Wall clock time and date at job start Mon Mar 30 2020 08:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46901 * 110.99868 * 2 1 4 4 C 1.52997 * 109.47252 * 66.04702 * 3 2 1 5 5 C 1.53003 * 109.47174 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47011 * 180.02562 * 5 4 3 7 7 H 1.08003 * 120.00115 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99789 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00109 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99865 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47428 * 89.99323 * 10 8 6 12 12 H 1.48502 * 109.47307 * 209.99575 * 10 8 6 13 13 H 1.48502 * 109.47167 * 329.99383 * 10 8 6 14 14 C 1.46900 * 111.00007 * 236.04684 * 2 1 3 15 15 H 1.08993 * 108.87234 * 180.35034 * 14 2 1 16 16 C 1.54243 * 108.81594 * 61.79340 * 14 2 1 17 17 C 1.50400 * 108.42479 * 159.33392 * 16 14 2 18 18 C 1.54072 * 112.53502 * 94.28475 * 17 16 14 19 19 C 1.54063 * 112.73645 * 318.11597 * 18 17 16 20 20 C 1.53001 * 108.87630 * 79.11176 * 19 18 17 21 21 C 1.52993 * 108.87897 * 197.55841 * 19 18 17 22 22 C 1.50478 * 112.49775 * 318.33977 * 19 18 17 23 23 C 1.45545 * 108.89240 * 298.95846 * 14 2 1 24 24 H 1.08996 * 109.47071 * 183.95318 * 1 2 3 25 25 H 1.09002 * 109.47126 * 303.95325 * 1 2 3 26 26 H 1.08996 * 109.47492 * 63.95039 * 1 2 3 27 27 H 1.09001 * 109.47154 * 186.04917 * 3 2 1 28 28 H 1.09004 * 109.47500 * 306.04781 * 3 2 1 29 29 H 1.09001 * 109.47216 * 300.00176 * 4 3 2 30 30 H 1.08998 * 109.46901 * 60.00093 * 4 3 2 31 31 H 1.08997 * 109.46944 * 300.00108 * 5 4 3 32 32 H 1.08998 * 109.46929 * 60.00356 * 5 4 3 33 33 H 0.96993 * 119.99744 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.63079 * 279.02210 * 16 14 2 35 35 H 1.09000 * 109.62988 * 39.60438 * 16 14 2 36 36 H 1.08996 * 108.94192 * 333.43627 * 17 16 14 37 37 H 1.09001 * 108.76599 * 215.01369 * 17 16 14 38 38 H 1.09002 * 108.80802 * 197.30870 * 18 17 16 39 39 H 1.09000 * 108.80891 * 78.92420 * 18 17 16 40 40 H 1.09006 * 109.46873 * 44.72522 * 20 19 18 41 41 H 1.08996 * 109.46878 * 164.72073 * 20 19 18 42 42 H 1.08996 * 109.47564 * 284.72807 * 20 19 18 43 43 H 1.09006 * 109.46705 * 60.00159 * 21 19 18 44 44 H 1.08993 * 109.47108 * 179.97438 * 21 19 18 45 45 H 1.08996 * 109.47076 * 300.00459 * 21 19 18 46 46 H 1.08995 * 109.62976 * 213.85705 * 22 19 18 47 47 H 1.08999 * 109.62602 * 334.44310 * 22 19 18 48 48 H 1.08995 * 108.89800 * 61.83812 * 23 14 2 49 49 H 1.09007 * 108.81335 * 303.28930 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6315 2.0575 1.3182 5 6 2.1803 3.4857 1.3185 6 6 1.8223 4.1611 2.6172 7 1 1.2600 3.6252 3.3676 8 6 2.2127 5.4633 2.8474 9 7 2.8979 6.1157 1.9339 10 14 1.7696 6.3004 4.4575 11 1 2.8472 6.0635 5.4516 12 1 1.6172 7.7601 4.2311 13 1 0.4922 5.7430 4.9700 14 6 1.9955 -0.7660 -1.1376 15 1 3.0846 -0.7486 -1.1005 16 6 1.5295 -0.0962 -2.4466 17 6 2.4431 -0.5365 -3.5572 18 6 1.8952 -1.7551 -4.3244 19 6 1.2818 -2.8183 -3.3934 20 6 -0.1220 -2.3676 -2.9845 21 6 1.1718 -4.1401 -4.1560 22 6 2.1030 -3.0394 -2.1519 23 6 1.5419 -2.1446 -1.0278 24 1 -0.3633 -1.0252 0.0708 25 1 -0.3633 0.5740 0.8525 26 1 -0.3634 0.4513 -0.9232 27 1 3.0797 1.3445 -0.1083 28 1 1.5611 1.9274 -0.8309 29 1 0.5472 2.0845 1.4265 30 1 2.0659 1.5016 2.1491 31 1 3.2646 3.4582 1.2104 32 1 1.7463 4.0418 0.4876 33 1 3.1722 7.0319 2.0958 34 1 0.5071 -0.4011 -2.6701 35 1 1.5764 0.9876 -2.3402 36 1 3.4148 -0.7932 -3.1353 37 1 2.5711 0.2911 -4.2549 38 1 2.7091 -2.2098 -4.8892 39 1 1.1301 -1.4158 -5.0227 40 1 -0.6542 -1.9969 -3.8606 41 1 -0.6652 -3.2117 -2.5596 42 1 -0.0467 -1.5731 -2.2421 43 1 2.1640 -4.4585 -4.4759 44 1 0.7390 -4.8999 -3.5055 45 1 0.5348 -4.0034 -5.0298 46 1 2.0402 -4.0856 -1.8528 47 1 3.1416 -2.7732 -2.3478 48 1 0.4530 -2.1626 -1.0726 49 1 1.8620 -2.5444 -0.0655 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697841959.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:55:09 Heat of formation + Delta-G solvation = -17.451923 kcal Electronic energy + Delta-G solvation = -21776.063425 eV Core-core repulsion = 18930.269163 eV Total energy + Delta-G solvation = -2845.794263 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.75497 -38.42966 -35.85604 -34.12302 -33.54631 -32.08657 -28.99355 -28.55215 -28.20011 -26.66779 -25.71771 -23.73041 -22.83038 -21.62346 -20.40761 -18.95006 -18.46767 -17.21663 -16.96080 -16.48312 -16.34647 -15.73872 -15.41117 -15.09819 -14.81073 -14.35773 -14.23624 -13.95579 -13.78536 -13.55265 -13.42248 -13.11550 -13.04463 -12.86484 -12.71730 -12.64711 -12.43625 -12.28001 -12.20192 -11.97298 -11.88285 -11.61410 -11.36110 -11.34767 -11.30409 -11.15432 -11.03141 -10.87873 -10.55562 -10.47894 -9.10729 -8.20497 -6.31713 1.39345 1.41160 1.52336 2.40625 3.01007 3.12381 3.67555 3.81961 3.91289 4.03406 4.10801 4.15160 4.26569 4.35118 4.41929 4.43295 4.56156 4.58620 4.65241 4.74825 4.76384 4.77995 4.82657 4.84792 4.93849 4.96665 5.02587 5.07775 5.09778 5.12937 5.15582 5.21728 5.24593 5.26055 5.32030 5.39317 5.43438 5.46618 5.52830 5.54631 5.64923 5.67033 5.74813 5.85621 6.16358 6.27222 6.31254 6.85093 7.37491 8.91571 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.045457 B = 0.003309 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.823030 B = 8460.364576 C = 8725.197205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.545 5.545 3 C 0.069 3.931 4 C -0.089 4.089 5 C 0.027 3.973 6 C -0.543 4.543 7 H 0.059 0.941 8 C -0.002 4.002 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.272 1.272 12 H -0.281 1.281 13 H -0.263 1.263 14 C 0.094 3.906 15 H 0.062 0.938 16 C -0.169 4.169 17 C -0.111 4.111 18 C -0.101 4.101 19 C -0.061 4.061 20 C -0.174 4.174 21 C -0.139 4.139 22 C -0.099 4.099 23 C -0.130 4.130 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.028 0.972 27 H 0.058 0.942 28 H 0.027 0.973 29 H 0.051 0.949 30 H 0.049 0.951 31 H -0.011 1.011 32 H -0.011 1.011 33 H 0.264 0.736 34 H 0.096 0.904 35 H 0.044 0.956 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.091 0.909 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 -21.035 -12.808 25.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.268 5.268 3 C -0.059 4.059 4 C -0.127 4.127 5 C -0.011 4.011 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.199 4.199 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.197 1.197 12 H -0.206 1.206 13 H -0.187 1.187 14 C -0.014 4.014 15 H 0.080 0.920 16 C -0.207 4.207 17 C -0.149 4.149 18 C -0.139 4.139 19 C -0.061 4.061 20 C -0.230 4.230 21 C -0.197 4.197 22 C -0.137 4.137 23 C -0.167 4.167 24 H 0.104 0.896 25 H 0.078 0.922 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.008 0.992 32 H 0.007 0.993 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.093 0.907 47 H 0.079 0.921 48 H 0.109 0.891 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.475 -21.115 -12.404 24.894 hybrid contribution -0.065 1.490 -0.039 1.492 sum -4.540 -19.624 -12.443 23.676 Atomic orbital electron populations 1.22505 0.87456 1.02622 1.00528 1.62375 1.08475 1.13137 1.42795 1.21991 0.99006 0.88296 0.96618 1.21404 0.99740 0.95201 0.96373 1.18958 0.94505 0.92249 0.95345 1.21694 1.35009 0.98367 1.03012 0.92304 1.26007 0.94926 0.98272 1.00717 1.70101 1.39357 1.11784 1.36221 0.85431 0.79063 0.77402 0.79061 1.19719 1.20601 1.18703 1.20672 0.99066 0.94205 0.87478 0.92013 1.22407 1.02487 0.99572 0.96232 1.21180 0.98817 0.97843 0.97108 1.21993 1.00240 0.94430 0.97236 1.20229 0.95468 0.95302 0.95089 1.22803 0.95995 1.02186 1.01993 1.21971 1.01811 0.95810 1.00066 1.21323 0.99285 0.99421 0.93654 1.20839 1.03290 0.93337 0.99220 0.89599 0.92208 0.95329 0.92297 0.95479 0.93073 0.93242 0.99247 0.99265 0.92752 0.88636 0.93714 0.92543 0.92788 0.91647 0.92162 0.93048 0.92220 0.89834 0.92470 0.92210 0.92664 0.90670 0.92112 0.89116 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 8.22 127.69 1.05 1.49 16 2 N -0.55 -16.30 4.71 -908.11 -4.28 -20.58 16 3 C 0.07 2.52 4.39 86.30 0.38 2.90 16 4 C -0.09 -3.90 5.08 30.59 0.16 -3.75 16 5 C 0.03 1.49 4.97 29.85 0.15 1.64 16 6 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 7 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 8 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 9 N -0.93 -58.19 13.29 21.45 0.28 -57.91 16 10 Si 0.97 45.22 29.54 68.60 2.03 47.24 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 13 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 14 C 0.09 2.29 1.71 43.06 0.07 2.37 16 15 H 0.06 1.66 7.36 -2.39 -0.02 1.64 16 16 C -0.17 -3.89 3.85 30.17 0.12 -3.77 16 17 C -0.11 -2.22 5.30 30.12 0.16 -2.06 16 18 C -0.10 -1.62 4.84 31.32 0.15 -1.47 16 19 C -0.06 -0.90 0.72 -52.64 -0.04 -0.94 16 20 C -0.17 -2.65 6.33 71.98 0.46 -2.20 16 21 C -0.14 -1.71 8.02 71.98 0.58 -1.13 16 22 C -0.10 -1.60 5.02 30.20 0.15 -1.45 16 23 C -0.13 -2.58 4.15 28.74 0.12 -2.46 16 24 H 0.09 1.85 6.32 -2.39 -0.02 1.84 16 25 H 0.06 1.74 6.30 -2.39 -0.02 1.73 16 26 H 0.03 0.72 6.80 -2.39 -0.02 0.71 16 27 H 0.06 2.22 8.00 -2.39 -0.02 2.20 16 28 H 0.03 1.01 6.43 -2.39 -0.02 1.00 16 29 H 0.05 2.17 6.47 -2.39 -0.02 2.16 16 30 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 31 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 34 H 0.10 2.02 3.72 -2.38 -0.01 2.01 16 35 H 0.04 1.24 5.86 -2.39 -0.01 1.23 16 36 H 0.06 1.16 6.62 -2.39 -0.02 1.14 16 37 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.06 0.95 7.96 -2.39 -0.02 0.93 16 39 H 0.06 0.94 7.73 -2.39 -0.02 0.92 16 40 H 0.05 0.76 7.76 -2.38 -0.02 0.74 16 41 H 0.06 0.82 8.05 -2.39 -0.02 0.80 16 42 H 0.08 1.46 2.19 -2.39 -0.01 1.45 16 43 H 0.06 0.66 8.11 -2.38 -0.02 0.64 16 44 H 0.06 0.68 8.01 -2.39 -0.02 0.66 16 45 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.07 1.07 7.63 -2.39 -0.02 1.05 16 47 H 0.06 1.05 6.97 -2.39 -0.02 1.03 16 48 H 0.09 1.68 3.05 -2.39 -0.01 1.67 16 49 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -64.01 342.25 3.13 -60.88 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.90 Total: 12.59 kcal Atomic # 6 Polarization: -46.43 SS G_CDS: 4.19 Total: -42.23 kcal Atomic # 7 Polarization: -74.49 SS G_CDS: -3.99 Total: -78.49 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.24 kcal Total: -64.01 3.13 -60.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697841959.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.433 kcal (2) G-P(sol) polarization free energy of solvation -64.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds