Wall clock time and date at job start Mon Mar 30 2020 08:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99868 * 2 1 4 4 C 1.52997 * 109.47252 * 66.04702 * 3 2 1 5 5 C 1.53003 * 109.47174 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47011 * 180.02562 * 5 4 3 7 7 H 1.08003 * 120.00115 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99789 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00109 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99865 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47428 * 89.99323 * 10 8 6 12 12 H 1.48502 * 109.47307 * 209.99575 * 10 8 6 13 13 H 1.48502 * 109.47167 * 329.99383 * 10 8 6 14 14 C 1.46900 * 111.00007 * 236.04684 * 2 1 3 15 15 H 1.08993 * 108.87234 * 180.35034 * 14 2 1 16 16 C 1.54243 * 108.81594 * 61.79340 * 14 2 1 17 17 C 1.50400 * 108.42479 * 159.33392 * 16 14 2 18 18 C 1.54072 * 112.53502 * 94.28475 * 17 16 14 19 19 C 1.54063 * 112.73645 * 318.11597 * 18 17 16 20 20 C 1.53001 * 108.87630 * 79.11176 * 19 18 17 21 21 C 1.52993 * 108.87897 * 197.55841 * 19 18 17 22 22 C 1.50478 * 112.49775 * 318.33977 * 19 18 17 23 23 C 1.45545 * 108.89240 * 298.95846 * 14 2 1 24 24 H 1.08996 * 109.47071 * 183.95318 * 1 2 3 25 25 H 1.09002 * 109.47126 * 303.95325 * 1 2 3 26 26 H 1.08996 * 109.47492 * 63.95039 * 1 2 3 27 27 H 1.09001 * 109.47154 * 186.04917 * 3 2 1 28 28 H 1.09004 * 109.47500 * 306.04781 * 3 2 1 29 29 H 1.09001 * 109.47216 * 300.00176 * 4 3 2 30 30 H 1.08998 * 109.46901 * 60.00093 * 4 3 2 31 31 H 1.08997 * 109.46944 * 300.00108 * 5 4 3 32 32 H 1.08998 * 109.46929 * 60.00356 * 5 4 3 33 33 H 0.96993 * 119.99744 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.63079 * 279.02210 * 16 14 2 35 35 H 1.09000 * 109.62988 * 39.60438 * 16 14 2 36 36 H 1.08996 * 108.94192 * 333.43627 * 17 16 14 37 37 H 1.09001 * 108.76599 * 215.01369 * 17 16 14 38 38 H 1.09002 * 108.80802 * 197.30870 * 18 17 16 39 39 H 1.09000 * 108.80891 * 78.92420 * 18 17 16 40 40 H 1.09006 * 109.46873 * 44.72522 * 20 19 18 41 41 H 1.08996 * 109.46878 * 164.72073 * 20 19 18 42 42 H 1.08996 * 109.47564 * 284.72807 * 20 19 18 43 43 H 1.09006 * 109.46705 * 60.00159 * 21 19 18 44 44 H 1.08993 * 109.47108 * 179.97438 * 21 19 18 45 45 H 1.08996 * 109.47076 * 300.00459 * 21 19 18 46 46 H 1.08995 * 109.62976 * 213.85705 * 22 19 18 47 47 H 1.08999 * 109.62602 * 334.44310 * 22 19 18 48 48 H 1.08995 * 108.89800 * 61.83812 * 23 14 2 49 49 H 1.09007 * 108.81335 * 303.28930 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1803 3.4857 1.3185 6 6 1.8223 4.1611 2.6172 7 1 1.2600 3.6252 3.3676 8 6 2.2127 5.4633 2.8474 9 7 2.8979 6.1157 1.9339 10 14 1.7696 6.3004 4.4575 11 1 2.8472 6.0635 5.4516 12 1 1.6172 7.7601 4.2311 13 1 0.4922 5.7430 4.9700 14 6 1.9955 -0.7660 -1.1376 15 1 3.0846 -0.7486 -1.1005 16 6 1.5295 -0.0962 -2.4466 17 6 2.4431 -0.5365 -3.5572 18 6 1.8952 -1.7551 -4.3244 19 6 1.2818 -2.8183 -3.3934 20 6 -0.1220 -2.3676 -2.9845 21 6 1.1718 -4.1401 -4.1560 22 6 2.1030 -3.0394 -2.1519 23 6 1.5419 -2.1446 -1.0278 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3633 0.5740 0.8525 26 1 -0.3634 0.4513 -0.9232 27 1 3.0797 1.3445 -0.1083 28 1 1.5611 1.9274 -0.8309 29 1 0.5472 2.0845 1.4265 30 1 2.0659 1.5016 2.1491 31 1 3.2646 3.4582 1.2104 32 1 1.7463 4.0418 0.4876 33 1 3.1722 7.0319 2.0958 34 1 0.5071 -0.4011 -2.6701 35 1 1.5764 0.9876 -2.3402 36 1 3.4148 -0.7932 -3.1353 37 1 2.5711 0.2911 -4.2549 38 1 2.7091 -2.2098 -4.8892 39 1 1.1301 -1.4158 -5.0227 40 1 -0.6542 -1.9969 -3.8606 41 1 -0.6652 -3.2117 -2.5596 42 1 -0.0467 -1.5731 -2.2421 43 1 2.1640 -4.4585 -4.4759 44 1 0.7390 -4.8999 -3.5055 45 1 0.5348 -4.0034 -5.0298 46 1 2.0402 -4.0856 -1.8528 47 1 3.1416 -2.7732 -2.3478 48 1 0.4530 -2.1626 -1.0726 49 1 1.8620 -2.5444 -0.0655 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697841959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:55:10 Heat of formation + Delta-G solvation = -1.481717 kcal Electronic energy + Delta-G solvation = -21775.370905 eV Core-core repulsion = 18930.269163 eV Total energy + Delta-G solvation = -2845.101743 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85331 -37.31232 -34.02917 -32.86734 -32.29295 -30.59027 -28.10486 -27.45901 -26.89615 -25.58810 -24.34165 -22.42663 -21.64808 -19.97862 -19.32170 -18.21427 -16.36916 -16.08543 -16.03292 -15.04330 -14.72711 -14.59069 -14.34353 -13.92521 -13.69513 -13.17756 -13.13360 -12.89177 -12.60121 -12.33499 -12.27681 -11.92852 -11.82612 -11.60135 -11.58855 -11.22580 -11.18907 -10.96073 -10.72996 -10.64031 -10.55588 -10.48251 -10.39133 -10.36951 -10.14825 -9.67304 -9.49189 -9.26013 -9.00130 -8.30172 -7.88173 -5.95719 -3.97464 3.34833 3.40686 3.44438 4.16441 4.50085 4.51922 4.55985 4.66231 4.84631 4.99238 5.13435 5.22326 5.24040 5.35808 5.40075 5.44115 5.46809 5.51210 5.55711 5.60997 5.67994 5.69906 5.78440 5.81386 5.85823 5.94174 5.97549 5.99067 6.02526 6.12043 6.16914 6.19870 6.22029 6.26759 6.32678 6.42776 6.46878 6.53845 6.78963 6.87500 7.19517 7.47863 7.51092 7.73799 7.89554 8.05433 8.49124 9.09934 9.66260 11.15801 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.045457 B = 0.003309 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.823030 B = 8460.364576 C = 8725.197205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.538 5.538 3 C 0.055 3.945 4 C -0.105 4.105 5 C 0.022 3.978 6 C -0.517 4.517 7 H 0.055 0.945 8 C 0.055 3.945 9 N -0.897 5.897 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.089 3.911 15 H 0.073 0.927 16 C -0.175 4.175 17 C -0.112 4.112 18 C -0.105 4.105 19 C -0.062 4.062 20 C -0.174 4.174 21 C -0.142 4.142 22 C -0.103 4.103 23 C -0.134 4.134 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.023 0.977 27 H 0.066 0.934 28 H 0.031 0.969 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.083 0.917 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.715 -19.501 -12.864 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.261 5.261 3 C -0.072 4.072 4 C -0.143 4.143 5 C -0.016 4.016 6 C -0.555 4.555 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.537 5.537 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.199 1.199 14 C -0.019 4.019 15 H 0.092 0.908 16 C -0.213 4.213 17 C -0.150 4.150 18 C -0.142 4.142 19 C -0.062 4.062 20 C -0.230 4.230 21 C -0.199 4.199 22 C -0.142 4.142 23 C -0.171 4.171 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.083 0.917 48 H 0.101 0.899 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.476 -19.558 -12.453 23.445 hybrid contribution -0.394 1.019 0.014 1.092 sum -3.870 -18.539 -12.439 22.659 Atomic orbital electron populations 1.22474 0.88544 1.01276 1.00914 1.62424 1.07434 1.15116 1.41093 1.22305 0.99396 0.86640 0.98858 1.21656 0.99955 0.98109 0.94568 1.19068 0.96183 0.89434 0.96868 1.21268 1.34646 0.97572 1.02063 0.92711 1.25031 0.95292 0.97522 0.96703 1.69968 1.38477 1.11275 1.33952 0.86607 0.78847 0.78602 0.84019 1.20673 1.21286 1.19894 1.20637 0.99795 0.93418 0.88087 0.90836 1.22469 1.01480 1.01232 0.96102 1.21201 0.99259 0.97046 0.97526 1.22013 0.99865 0.95043 0.97302 1.20234 0.95819 0.94767 0.95339 1.22839 0.95738 1.02292 1.02172 1.22005 1.01375 0.96551 1.00005 1.21347 0.99525 0.99237 0.94045 1.20873 1.02774 0.94572 0.98846 0.91995 0.90836 0.95807 0.91526 0.95080 0.93505 0.92746 0.96696 0.96906 0.93084 0.89637 0.91354 0.92172 0.92586 0.92472 0.92493 0.93318 0.93016 0.88708 0.92879 0.92747 0.93037 0.91867 0.91739 0.89903 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.22 60.07 0.49 0.71 16 2 N -0.54 -8.12 4.71 -238.38 -1.12 -9.24 16 3 C 0.06 0.98 4.39 -3.82 -0.02 0.97 16 4 C -0.10 -2.24 5.08 -26.73 -0.14 -2.38 16 5 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 6 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 7 H 0.05 1.55 7.74 -52.48 -0.41 1.14 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 10 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.09 1.11 1.71 -70.58 -0.12 0.99 16 15 H 0.07 0.99 7.36 -51.93 -0.38 0.60 16 16 C -0.17 -2.05 3.85 -27.38 -0.11 -2.16 16 17 C -0.11 -1.16 5.30 -27.47 -0.15 -1.31 16 18 C -0.10 -0.94 4.84 -25.62 -0.12 -1.06 16 19 C -0.06 -0.53 0.72 -155.22 -0.11 -0.64 16 20 C -0.17 -1.55 6.33 37.16 0.24 -1.31 16 21 C -0.14 -1.07 8.02 37.15 0.30 -0.77 16 22 C -0.10 -0.95 5.02 -27.34 -0.14 -1.08 16 23 C -0.13 -1.43 4.15 -29.60 -0.12 -1.55 16 24 H 0.06 0.73 6.32 -51.93 -0.33 0.40 16 25 H 0.07 1.10 6.30 -51.93 -0.33 0.77 16 26 H 0.02 0.31 6.80 -51.93 -0.35 -0.04 16 27 H 0.07 1.21 8.00 -51.93 -0.42 0.79 16 28 H 0.03 0.56 6.43 -51.93 -0.33 0.23 16 29 H 0.05 0.98 6.47 -51.93 -0.34 0.65 16 30 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.09 0.96 3.72 -51.93 -0.19 0.76 16 35 H 0.07 0.93 5.86 -51.93 -0.30 0.63 16 36 H 0.06 0.63 6.62 -51.93 -0.34 0.29 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.48 7.96 -51.93 -0.41 0.06 16 39 H 0.06 0.50 7.73 -51.93 -0.40 0.10 16 40 H 0.05 0.42 7.76 -51.93 -0.40 0.02 16 41 H 0.05 0.43 8.05 -51.93 -0.42 0.01 16 42 H 0.09 0.93 2.19 -51.93 -0.11 0.82 16 43 H 0.05 0.38 8.11 -51.93 -0.42 -0.04 16 44 H 0.05 0.39 8.01 -51.93 -0.42 -0.02 16 45 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.53 7.63 -51.93 -0.40 0.14 16 47 H 0.06 0.61 6.97 -51.93 -0.36 0.25 16 48 H 0.08 0.86 3.05 -51.93 -0.16 0.70 16 49 H 0.07 0.78 8.14 -51.92 -0.42 0.35 16 LS Contribution 342.25 15.07 5.16 5.16 Total: -1.00 -29.74 342.25 -9.69 -39.43 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -8.90 Total: -2.73 kcal Atomic # 6 Polarization: -22.39 SS G_CDS: -0.54 Total: -22.93 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.39 Total: -35.95 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.74 -9.69 -39.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697841959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.952 kcal (2) G-P(sol) polarization free energy of solvation -29.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds