Wall clock time and date at job start Mon Mar 30 2020 08:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.54450 * 107.41062 * 2 1 4 4 C 1.52589 * 110.16778 * 116.92959 * 2 1 3 5 5 C 1.52830 * 110.39935 * 71.02276 * 4 2 1 6 6 C 1.53363 * 109.06490 * 181.33009 * 5 4 2 7 7 N 1.46906 * 109.47058 * 175.72362 * 6 5 4 8 8 C 1.46898 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.46764 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46751 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00430 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99819 * 180.02562 * 10 9 8 13 13 N 1.31522 * 120.00002 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00042 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47311 * 59.99500 * 14 12 10 16 16 H 1.48503 * 109.46920 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46818 * 299.99460 * 14 12 10 18 18 C 1.52720 * 108.66622 * 62.47555 * 5 4 2 19 19 C 1.52441 * 110.91529 * 298.63220 * 18 5 4 20 20 C 1.53143 * 109.97904 * 286.81419 * 19 18 5 21 21 C 1.54519 * 107.58099 * 170.31357 * 19 18 5 22 22 C 1.51746 * 112.76515 * 51.45483 * 19 18 5 23 23 H 1.09008 * 109.46425 * 303.07550 * 1 2 3 24 24 H 1.08996 * 109.46985 * 63.07113 * 1 2 3 25 25 H 1.09000 * 109.46986 * 183.07289 * 1 2 3 26 26 H 1.09001 * 109.47146 * 178.58937 * 3 2 1 27 27 H 1.09000 * 109.46960 * 298.58786 * 3 2 1 28 28 H 1.08996 * 109.47096 * 58.59229 * 3 2 1 29 29 H 1.09232 * 109.44870 * 310.68166 * 4 2 1 30 30 H 1.09200 * 109.48563 * 191.43793 * 4 2 1 31 31 H 1.08600 * 110.56268 * 301.01310 * 5 4 2 32 32 H 1.09000 * 109.47323 * 55.72387 * 6 5 4 33 33 H 1.09001 * 109.47364 * 295.71763 * 6 5 4 34 34 H 1.00902 * 110.99923 * 303.95903 * 7 6 5 35 35 H 1.08995 * 109.47296 * 299.99911 * 8 7 6 36 36 H 1.08997 * 109.47334 * 60.00212 * 8 7 6 37 37 H 1.09004 * 109.47056 * 299.99764 * 9 8 7 38 38 H 1.08997 * 109.46954 * 60.00063 * 9 8 7 39 39 H 0.96999 * 119.99593 * 180.02562 * 13 12 10 40 40 H 1.09315 * 109.25288 * 59.33624 * 18 5 4 41 41 H 1.09324 * 109.23733 * 177.93918 * 18 5 4 42 42 H 1.09002 * 109.47436 * 185.58332 * 20 19 18 43 43 H 1.08999 * 109.47430 * 305.57962 * 20 19 18 44 44 H 1.08997 * 109.47421 * 65.58349 * 20 19 18 45 45 H 1.08990 * 109.47420 * 298.06738 * 21 19 18 46 46 H 1.09003 * 109.47085 * 58.07260 * 21 19 18 47 47 H 1.09006 * 109.46840 * 178.06316 * 21 19 18 48 48 H 1.10201 * 108.66663 * 194.16313 * 22 19 18 49 49 H 1.10231 * 108.60300 * 79.20160 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 1.9922 1.4737 0.0000 4 6 2.0562 -0.6487 1.2770 5 6 1.8026 -2.1556 1.2525 6 6 2.3120 -2.7707 2.5618 7 7 1.9810 -4.2016 2.5920 8 6 2.4554 -4.8256 3.8344 9 6 2.0924 -6.3120 3.8293 10 6 2.5785 -6.9520 5.1042 11 1 3.0950 -6.3582 5.8437 12 6 2.3648 -8.2959 5.3259 13 7 1.7362 -9.0192 4.4250 14 14 2.9667 -9.0891 6.9064 15 1 2.3228 -8.4268 8.0691 16 1 2.6145 -10.5318 6.9014 17 1 4.4408 -8.9393 7.0051 18 6 2.5732 -2.7620 0.0818 19 6 2.0949 -2.1810 -1.2439 20 6 0.7156 -2.7460 -1.5955 21 6 3.0761 -2.6515 -2.3409 22 6 2.0819 -0.6636 -1.2494 23 1 -0.3632 0.5609 0.8612 24 1 -0.3633 0.4654 -0.9162 25 1 -0.3633 -1.0262 0.0551 26 1 3.0813 1.5130 0.0253 27 1 1.6317 1.9675 -0.9024 28 1 1.5900 1.9806 0.8771 29 1 1.5513 -0.2118 2.1415 30 1 3.1289 -0.4640 1.3642 31 1 0.7407 -2.3622 1.1572 32 1 1.8388 -2.2704 3.4066 33 1 3.3931 -2.6466 2.6251 34 1 0.9899 -4.3461 2.4698 35 1 3.5374 -4.7157 3.9060 36 1 1.9834 -4.3396 4.6883 37 1 1.0103 -6.4215 3.7579 38 1 2.5640 -6.7982 2.9754 39 1 1.5856 -9.9646 4.5812 40 1 3.6393 -2.5547 0.2060 41 1 2.4278 -3.8455 0.0774 42 1 0.4251 -2.4037 -2.5888 43 1 0.7553 -3.8352 -1.5839 44 1 -0.0155 -2.4012 -0.8643 45 1 4.0725 -2.2650 -2.1273 46 1 3.1052 -3.7410 -2.3593 47 1 2.7425 -2.2806 -3.3101 48 1 1.4975 -0.3190 -2.1178 49 1 3.1110 -0.3037 -1.4120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699460658.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:49:32 Heat of formation + Delta-G solvation = -54.059591 kcal Electronic energy + Delta-G solvation = -21417.107970 eV Core-core repulsion = 18569.726280 eV Total energy + Delta-G solvation = -2847.381690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.08381 -36.15001 -35.02341 -33.45234 -32.03424 -28.96132 -27.95061 -26.71228 -26.64365 -26.11077 -25.20014 -23.11884 -20.78684 -20.09302 -19.76378 -17.93050 -16.27227 -15.48664 -15.20875 -14.87210 -14.58537 -14.40636 -14.23296 -14.03202 -13.39100 -13.19410 -13.13761 -12.78338 -12.42024 -12.38516 -12.14475 -12.08374 -11.79186 -11.59739 -11.58705 -11.44303 -11.07339 -11.00026 -10.88893 -10.87875 -10.70767 -10.60897 -10.54857 -10.09664 -10.01670 -9.89183 -9.77073 -9.27901 -9.11343 -8.32251 -7.71422 -5.97134 -3.99591 3.35034 3.39181 3.41713 4.43375 4.50475 4.51405 4.61311 4.88083 4.95246 5.04935 5.12728 5.22269 5.27778 5.38602 5.47004 5.48644 5.51794 5.58715 5.64588 5.67566 5.69954 5.75868 5.80510 5.82649 5.84324 5.93663 5.94165 5.98855 6.08450 6.10716 6.13830 6.17933 6.24472 6.38129 6.40499 6.43633 6.45386 6.51931 6.64648 6.69871 7.03035 7.55114 7.77515 7.87678 8.02715 8.13127 8.47270 9.07651 9.63919 11.14274 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030384 B = 0.003366 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.318807 B = 8315.394530 C = 8756.095462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.056 4.056 3 C -0.145 4.145 4 C -0.101 4.101 5 C -0.080 4.080 6 C 0.061 3.939 7 N -0.689 5.689 8 C 0.066 3.934 9 C 0.026 3.974 10 C -0.522 4.522 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.093 4.093 19 C -0.058 4.058 20 C -0.144 4.144 21 C -0.145 4.145 22 C -0.090 4.090 23 H 0.051 0.949 24 H 0.050 0.950 25 H 0.063 0.937 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.019 0.981 33 H 0.064 0.936 34 H 0.334 0.666 35 H 0.056 0.944 36 H 0.013 0.987 37 H 0.013 0.987 38 H 0.025 0.975 39 H 0.261 0.739 40 H 0.054 0.946 41 H 0.078 0.922 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.048 0.952 48 H 0.053 0.947 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.112 19.523 -12.611 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.056 4.056 3 C -0.203 4.203 4 C -0.139 4.139 5 C -0.099 4.099 6 C -0.068 4.068 7 N -0.319 5.319 8 C -0.062 4.062 9 C -0.011 4.011 10 C -0.561 4.561 11 H 0.071 0.929 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.720 3.280 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.202 1.202 18 C -0.130 4.130 19 C -0.058 4.058 20 C -0.201 4.201 21 C -0.202 4.202 22 C -0.128 4.128 23 H 0.070 0.930 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.075 0.925 36 H 0.031 0.969 37 H 0.031 0.969 38 H 0.043 0.957 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.072 0.928 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.591 19.161 -13.016 23.172 hybrid contribution -0.277 -0.111 1.532 1.560 sum -0.868 19.050 -11.485 22.261 Atomic orbital electron populations 1.22027 0.94787 1.02166 1.01132 1.20355 0.95418 0.94628 0.95176 1.22296 1.00883 0.95795 1.01311 1.21537 1.00888 0.95152 0.96323 1.21036 1.00141 0.93748 0.94987 1.22080 1.00379 0.89165 0.95219 1.60560 1.21035 1.11133 1.39205 1.22135 0.98930 0.97887 0.87247 1.19056 0.96665 0.88249 0.97169 1.21159 1.37148 0.94114 1.03671 0.92867 1.25003 0.95297 0.97386 0.96672 1.69968 1.41734 1.07177 1.34414 0.86654 0.79272 0.78217 0.83813 1.20312 1.21273 1.20225 1.21425 0.98831 1.01178 0.91612 1.20391 0.95524 0.94150 0.95771 1.22053 0.96438 1.01005 1.00592 1.22301 0.98701 1.01384 0.97862 1.21320 1.00777 0.94201 0.96481 0.92991 0.93074 0.91869 0.92903 0.93060 0.92857 0.92410 0.92103 0.91153 0.96253 0.91725 0.84913 0.92530 0.96904 0.96888 0.95689 0.92964 0.92681 0.90302 0.93418 0.92443 0.92244 0.93051 0.92469 0.93308 0.92811 0.92718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 7.98 37.16 0.30 -0.98 16 2 C -0.06 -0.51 0.70 -154.54 -0.11 -0.62 16 3 C -0.15 -1.19 8.09 37.92 0.31 -0.88 16 4 C -0.10 -1.05 3.78 -27.03 -0.10 -1.15 16 5 C -0.08 -0.97 2.13 -90.66 -0.19 -1.16 16 6 C 0.06 0.90 5.05 -3.63 -0.02 0.88 16 7 N -0.69 -12.34 5.94 -113.57 -0.67 -13.02 16 8 C 0.07 1.43 5.62 -3.82 -0.02 1.41 16 9 C 0.03 0.69 5.23 -27.88 -0.15 0.54 16 10 C -0.52 -15.08 9.11 -34.44 -0.31 -15.39 16 11 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 12 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -27.25 13.29 55.43 0.74 -26.51 16 14 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C -0.09 -1.14 3.69 -27.16 -0.10 -1.24 16 19 C -0.06 -0.60 0.71 -154.56 -0.11 -0.71 16 20 C -0.14 -1.47 8.01 37.23 0.30 -1.17 16 21 C -0.15 -1.44 8.06 37.95 0.31 -1.13 16 22 C -0.09 -0.84 3.47 -27.95 -0.10 -0.94 16 23 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 24 H 0.05 0.42 8.09 -51.93 -0.42 0.00 16 25 H 0.06 0.60 4.49 -51.93 -0.23 0.36 16 26 H 0.05 0.43 8.08 -51.93 -0.42 0.01 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.60 8.13 -51.80 -0.42 0.17 16 30 H 0.06 0.64 8.12 -51.82 -0.42 0.22 16 31 H 0.07 0.87 6.16 -52.15 -0.32 0.55 16 32 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.33 5.83 8.73 -39.29 -0.34 5.48 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 40 H 0.05 0.70 8.10 -51.75 -0.42 0.28 16 41 H 0.08 1.14 7.65 -51.75 -0.40 0.74 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 44 H 0.06 0.60 4.69 -51.93 -0.24 0.36 16 45 H 0.05 0.50 8.05 -51.93 -0.42 0.08 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.05 0.48 7.96 -51.24 -0.41 0.07 16 49 H 0.05 0.51 7.60 -51.23 -0.39 0.12 16 LS Contribution 364.88 15.07 5.50 5.50 Total: -1.00 -29.35 364.88 -9.45 -38.80 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -9.89 Total: -0.72 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -0.10 Total: -20.95 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.06 Total: -39.53 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.35 -9.45 -38.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699460658.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.259 kcal (2) G-P(sol) polarization free energy of solvation -29.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds