H 0.06 1.75 8.06 -2.39 -0.02 1.73 16 39 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 44 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 45 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 46 H 0.06 1.20 7.94 -2.39 -0.02 1.18 16 47 H 0.06 0.94 6.63 -2.39 -0.02 0.92 16 48 H 0.07 0.87 7.98 -2.38 -0.02 0.85 16 49 H 0.05 0.87 7.73 -2.39 -0.02 0.85 16 Total: -1.00 -65.01 352.14 2.68 -62.33 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.07 Total: 16.83 kcal Atomic # 6 Polarization: -50.49 SS G_CDS: 3.45 Total: -47.05 kcal Atomic # 7 Polarization: -76.64 SS G_CDS: -2.72 Total: -79.36 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.25 kcal Total: -65.01 2.68 -62.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697620499.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.105 kcal (2) G-P(sol) polarization free energy of solvation -65.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds