Wall clock time and date at job start Mon Mar 30 2020 06:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47012 * 2 1 4 4 C 1.37095 * 120.00110 * 96.42925 * 3 2 1 5 5 H 1.08005 * 120.00321 * 169.09325 * 4 3 2 6 6 C 1.38954 * 120.00216 * 349.09226 * 4 3 2 7 7 N 1.31423 * 119.99531 * 338.14538 * 6 4 3 8 8 Si 1.86792 * 120.00285 * 158.14659 * 6 4 3 9 9 H 1.48501 * 109.46941 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.47074 * 299.99956 * 8 6 4 11 11 H 1.48500 * 109.47340 * 59.99805 * 8 6 4 12 12 C 1.34777 * 120.00254 * 276.42601 * 3 2 1 13 13 O 1.21297 * 119.99875 * 355.83037 * 12 3 2 14 14 C 1.50700 * 120.00206 * 175.82332 * 12 3 2 15 15 C 1.52991 * 110.01818 * 298.03309 * 14 12 3 16 16 C 1.54268 * 110.02902 * 59.42903 * 14 12 3 17 17 C 1.54886 * 104.19895 * 95.67131 * 16 14 12 18 18 C 1.54897 * 102.74757 * 37.94116 * 17 16 14 19 19 H 1.08999 * 110.48142 * 80.73654 * 18 17 16 20 20 C 1.52992 * 110.48357 * 203.24532 * 18 17 16 21 21 C 1.53874 * 110.03210 * 176.58878 * 14 12 3 22 22 C 1.53003 * 110.03260 * 0.02562 * 21 14 12 23 23 C 1.52998 * 110.03399 * 121.43164 * 21 14 12 24 24 H 1.09003 * 109.47163 * 309.61121 * 1 2 3 25 25 H 1.08997 * 109.47184 * 69.60531 * 1 2 3 26 26 H 1.08996 * 109.47056 * 189.60965 * 1 2 3 27 27 H 1.08997 * 109.47146 * 240.00343 * 2 1 3 28 28 H 1.09000 * 109.47159 * 119.99623 * 2 1 3 29 29 H 0.96997 * 119.99650 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47348 * 60.29908 * 15 14 12 31 31 H 1.09003 * 109.46915 * 180.29979 * 15 14 12 32 32 H 1.08997 * 109.47677 * 300.29663 * 15 14 12 33 33 H 1.09000 * 110.48206 * 214.34972 * 16 14 12 34 34 H 1.08998 * 110.48517 * 336.99256 * 16 14 12 35 35 H 1.08999 * 110.75420 * 156.25096 * 17 16 14 36 36 H 1.08995 * 110.75763 * 279.62989 * 17 16 14 37 37 H 1.08997 * 109.47665 * 58.54811 * 20 18 17 38 38 H 1.09001 * 109.47011 * 178.54579 * 20 18 17 39 39 H 1.09001 * 109.47749 * 298.54483 * 20 18 17 40 40 H 1.09006 * 109.47009 * 61.77776 * 22 21 14 41 41 H 1.09004 * 109.47321 * 181.77261 * 22 21 14 42 42 H 1.08997 * 109.47489 * 301.77557 * 22 21 14 43 43 H 1.09002 * 109.46893 * 60.00003 * 23 21 14 44 44 H 1.08999 * 109.47482 * 179.97438 * 23 21 14 45 45 H 1.09001 * 109.47303 * 300.00276 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3721 1.9832 1.1798 5 1 2.8940 2.9288 1.1684 6 6 2.0594 1.3769 2.3903 7 7 1.0886 0.4932 2.4511 8 14 3.0188 1.8179 3.9312 9 1 2.4944 1.0380 5.0810 10 1 4.4546 1.4965 3.7293 11 1 2.8707 3.2693 4.2082 12 6 2.1198 2.0602 -1.1598 13 8 1.8793 1.5045 -2.2109 14 6 2.5318 3.5097 -1.1509 15 6 1.5058 4.3411 -0.3784 16 6 3.9257 3.6588 -0.5069 17 6 4.9010 3.6692 -1.7100 18 6 4.1210 4.4791 -2.7753 19 1 4.2190 5.5485 -2.5886 20 6 4.6187 4.1343 -4.1804 21 6 2.6561 4.0313 -2.5932 22 6 2.3218 2.9150 -3.5848 23 6 1.7149 5.2189 -2.8040 24 1 -0.3634 0.6552 0.7917 25 1 -0.3633 0.3581 -0.9632 26 1 -0.3633 -1.0132 0.1715 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.8705 0.0697 3.2960 30 1 1.4479 3.9832 0.6495 31 1 1.8096 5.3879 -0.3821 32 1 0.5290 4.2447 -0.8523 33 1 3.9921 4.5958 0.0461 34 1 4.1361 2.8128 0.1474 35 1 5.8321 4.1717 -1.4482 36 1 5.0932 2.6551 -2.0602 37 1 4.4959 3.0659 -4.3574 38 1 4.0421 4.6933 -4.9174 39 1 5.6727 4.3982 -4.2675 40 1 1.2910 2.5932 -3.4356 41 1 2.4431 3.2851 -4.6029 42 1 2.9928 2.0717 -3.4224 43 1 1.9770 6.0178 -2.1103 44 1 1.8105 5.5812 -3.8276 45 1 0.6869 4.9043 -2.6241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699007816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:55 Heat of formation + Delta-G solvation = 7.293077 kcal Electronic energy + Delta-G solvation = -23320.137598 eV Core-core repulsion = 20339.583265 eV Total energy + Delta-G solvation = -2980.554334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.51588 -37.33932 -35.20110 -32.69719 -31.83993 -31.31257 -29.36832 -27.41672 -26.69784 -25.06344 -23.44843 -23.15610 -22.02562 -20.36267 -18.80133 -17.87592 -16.69507 -15.48614 -15.22844 -14.42464 -14.25864 -14.01045 -13.69873 -13.31258 -13.19780 -12.80019 -12.75902 -12.58216 -12.31086 -11.98678 -11.92687 -11.34623 -11.31045 -11.16006 -11.00095 -10.95845 -10.72704 -10.68661 -10.47808 -10.36721 -10.14295 -9.99497 -9.87381 -9.75641 -9.51376 -9.42905 -9.29938 -8.76913 -7.66254 -7.23424 -6.33800 -3.81154 3.10391 3.20101 3.21713 3.94814 4.08926 4.81782 4.99642 5.07514 5.17177 5.32043 5.71364 5.76680 5.83029 5.88078 5.95719 5.98505 6.03479 6.12125 6.21435 6.26336 6.32975 6.40375 6.43346 6.47280 6.56816 6.60921 6.63629 6.68246 6.78871 6.84909 6.87905 6.89296 6.95326 6.98948 7.11056 7.15314 7.26246 7.39022 7.45595 7.59179 7.78583 7.87096 8.49094 9.13179 9.64034 10.05867 10.63744 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022551 B = 0.008023 C = 0.006918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.325346 B = 3489.308925 C = 4046.714407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.135 3.865 3 N -0.438 5.438 4 C -0.340 4.340 5 H 0.116 0.884 6 C 0.034 3.966 7 N -0.857 5.857 8 Si 0.909 3.091 9 H -0.285 1.285 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.458 3.542 13 O -0.593 6.593 14 C -0.051 4.051 15 C -0.141 4.141 16 C -0.124 4.124 17 C -0.119 4.119 18 C -0.086 4.086 19 H 0.065 0.935 20 C -0.141 4.141 21 C -0.049 4.049 22 C -0.096 4.096 23 C -0.135 4.135 24 H 0.080 0.920 25 H 0.022 0.978 26 H 0.033 0.967 27 H 0.034 0.966 28 H 0.092 0.908 29 H 0.266 0.734 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.042 0.958 40 H 0.070 0.930 41 H -0.005 1.005 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.043 0.957 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.839 6.250 -4.370 8.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 N -0.155 5.155 4 C -0.467 4.467 5 H 0.133 0.867 6 C -0.171 4.171 7 N -0.495 5.495 8 Si 0.735 3.265 9 H -0.210 1.210 10 H -0.200 1.200 11 H -0.199 1.199 12 C 0.248 3.752 13 O -0.482 6.482 14 C -0.054 4.054 15 C -0.198 4.198 16 C -0.161 4.161 17 C -0.157 4.157 18 C -0.105 4.105 19 H 0.083 0.917 20 C -0.198 4.198 21 C -0.049 4.049 22 C -0.153 4.153 23 C -0.192 4.192 24 H 0.099 0.901 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.013 0.987 42 H 0.092 0.908 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.603 5.811 -4.678 8.285 hybrid contribution 0.322 0.222 1.070 1.139 sum 3.925 6.033 -3.608 8.051 Atomic orbital electron populations 1.21882 0.96989 1.00302 0.99989 1.21135 0.94183 0.83536 0.99921 1.43948 1.54914 1.11074 1.05561 1.20081 1.35930 1.07884 0.82841 0.86701 1.25217 0.95629 0.97154 0.99053 1.70181 1.24657 1.28070 1.26622 0.86281 0.80330 0.78686 0.81171 1.21018 1.19955 1.19873 1.20094 0.83243 0.88415 0.83491 1.90712 1.57513 1.71202 1.28740 1.20920 0.95925 0.93890 0.94663 1.22044 0.97629 0.97898 1.02279 1.22739 0.93125 1.02796 0.97465 1.22553 0.97397 0.99899 0.95812 1.22018 0.94967 0.98777 0.94728 0.91686 1.21852 0.99296 1.02202 0.96438 1.21112 0.93608 0.95568 0.94627 1.22339 1.04587 0.95612 0.92713 1.21981 0.99668 0.97509 1.00037 0.90090 0.95913 0.94826 0.94790 0.89041 0.92296 0.89883 0.93310 0.93356 0.92002 0.88614 0.92475 0.91743 0.91888 0.93283 0.93850 0.91174 0.98651 0.90836 0.93006 0.93788 0.92652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 9.47 37.16 0.35 -2.75 16 2 C 0.14 3.28 5.27 -4.04 -0.02 3.26 16 3 N -0.44 -10.61 2.64 -114.81 -0.30 -10.92 16 4 C -0.34 -8.09 6.44 -14.93 -0.10 -8.19 16 5 H 0.12 2.58 3.72 -52.48 -0.20 2.38 16 6 C 0.03 0.82 4.95 -17.46 -0.09 0.73 16 7 N -0.86 -21.21 8.59 55.50 0.48 -20.73 16 8 Si 0.91 18.81 29.61 -169.99 -5.03 13.78 16 9 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 12 C 0.46 10.61 6.25 -10.99 -0.07 10.55 16 13 O -0.59 -14.70 10.08 5.54 0.06 -14.64 16 14 C -0.05 -0.99 0.61 -154.55 -0.09 -1.08 16 15 C -0.14 -2.63 6.92 37.15 0.26 -2.38 16 16 C -0.12 -2.22 4.45 -25.07 -0.11 -2.34 16 17 C -0.12 -1.92 6.33 -24.74 -0.16 -2.07 16 18 C -0.09 -1.33 2.90 -88.96 -0.26 -1.59 16 19 H 0.06 0.93 7.84 -51.93 -0.41 0.52 16 20 C -0.14 -1.98 8.01 37.15 0.30 -1.68 16 21 C -0.05 -0.85 0.86 -153.39 -0.13 -0.98 16 22 C -0.10 -1.87 5.37 37.16 0.20 -1.67 16 23 C -0.13 -2.09 7.20 37.16 0.27 -1.82 16 24 H 0.08 2.03 6.63 -51.93 -0.34 1.69 16 25 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.03 0.83 7.57 -51.93 -0.39 0.43 16 28 H 0.09 2.30 5.90 -51.93 -0.31 2.00 16 29 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 30 H 0.08 1.70 5.51 -51.93 -0.29 1.42 16 31 H 0.05 0.78 6.63 -51.93 -0.34 0.44 16 32 H 0.05 0.91 6.85 -51.93 -0.36 0.56 16 33 H 0.06 1.01 7.85 -51.93 -0.41 0.61 16 34 H 0.10 1.92 5.46 -51.93 -0.28 1.64 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.12 8.06 -51.93 -0.42 0.70 16 37 H 0.06 0.96 6.39 -51.93 -0.33 0.63 16 38 H 0.05 0.65 7.86 -51.93 -0.41 0.24 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 1.54 6.34 -51.57 -0.33 1.21 16 41 H 0.00 -0.09 6.79 -51.93 -0.35 -0.44 16 42 H 0.07 1.58 5.74 -51.59 -0.30 1.29 16 43 H 0.05 0.74 6.67 -51.93 -0.35 0.39 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.05 0.90 6.79 -51.93 -0.35 0.54 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -25.37 314.88 -7.11 -32.49 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -7.40 Total: 7.28 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 0.35 Total: -12.01 kcal Atomic # 7 Polarization: -31.82 SS G_CDS: 0.17 Total: -31.65 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: 0.06 Total: -14.64 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -25.37 -7.11 -32.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699007816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.782 kcal (2) G-P(sol) polarization free energy of solvation -25.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds