Wall clock time and date at job start Mon Mar 30 2020 06:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46497 * 109.47554 * 2 1 4 4 C 1.37104 * 119.99632 * 79.92680 * 3 2 1 5 5 H 1.07994 * 119.99672 * 173.80766 * 4 3 2 6 6 C 1.38949 * 120.00423 * 353.81645 * 4 3 2 7 7 N 1.31415 * 119.99726 * 2.14666 * 6 4 3 8 8 Si 1.86794 * 120.00302 * 182.14861 * 6 4 3 9 9 H 1.48495 * 109.47207 * 59.99839 * 8 6 4 10 10 H 1.48498 * 109.47296 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47213 * 299.99730 * 8 6 4 12 12 C 1.34773 * 120.00244 * 259.93159 * 3 2 1 13 13 O 1.21294 * 119.99993 * 174.56762 * 12 3 2 14 14 C 1.50701 * 119.99906 * 354.56862 * 12 3 2 15 15 C 1.52995 * 110.05249 * 291.32942 * 14 12 3 16 16 C 1.54263 * 110.03119 * 52.74620 * 14 12 3 17 17 C 1.54889 * 104.19493 * 142.89463 * 16 14 12 18 18 C 1.54886 * 102.74908 * 322.05669 * 17 16 14 19 19 H 1.09001 * 110.48803 * 279.26643 * 18 17 16 20 20 C 1.53004 * 110.48825 * 156.75354 * 18 17 16 21 21 C 1.53873 * 110.03116 * 169.91124 * 14 12 3 22 22 C 1.53004 * 110.03150 * 121.43010 * 21 14 12 23 23 C 1.53005 * 110.03219 * 0.02562 * 21 14 12 24 24 H 1.09003 * 109.47695 * 305.86411 * 1 2 3 25 25 H 1.09007 * 109.47442 * 65.86250 * 1 2 3 26 26 H 1.08997 * 109.47700 * 185.86050 * 1 2 3 27 27 H 1.08997 * 109.47395 * 239.99860 * 2 1 3 28 28 H 1.09001 * 109.46810 * 120.00160 * 2 1 3 29 29 H 0.96999 * 119.99886 * 180.02562 * 7 6 4 30 30 H 1.09008 * 109.46944 * 182.99519 * 15 14 12 31 31 H 1.08999 * 109.47373 * 302.99138 * 15 14 12 32 32 H 1.09000 * 109.47441 * 62.99832 * 15 14 12 33 33 H 1.09005 * 110.48922 * 24.21789 * 16 14 12 34 34 H 1.08998 * 110.60081 * 261.62434 * 16 14 12 35 35 H 1.09003 * 110.75746 * 203.74433 * 17 16 14 36 36 H 1.09001 * 110.75648 * 80.37302 * 17 16 14 37 37 H 1.08992 * 109.46936 * 63.24530 * 20 18 17 38 38 H 1.09004 * 109.47152 * 183.24283 * 20 18 17 39 39 H 1.08999 * 109.46685 * 303.23661 * 20 18 17 40 40 H 1.08996 * 109.47085 * 178.62626 * 22 21 14 41 41 H 1.09004 * 109.46786 * 298.62376 * 22 21 14 42 42 H 1.09005 * 109.46825 * 58.61831 * 22 21 14 43 43 H 1.08998 * 109.47024 * 305.21008 * 23 21 14 44 44 H 1.09003 * 109.47308 * 65.21165 * 23 21 14 45 45 H 1.08999 * 109.46894 * 185.20960 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0511 2.0966 1.1691 5 1 2.5027 3.0774 1.1894 6 6 1.5033 1.5599 2.3278 7 7 0.9917 0.3495 2.3131 8 14 1.4941 2.5587 3.9062 9 1 0.7270 3.8124 3.6942 10 1 0.8577 1.7668 4.9894 11 1 2.8896 2.8910 4.2899 12 6 2.4354 1.9485 -1.1492 13 8 2.7465 3.1207 -1.1688 14 6 2.5152 1.1265 -2.4097 15 6 3.6354 0.0912 -2.2909 16 6 1.1679 0.4202 -2.6661 17 6 1.0031 0.4637 -4.2056 18 6 1.5675 1.8592 -4.5704 19 1 0.8195 2.6318 -4.3918 20 6 2.0259 1.8867 -6.0299 21 6 2.7692 2.0415 -3.6205 22 6 4.0626 1.6295 -4.3265 23 6 2.8619 3.4993 -3.1653 24 1 -0.3634 0.6021 0.8328 25 1 -0.3634 0.4203 -0.9379 26 1 -0.3634 -1.0222 0.1049 27 1 1.8933 -0.5138 -0.8899 28 1 1.8932 -0.5139 0.8900 29 1 0.6089 -0.0251 3.1218 30 1 3.7198 -0.4618 -3.2264 31 1 4.5777 0.5978 -2.0821 32 1 3.4070 -0.5999 -1.4796 33 1 0.3554 0.9603 -2.1801 34 1 1.2027 -0.6112 -2.3153 35 1 -0.0480 0.3873 -4.4839 36 1 1.5876 -0.3252 -4.6791 37 1 1.1689 1.7227 -6.6830 38 1 2.4721 2.8561 -6.2524 39 1 2.7635 1.1011 -6.1938 40 1 4.2208 2.2674 -5.1961 41 1 4.9018 1.7373 -3.6393 42 1 3.9865 0.5904 -4.6469 43 1 1.9647 3.7628 -2.6051 44 1 3.7378 3.6264 -2.5292 45 1 2.9490 4.1473 -4.0374 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699124466.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:02 Heat of formation + Delta-G solvation = 7.030439 kcal Electronic energy + Delta-G solvation = -23279.344199 eV Core-core repulsion = 20298.778476 eV Total energy + Delta-G solvation = -2980.565722 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.18718 -39.05248 -37.36321 -34.48937 -33.04181 -32.56922 -31.29043 -29.48902 -27.77702 -26.79685 -25.27217 -24.58218 -23.54448 -21.84629 -20.83116 -18.87412 -18.71312 -17.54653 -16.69696 -16.33738 -15.92250 -15.70175 -15.13769 -15.05047 -14.83022 -14.41239 -14.28377 -14.02010 -13.69454 -13.54677 -13.31994 -13.16412 -12.86875 -12.78985 -12.67627 -12.53829 -12.22067 -12.16965 -12.09031 -11.86940 -11.64895 -11.56966 -11.27933 -11.24871 -11.09769 -11.04086 -10.95043 -10.47185 -9.56232 -9.13117 -8.05344 -5.79018 1.37145 1.39471 1.48555 2.14809 2.28793 3.16843 3.20932 3.60022 3.74581 3.85874 4.26982 4.36552 4.39940 4.43224 4.50963 4.57030 4.58204 4.64604 4.78570 4.88884 4.94083 4.97622 4.99564 5.04483 5.05939 5.07936 5.14605 5.20064 5.23953 5.29134 5.31432 5.37825 5.41157 5.46424 5.48021 5.53905 5.62688 5.75336 5.78355 5.92144 6.02356 6.19984 6.67761 7.29856 7.68506 8.22990 8.73151 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.030000 B = 0.006766 C = 0.006180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.108742 B = 4137.286442 C = 4529.821870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.111 3.889 3 N -0.456 5.456 4 C -0.332 4.332 5 H 0.067 0.933 6 C -0.006 4.006 7 N -0.879 5.879 8 Si 0.983 3.017 9 H -0.282 1.282 10 H -0.269 1.269 11 H -0.276 1.276 12 C 0.431 3.569 13 O -0.616 6.616 14 C -0.062 4.062 15 C -0.134 4.134 16 C -0.119 4.119 17 C -0.109 4.109 18 C -0.088 4.088 19 H 0.050 0.950 20 C -0.135 4.135 21 C -0.046 4.046 22 C -0.130 4.130 23 C -0.089 4.089 24 H 0.048 0.952 25 H 0.035 0.965 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.266 0.734 30 H 0.097 0.903 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.049 0.951 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.080 0.920 43 H 0.031 0.969 44 H 0.043 0.957 45 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 -5.617 -13.034 14.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.011 4.011 3 N -0.174 5.174 4 C -0.460 4.460 5 H 0.086 0.914 6 C -0.206 4.206 7 N -0.520 5.520 8 Si 0.808 3.192 9 H -0.208 1.208 10 H -0.193 1.193 11 H -0.202 1.202 12 C 0.222 3.778 13 O -0.505 6.505 14 C -0.065 4.065 15 C -0.191 4.191 16 C -0.157 4.157 17 C -0.146 4.146 18 C -0.106 4.106 19 H 0.068 0.932 20 C -0.192 4.192 21 C -0.047 4.047 22 C -0.187 4.187 23 C -0.146 4.146 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.093 0.907 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.099 0.901 43 H 0.050 0.950 44 H 0.062 0.938 45 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 0.718 -5.217 -12.840 13.878 hybrid contribution -0.183 1.006 1.665 1.954 sum 0.536 -4.211 -11.175 11.954 Atomic orbital electron populations 1.22222 0.96566 1.00649 0.99550 1.22094 0.94905 0.82469 1.01664 1.44138 1.54664 1.12682 1.05950 1.19600 1.37422 1.01450 0.87561 0.91449 1.25808 0.95951 0.97498 1.01363 1.70326 1.38689 1.14451 1.28569 0.85152 0.78263 0.77925 0.77852 1.20841 1.19316 1.20187 1.21162 0.82803 0.87998 0.85876 1.90673 1.56456 1.18849 1.84519 1.21187 0.97838 0.95588 0.91886 1.22052 0.96431 0.97422 1.03187 1.22957 0.94707 1.00309 0.97702 1.22579 1.01487 0.96789 0.93726 1.22016 0.95644 0.97359 0.95629 0.93187 1.21823 1.01669 1.02095 0.93641 1.21086 0.96807 0.93943 0.92836 1.22017 0.94917 1.02172 0.99593 1.21978 1.02395 0.95152 0.95026 0.93283 0.94645 0.92797 0.90437 0.89595 0.92345 0.88400 0.93729 0.92671 0.93004 0.89562 0.90680 0.89068 0.91868 0.93179 0.90735 0.91563 0.94195 0.90142 0.95049 0.93783 0.96872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.65 8.69 71.98 0.63 -5.02 16 2 C 0.11 4.95 4.44 86.38 0.38 5.34 16 3 N -0.46 -23.72 2.65 -635.57 -1.69 -25.40 16 4 C -0.33 -19.15 9.48 84.04 0.80 -18.35 16 5 H 0.07 4.21 7.20 -2.91 -0.02 4.19 16 6 C -0.01 -0.32 5.10 84.93 0.43 0.11 16 7 N -0.88 -45.05 7.28 21.66 0.16 -44.89 16 8 Si 0.98 43.64 29.55 68.60 2.03 45.67 16 9 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 10 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 12 C 0.43 21.22 6.05 87.66 0.53 21.75 16 13 O -0.62 -34.51 10.22 -3.07 -0.03 -34.54 16 14 C -0.06 -2.23 0.61 -52.21 -0.03 -2.26 16 15 C -0.13 -4.15 7.02 71.98 0.51 -3.65 16 16 C -0.12 -3.77 3.60 31.67 0.11 -3.65 16 17 C -0.11 -2.58 6.33 31.88 0.20 -2.38 16 18 C -0.09 -2.35 2.90 -9.72 -0.03 -2.38 16 19 H 0.05 1.54 7.86 -2.39 -0.02 1.52 16 20 C -0.14 -2.68 7.99 71.98 0.58 -2.11 16 21 C -0.05 -1.50 0.87 -51.46 -0.04 -1.54 16 22 C -0.13 -3.34 6.02 71.98 0.43 -2.91 16 23 C -0.09 -3.61 6.58 71.98 0.47 -3.14 16 24 H 0.05 2.45 5.94 -2.39 -0.01 2.43 16 25 H 0.03 1.41 5.01 -2.38 -0.01 1.40 16 26 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.08 2.94 2.35 -2.39 -0.01 2.94 16 28 H 0.09 4.27 5.91 -2.39 -0.01 4.26 16 29 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 30 H 0.10 2.26 6.43 -2.38 -0.02 2.24 16 31 H 0.04 1.48 7.04 -2.39 -0.02 1.46 16 32 H 0.05 1.77 5.77 -2.39 -0.01 1.76 16 33 H 0.05 1.94 5.18 -2.38 -0.01 1.93 16 34 H 0.09 2.49 5.88 -2.39 -0.01 2.47 16 35 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.09 1.72 8.06 -2.39 -0.02 1.71 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.05 1.02 7.78 -2.38 -0.02 1.00 16 39 H 0.07 1.25 6.50 -2.39 -0.02 1.23 16 40 H 0.07 1.50 6.79 -2.39 -0.02 1.49 16 41 H 0.04 1.13 6.95 -2.38 -0.02 1.11 16 42 H 0.08 1.64 5.98 -2.38 -0.01 1.62 16 43 H 0.03 1.49 6.24 -11.29 -0.07 1.42 16 44 H 0.04 2.04 6.38 -11.03 -0.07 1.97 16 45 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -64.30 306.80 6.31 -57.99 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.87 Total: 21.36 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 4.97 Total: -20.19 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: -1.53 Total: -70.29 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.03 Total: -34.54 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -64.30 6.31 -57.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699124466.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.022 kcal (2) G-P(sol) polarization free energy of solvation -64.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds