Wall clock time and date at job start Mon Mar 30 2020 06:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47012 * 2 1 4 4 C 1.37095 * 120.00110 * 96.42925 * 3 2 1 5 5 H 1.08005 * 120.00321 * 169.09325 * 4 3 2 6 6 C 1.38954 * 120.00216 * 349.09226 * 4 3 2 7 7 N 1.31423 * 119.99531 * 338.14538 * 6 4 3 8 8 Si 1.86792 * 120.00285 * 158.14659 * 6 4 3 9 9 H 1.48501 * 109.46941 * 180.02562 * 8 6 4 10 10 H 1.48507 * 109.47074 * 299.99956 * 8 6 4 11 11 H 1.48500 * 109.47340 * 59.99805 * 8 6 4 12 12 C 1.34777 * 120.00254 * 276.42601 * 3 2 1 13 13 O 1.21297 * 119.99875 * 355.83037 * 12 3 2 14 14 C 1.50700 * 120.00206 * 175.82332 * 12 3 2 15 15 C 1.52991 * 110.01818 * 298.03309 * 14 12 3 16 16 C 1.54268 * 110.02902 * 59.42903 * 14 12 3 17 17 C 1.54886 * 104.19895 * 95.67131 * 16 14 12 18 18 C 1.54897 * 102.74757 * 37.94116 * 17 16 14 19 19 H 1.08999 * 110.48142 * 80.73654 * 18 17 16 20 20 C 1.52992 * 110.48357 * 203.24532 * 18 17 16 21 21 C 1.53874 * 110.03210 * 176.58878 * 14 12 3 22 22 C 1.53003 * 110.03260 * 0.02562 * 21 14 12 23 23 C 1.52998 * 110.03399 * 121.43164 * 21 14 12 24 24 H 1.09003 * 109.47163 * 309.61121 * 1 2 3 25 25 H 1.08997 * 109.47184 * 69.60531 * 1 2 3 26 26 H 1.08996 * 109.47056 * 189.60965 * 1 2 3 27 27 H 1.08997 * 109.47146 * 240.00343 * 2 1 3 28 28 H 1.09000 * 109.47159 * 119.99623 * 2 1 3 29 29 H 0.96997 * 119.99650 * 179.97438 * 7 6 4 30 30 H 1.08999 * 109.47348 * 60.29908 * 15 14 12 31 31 H 1.09003 * 109.46915 * 180.29979 * 15 14 12 32 32 H 1.08997 * 109.47677 * 300.29663 * 15 14 12 33 33 H 1.09000 * 110.48206 * 214.34972 * 16 14 12 34 34 H 1.08998 * 110.48517 * 336.99256 * 16 14 12 35 35 H 1.08999 * 110.75420 * 156.25096 * 17 16 14 36 36 H 1.08995 * 110.75763 * 279.62989 * 17 16 14 37 37 H 1.08997 * 109.47665 * 58.54811 * 20 18 17 38 38 H 1.09001 * 109.47011 * 178.54579 * 20 18 17 39 39 H 1.09001 * 109.47749 * 298.54483 * 20 18 17 40 40 H 1.09006 * 109.47009 * 61.77776 * 22 21 14 41 41 H 1.09004 * 109.47321 * 181.77261 * 22 21 14 42 42 H 1.08997 * 109.47489 * 301.77557 * 22 21 14 43 43 H 1.09002 * 109.46893 * 60.00003 * 23 21 14 44 44 H 1.08999 * 109.47482 * 179.97438 * 23 21 14 45 45 H 1.09001 * 109.47303 * 300.00276 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3721 1.9832 1.1798 5 1 2.8940 2.9288 1.1684 6 6 2.0594 1.3769 2.3903 7 7 1.0886 0.4932 2.4511 8 14 3.0188 1.8179 3.9312 9 1 2.4944 1.0380 5.0810 10 1 4.4546 1.4965 3.7293 11 1 2.8707 3.2693 4.2082 12 6 2.1198 2.0602 -1.1598 13 8 1.8793 1.5045 -2.2109 14 6 2.5318 3.5097 -1.1509 15 6 1.5058 4.3411 -0.3784 16 6 3.9257 3.6588 -0.5069 17 6 4.9010 3.6692 -1.7100 18 6 4.1210 4.4791 -2.7753 19 1 4.2190 5.5485 -2.5886 20 6 4.6187 4.1343 -4.1804 21 6 2.6561 4.0313 -2.5932 22 6 2.3218 2.9150 -3.5848 23 6 1.7149 5.2189 -2.8040 24 1 -0.3634 0.6552 0.7917 25 1 -0.3633 0.3581 -0.9632 26 1 -0.3633 -1.0132 0.1715 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.8705 0.0697 3.2960 30 1 1.4479 3.9832 0.6495 31 1 1.8096 5.3879 -0.3821 32 1 0.5290 4.2447 -0.8523 33 1 3.9921 4.5958 0.0461 34 1 4.1361 2.8128 0.1474 35 1 5.8321 4.1717 -1.4482 36 1 5.0932 2.6551 -2.0602 37 1 4.4959 3.0659 -4.3574 38 1 4.0421 4.6933 -4.9174 39 1 5.6727 4.3982 -4.2675 40 1 1.2910 2.5932 -3.4356 41 1 2.4431 3.2851 -4.6029 42 1 2.9928 2.0717 -3.4224 43 1 1.9770 6.0178 -2.1103 44 1 1.8105 5.5812 -3.8276 45 1 0.6869 4.9043 -2.6241 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699007816.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:54 Heat of formation + Delta-G solvation = -4.214378 kcal Electronic energy + Delta-G solvation = -23320.636599 eV Core-core repulsion = 20339.583265 eV Total energy + Delta-G solvation = -2981.053334 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.08272 -39.00515 -37.04362 -34.19858 -33.42285 -32.92247 -31.17261 -28.78943 -28.11782 -26.88399 -25.05029 -24.47818 -23.75615 -21.92074 -20.52723 -19.43691 -18.34773 -17.20716 -16.71714 -16.15866 -15.90830 -15.64975 -15.23607 -14.85432 -14.65133 -14.29773 -14.20815 -14.11683 -13.95777 -13.73147 -13.25427 -13.09256 -12.85417 -12.74999 -12.55251 -12.48689 -12.30202 -12.12665 -12.08610 -11.91570 -11.68399 -11.50306 -11.40375 -11.20177 -11.01965 -10.92954 -10.84577 -10.59570 -9.54876 -9.03286 -8.16483 -5.68528 1.45541 1.52085 1.58287 2.16318 2.35999 3.11049 3.21963 3.70260 3.78916 3.96813 4.33205 4.43658 4.47174 4.54400 4.57712 4.65156 4.68643 4.72300 4.78253 4.85172 4.92257 4.93435 4.96948 5.03329 5.06530 5.12110 5.15479 5.20641 5.26567 5.29315 5.34848 5.42107 5.43359 5.47313 5.54406 5.56191 5.63654 5.67496 5.79098 5.81959 5.93184 6.09310 6.61777 7.28002 7.79681 8.21808 8.81755 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022551 B = 0.008023 C = 0.006918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.325346 B = 3489.308925 C = 4046.714407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.137 3.863 3 N -0.452 5.452 4 C -0.348 4.348 5 H 0.129 0.871 6 C -0.008 4.008 7 N -0.884 5.884 8 Si 0.971 3.029 9 H -0.290 1.290 10 H -0.273 1.273 11 H -0.263 1.263 12 C 0.445 3.555 13 O -0.617 6.617 14 C -0.053 4.053 15 C -0.133 4.133 16 C -0.123 4.123 17 C -0.115 4.115 18 C -0.080 4.080 19 H 0.091 0.909 20 C -0.139 4.139 21 C -0.052 4.052 22 C -0.080 4.080 23 C -0.131 4.131 24 H 0.062 0.938 25 H 0.012 0.988 26 H 0.050 0.950 27 H 0.023 0.977 28 H 0.081 0.919 29 H 0.265 0.735 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.036 0.964 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.035 0.965 41 H 0.015 0.985 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.313 8.966 -4.382 11.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.014 3.986 3 N -0.169 5.169 4 C -0.475 4.475 5 H 0.146 0.854 6 C -0.210 4.210 7 N -0.522 5.522 8 Si 0.796 3.204 9 H -0.215 1.215 10 H -0.198 1.198 11 H -0.188 1.188 12 C 0.236 3.764 13 O -0.507 6.507 14 C -0.055 4.055 15 C -0.191 4.191 16 C -0.160 4.160 17 C -0.153 4.153 18 C -0.098 4.098 19 H 0.109 0.891 20 C -0.196 4.196 21 C -0.053 4.053 22 C -0.137 4.137 23 C -0.188 4.188 24 H 0.081 0.919 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.099 0.901 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.101 0.899 32 H 0.055 0.945 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.054 0.946 41 H 0.033 0.967 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.080 8.539 -4.698 10.991 hybrid contribution -0.169 -0.692 0.995 1.224 sum 4.911 7.847 -3.703 9.970 Atomic orbital electron populations 1.21687 0.96346 1.00804 0.98536 1.21031 0.94645 0.84213 0.98721 1.44171 1.55391 1.11003 1.06372 1.20436 1.35853 1.08458 0.82722 0.85362 1.25972 0.96171 0.97325 1.01546 1.70279 1.25710 1.29163 1.27097 0.85304 0.78747 0.78738 0.77580 1.21548 1.19846 1.18770 1.20988 0.82485 0.90151 0.82765 1.90733 1.58180 1.72271 1.29467 1.21007 0.96952 0.91018 0.96568 1.21981 0.96998 0.99588 1.00492 1.22699 0.92521 1.02820 0.97966 1.22531 0.98307 0.99282 0.95170 1.22022 0.92696 0.99916 0.95159 0.89074 1.21815 1.00881 1.01027 0.95852 1.21172 0.96088 0.95542 0.92449 1.22006 1.01557 0.95571 0.94545 1.21941 0.98195 0.96923 1.01748 0.91886 0.96882 0.93128 0.95858 0.90065 0.92487 0.92039 0.89916 0.94529 0.89608 0.91192 0.89645 0.94021 0.93967 0.92202 0.91722 0.94646 0.96672 0.93755 0.90968 0.92036 0.94108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.56 9.47 71.98 0.68 -4.87 16 2 C 0.14 6.93 5.27 86.38 0.46 7.39 16 3 N -0.45 -22.54 2.64 -635.53 -1.67 -24.22 16 4 C -0.35 -16.68 6.44 84.04 0.54 -16.14 16 5 H 0.13 5.69 3.72 -2.91 -0.01 5.68 16 6 C -0.01 -0.40 4.95 84.93 0.42 0.02 16 7 N -0.88 -44.52 8.59 21.67 0.19 -44.34 16 8 Si 0.97 38.35 29.61 68.60 2.03 40.38 16 9 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 10 H -0.27 -10.66 7.11 99.48 0.71 -9.96 16 11 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 12 C 0.44 21.15 6.25 87.66 0.55 21.69 16 13 O -0.62 -31.87 10.08 -3.08 -0.03 -31.90 16 14 C -0.05 -1.98 0.61 -52.21 -0.03 -2.02 16 15 C -0.13 -4.78 6.92 71.98 0.50 -4.28 16 16 C -0.12 -4.16 4.45 31.67 0.14 -4.02 16 17 C -0.12 -3.42 6.33 31.89 0.20 -3.22 16 18 C -0.08 -2.17 2.90 -9.72 -0.03 -2.19 16 19 H 0.09 2.08 7.84 -2.39 -0.02 2.07 16 20 C -0.14 -3.46 8.01 71.98 0.58 -2.88 16 21 C -0.05 -1.72 0.86 -51.46 -0.04 -1.76 16 22 C -0.08 -3.12 5.37 71.98 0.39 -2.73 16 23 C -0.13 -3.66 7.20 71.98 0.52 -3.14 16 24 H 0.06 3.26 6.63 -2.39 -0.02 3.25 16 25 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.02 1.19 7.57 -2.39 -0.02 1.17 16 28 H 0.08 4.25 5.90 -2.39 -0.01 4.23 16 29 H 0.27 12.86 8.31 -92.71 -0.77 12.09 16 30 H 0.06 2.47 5.51 -2.39 -0.01 2.46 16 31 H 0.08 2.37 6.63 -2.39 -0.02 2.35 16 32 H 0.04 1.36 6.85 -2.39 -0.02 1.35 16 33 H 0.09 2.49 7.85 -2.39 -0.02 2.48 16 34 H 0.07 2.76 5.46 -2.39 -0.01 2.74 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.41 8.06 -2.39 -0.02 1.39 16 37 H 0.04 1.22 6.39 -2.39 -0.02 1.20 16 38 H 0.06 1.36 7.86 -2.39 -0.02 1.34 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.03 1.59 6.34 -15.70 -0.10 1.49 16 41 H 0.01 0.51 6.79 -2.39 -0.02 0.50 16 42 H 0.04 1.96 5.74 -15.93 -0.09 1.87 16 43 H 0.07 1.72 6.67 -2.39 -0.02 1.71 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.04 1.25 6.79 -2.39 -0.02 1.23 16 Total: -1.00 -56.26 314.88 6.18 -50.07 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.81 Total: 28.17 kcal Atomic # 6 Polarization: -23.03 SS G_CDS: 4.86 Total: -18.16 kcal Atomic # 7 Polarization: -67.07 SS G_CDS: -1.49 Total: -68.55 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.03 Total: -31.90 kcal Atomic # 14 Polarization: 38.35 SS G_CDS: 2.03 Total: 40.38 kcal Total: -56.26 6.18 -50.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699007816.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.860 kcal (2) G-P(sol) polarization free energy of solvation -56.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds