Wall clock time and date at job start Mon Mar 30 2020 06:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46497 * 109.47554 * 2 1 4 4 C 1.37104 * 119.99632 * 79.92680 * 3 2 1 5 5 H 1.07994 * 119.99672 * 173.80766 * 4 3 2 6 6 C 1.38949 * 120.00423 * 353.81645 * 4 3 2 7 7 N 1.31415 * 119.99726 * 2.14666 * 6 4 3 8 8 Si 1.86794 * 120.00302 * 182.14861 * 6 4 3 9 9 H 1.48495 * 109.47207 * 59.99839 * 8 6 4 10 10 H 1.48498 * 109.47296 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47213 * 299.99730 * 8 6 4 12 12 C 1.34773 * 120.00244 * 259.93159 * 3 2 1 13 13 O 1.21294 * 119.99993 * 174.56762 * 12 3 2 14 14 C 1.50701 * 119.99906 * 354.56862 * 12 3 2 15 15 C 1.52995 * 110.05249 * 291.32942 * 14 12 3 16 16 C 1.54263 * 110.03119 * 52.74620 * 14 12 3 17 17 C 1.54889 * 104.19493 * 142.89463 * 16 14 12 18 18 C 1.54886 * 102.74908 * 322.05669 * 17 16 14 19 19 H 1.09001 * 110.48803 * 279.26643 * 18 17 16 20 20 C 1.53004 * 110.48825 * 156.75354 * 18 17 16 21 21 C 1.53873 * 110.03116 * 169.91124 * 14 12 3 22 22 C 1.53004 * 110.03150 * 121.43010 * 21 14 12 23 23 C 1.53005 * 110.03219 * 0.02562 * 21 14 12 24 24 H 1.09003 * 109.47695 * 305.86411 * 1 2 3 25 25 H 1.09007 * 109.47442 * 65.86250 * 1 2 3 26 26 H 1.08997 * 109.47700 * 185.86050 * 1 2 3 27 27 H 1.08997 * 109.47395 * 239.99860 * 2 1 3 28 28 H 1.09001 * 109.46810 * 120.00160 * 2 1 3 29 29 H 0.96999 * 119.99886 * 180.02562 * 7 6 4 30 30 H 1.09008 * 109.46944 * 182.99519 * 15 14 12 31 31 H 1.08999 * 109.47373 * 302.99138 * 15 14 12 32 32 H 1.09000 * 109.47441 * 62.99832 * 15 14 12 33 33 H 1.09005 * 110.48922 * 24.21789 * 16 14 12 34 34 H 1.08998 * 110.60081 * 261.62434 * 16 14 12 35 35 H 1.09003 * 110.75746 * 203.74433 * 17 16 14 36 36 H 1.09001 * 110.75648 * 80.37302 * 17 16 14 37 37 H 1.08992 * 109.46936 * 63.24530 * 20 18 17 38 38 H 1.09004 * 109.47152 * 183.24283 * 20 18 17 39 39 H 1.08999 * 109.46685 * 303.23661 * 20 18 17 40 40 H 1.08996 * 109.47085 * 178.62626 * 22 21 14 41 41 H 1.09004 * 109.46786 * 298.62376 * 22 21 14 42 42 H 1.09005 * 109.46825 * 58.61831 * 22 21 14 43 43 H 1.08998 * 109.47024 * 305.21008 * 23 21 14 44 44 H 1.09003 * 109.47308 * 65.21165 * 23 21 14 45 45 H 1.08999 * 109.46894 * 185.20960 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0511 2.0966 1.1691 5 1 2.5027 3.0774 1.1894 6 6 1.5033 1.5599 2.3278 7 7 0.9917 0.3495 2.3131 8 14 1.4941 2.5587 3.9062 9 1 0.7270 3.8124 3.6942 10 1 0.8577 1.7668 4.9894 11 1 2.8896 2.8910 4.2899 12 6 2.4354 1.9485 -1.1492 13 8 2.7465 3.1207 -1.1688 14 6 2.5152 1.1265 -2.4097 15 6 3.6354 0.0912 -2.2909 16 6 1.1679 0.4202 -2.6661 17 6 1.0031 0.4637 -4.2056 18 6 1.5675 1.8592 -4.5704 19 1 0.8195 2.6318 -4.3918 20 6 2.0259 1.8867 -6.0299 21 6 2.7692 2.0415 -3.6205 22 6 4.0626 1.6295 -4.3265 23 6 2.8619 3.4993 -3.1653 24 1 -0.3634 0.6021 0.8328 25 1 -0.3634 0.4203 -0.9379 26 1 -0.3634 -1.0222 0.1049 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 0.6089 -0.0251 3.1218 30 1 3.7198 -0.4618 -3.2264 31 1 4.5777 0.5978 -2.0821 32 1 3.4070 -0.5999 -1.4796 33 1 0.3554 0.9603 -2.1801 34 1 1.2027 -0.6112 -2.3153 35 1 -0.0480 0.3873 -4.4839 36 1 1.5876 -0.3252 -4.6791 37 1 1.1689 1.7227 -6.6830 38 1 2.4721 2.8561 -6.2524 39 1 2.7635 1.1011 -6.1938 40 1 4.2208 2.2674 -5.1961 41 1 4.9018 1.7373 -3.6393 42 1 3.9865 0.5904 -4.6469 43 1 1.9647 3.7628 -2.6051 44 1 3.7378 3.6264 -2.5292 45 1 2.9490 4.1473 -4.0374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699124466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:03 Heat of formation + Delta-G solvation = 21.260979 kcal Electronic energy + Delta-G solvation = -23278.727116 eV Core-core repulsion = 20298.778476 eV Total energy + Delta-G solvation = -2979.948640 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66694 -37.41469 -35.48896 -32.88087 -31.68637 -30.92110 -29.51294 -28.14395 -26.40825 -25.04489 -23.78042 -23.26479 -21.81456 -20.34142 -19.31520 -17.32413 -16.85127 -15.91431 -15.06494 -14.74305 -14.38151 -13.93224 -13.80697 -13.54361 -13.11005 -13.01101 -12.77494 -12.57672 -12.31721 -12.06987 -11.79195 -11.63128 -11.50303 -11.21869 -11.12027 -10.89353 -10.83450 -10.49653 -10.41209 -10.31722 -10.24196 -10.12820 -9.85887 -9.71500 -9.69490 -9.53908 -9.50736 -8.61926 -7.62516 -7.26901 -6.07976 -3.73544 3.20293 3.26102 3.30508 3.96504 4.16087 4.82256 4.91744 4.99933 5.19344 5.26101 5.58903 5.61185 5.65704 5.73855 5.75347 5.81185 5.87565 5.95793 6.06849 6.07522 6.16087 6.17022 6.22612 6.32448 6.34404 6.40544 6.51009 6.54163 6.66667 6.69060 6.70172 6.81217 6.88581 6.88909 6.93457 7.05905 7.17716 7.49500 7.53970 7.71013 7.86756 8.18516 8.64473 9.28566 9.58721 10.12872 10.74828 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030000 B = 0.006766 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.108742 B = 4137.286442 C = 4529.821870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.105 3.895 3 N -0.442 5.442 4 C -0.290 4.290 5 H 0.100 0.900 6 C 0.020 3.980 7 N -0.881 5.881 8 Si 0.928 3.072 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.444 3.556 13 O -0.579 6.579 14 C -0.063 4.063 15 C -0.139 4.139 16 C -0.120 4.120 17 C -0.121 4.121 18 C -0.089 4.089 19 H 0.071 0.929 20 C -0.141 4.141 21 C -0.043 4.043 22 C -0.135 4.135 23 C -0.102 4.102 24 H 0.084 0.916 25 H 0.023 0.977 26 H 0.032 0.968 27 H 0.047 0.953 28 H 0.111 0.889 29 H 0.262 0.738 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.045 0.955 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.071 0.929 44 H 0.076 0.924 45 H -0.005 1.005 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.807 -3.416 -10.755 11.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.018 4.018 3 N -0.159 5.159 4 C -0.418 4.418 5 H 0.118 0.882 6 C -0.180 4.180 7 N -0.524 5.524 8 Si 0.755 3.245 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.234 3.766 13 O -0.466 6.466 14 C -0.066 4.066 15 C -0.196 4.196 16 C -0.158 4.158 17 C -0.158 4.158 18 C -0.107 4.107 19 H 0.089 0.911 20 C -0.198 4.198 21 C -0.044 4.044 22 C -0.192 4.192 23 C -0.159 4.159 24 H 0.102 0.898 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.128 0.872 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.013 0.987 Dipole moment (debyes) X Y Z Total from point charges 0.867 -2.984 -10.555 11.002 hybrid contribution -0.217 0.240 0.930 0.985 sum 0.650 -2.744 -9.624 10.029 Atomic orbital electron populations 1.22370 0.97120 1.00069 1.00398 1.22117 0.94540 0.83799 1.01376 1.43930 1.54032 1.11803 1.06136 1.19739 1.35002 1.01616 0.85433 0.88244 1.25220 0.96785 0.96518 0.99480 1.70205 1.39848 1.14347 1.27964 0.85961 0.78497 0.79277 0.80719 1.20163 1.21053 1.20137 1.19998 0.84347 0.87777 0.84506 1.90663 1.55484 1.16886 1.83558 1.21103 0.95869 0.95336 0.94322 1.22060 0.97976 0.98126 1.01410 1.23032 0.96977 1.00628 0.95124 1.22595 0.99932 0.96784 0.96516 1.22049 0.97242 0.97211 0.94236 0.91099 1.21859 1.00560 1.01506 0.95875 1.21018 0.94015 0.96662 0.92681 1.22053 0.97250 1.00249 0.99690 1.22305 1.05934 0.92051 0.95578 0.89784 0.95832 0.94893 0.93544 0.87187 0.92692 0.92382 0.92563 0.91964 0.90144 0.90751 0.92222 0.91922 0.93545 0.92952 0.92452 0.93159 0.92863 0.92859 0.91044 0.90549 0.98669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.69 37.15 0.32 -2.72 16 2 C 0.10 2.32 4.44 -4.05 -0.02 2.31 16 3 N -0.44 -11.02 2.65 -114.82 -0.30 -11.32 16 4 C -0.29 -7.92 9.48 -14.93 -0.14 -8.06 16 5 H 0.10 2.87 7.20 -52.49 -0.38 2.49 16 6 C 0.02 0.51 5.10 -17.47 -0.09 0.43 16 7 N -0.88 -22.29 7.28 55.50 0.40 -21.89 16 8 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 C 0.44 10.51 6.05 -10.99 -0.07 10.44 16 13 O -0.58 -15.13 10.22 5.55 0.06 -15.08 16 14 C -0.06 -1.16 0.61 -154.55 -0.09 -1.25 16 15 C -0.14 -2.30 7.02 37.15 0.26 -2.04 16 16 C -0.12 -2.02 3.60 -25.07 -0.09 -2.11 16 17 C -0.12 -1.69 6.33 -24.74 -0.16 -1.85 16 18 C -0.09 -1.31 2.90 -88.96 -0.26 -1.57 16 19 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 20 C -0.14 -1.71 7.99 37.16 0.30 -1.41 16 21 C -0.04 -0.73 0.87 -153.39 -0.13 -0.86 16 22 C -0.14 -1.95 6.02 37.16 0.22 -1.73 16 23 C -0.10 -2.01 6.58 37.16 0.24 -1.77 16 24 H 0.08 2.07 5.94 -51.93 -0.31 1.76 16 25 H 0.02 0.47 5.01 -51.93 -0.26 0.21 16 26 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.91 2.35 -51.93 -0.12 0.79 16 28 H 0.11 2.71 5.91 -51.93 -0.31 2.40 16 29 H 0.26 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.06 0.81 6.43 -51.92 -0.33 0.48 16 31 H 0.06 0.96 7.04 -51.93 -0.37 0.60 16 32 H 0.06 1.06 5.77 -51.93 -0.30 0.76 16 33 H 0.08 1.53 5.18 -51.93 -0.27 1.26 16 34 H 0.07 1.20 5.88 -51.93 -0.31 0.89 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.05 0.63 7.78 -51.93 -0.40 0.23 16 39 H 0.06 0.65 6.50 -51.93 -0.34 0.31 16 40 H 0.05 0.66 6.79 -51.93 -0.35 0.31 16 41 H 0.05 0.80 6.95 -51.93 -0.36 0.44 16 42 H 0.05 0.69 5.98 -51.93 -0.31 0.38 16 43 H 0.07 1.61 6.24 -52.04 -0.32 1.28 16 44 H 0.08 1.67 6.38 -52.02 -0.33 1.34 16 45 H -0.01 -0.09 8.14 -51.93 -0.42 -0.52 16 LS Contribution 306.80 15.07 4.62 4.62 Total: -1.00 -27.43 306.80 -6.96 -34.39 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.02 Total: 5.72 kcal Atomic # 6 Polarization: -12.50 SS G_CDS: 0.30 Total: -12.20 kcal Atomic # 7 Polarization: -33.31 SS G_CDS: 0.10 Total: -33.21 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.06 Total: -15.08 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -27.43 -6.96 -34.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699124466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.651 kcal (2) G-P(sol) polarization free energy of solvation -27.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds