Wall clock time and date at job start Mon Mar 30 2020 08:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.54450 * 107.41062 * 2 1 4 4 C 1.52589 * 110.16778 * 116.92959 * 2 1 3 5 5 C 1.52830 * 110.39935 * 71.02276 * 4 2 1 6 6 C 1.53363 * 109.06490 * 181.33009 * 5 4 2 7 7 N 1.46906 * 109.47058 * 175.72362 * 6 5 4 8 8 C 1.46898 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.46764 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46751 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00430 * 359.97438 * 10 9 8 12 12 C 1.37879 * 119.99819 * 180.02562 * 10 9 8 13 13 N 1.31522 * 120.00002 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00042 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47311 * 59.99500 * 14 12 10 16 16 H 1.48503 * 109.46920 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.46818 * 299.99460 * 14 12 10 18 18 C 1.52720 * 108.66622 * 62.47555 * 5 4 2 19 19 C 1.52441 * 110.91529 * 298.63220 * 18 5 4 20 20 C 1.53143 * 109.97904 * 286.81419 * 19 18 5 21 21 C 1.54519 * 107.58099 * 170.31357 * 19 18 5 22 22 C 1.51746 * 112.76515 * 51.45483 * 19 18 5 23 23 H 1.09008 * 109.46425 * 303.07550 * 1 2 3 24 24 H 1.08996 * 109.46985 * 63.07113 * 1 2 3 25 25 H 1.09000 * 109.46986 * 183.07289 * 1 2 3 26 26 H 1.09001 * 109.47146 * 178.58937 * 3 2 1 27 27 H 1.09000 * 109.46960 * 298.58786 * 3 2 1 28 28 H 1.08996 * 109.47096 * 58.59229 * 3 2 1 29 29 H 1.09232 * 109.44870 * 310.68166 * 4 2 1 30 30 H 1.09200 * 109.48563 * 191.43793 * 4 2 1 31 31 H 1.08600 * 110.56268 * 301.01310 * 5 4 2 32 32 H 1.09000 * 109.47323 * 55.72387 * 6 5 4 33 33 H 1.09001 * 109.47364 * 295.71763 * 6 5 4 34 34 H 1.00902 * 110.99923 * 303.95903 * 7 6 5 35 35 H 1.08995 * 109.47296 * 299.99911 * 8 7 6 36 36 H 1.08997 * 109.47334 * 60.00212 * 8 7 6 37 37 H 1.09004 * 109.47056 * 299.99764 * 9 8 7 38 38 H 1.08997 * 109.46954 * 60.00063 * 9 8 7 39 39 H 0.96999 * 119.99593 * 180.02562 * 13 12 10 40 40 H 1.09315 * 109.25288 * 59.33624 * 18 5 4 41 41 H 1.09324 * 109.23733 * 177.93918 * 18 5 4 42 42 H 1.09002 * 109.47436 * 185.58332 * 20 19 18 43 43 H 1.08999 * 109.47430 * 305.57962 * 20 19 18 44 44 H 1.08997 * 109.47421 * 65.58349 * 20 19 18 45 45 H 1.08990 * 109.47420 * 298.06738 * 21 19 18 46 46 H 1.09003 * 109.47085 * 58.07260 * 21 19 18 47 47 H 1.09006 * 109.46840 * 178.06316 * 21 19 18 48 48 H 1.10201 * 108.66663 * 194.16313 * 22 19 18 49 49 H 1.10231 * 108.60300 * 79.20160 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 1.9922 1.4737 0.0000 4 6 2.0562 -0.6487 1.2770 5 6 1.8026 -2.1556 1.2525 6 6 2.3120 -2.7707 2.5618 7 7 1.9810 -4.2016 2.5920 8 6 2.4554 -4.8256 3.8344 9 6 2.0924 -6.3120 3.8293 10 6 2.5785 -6.9520 5.1042 11 1 3.0950 -6.3582 5.8437 12 6 2.3648 -8.2959 5.3259 13 7 1.7362 -9.0192 4.4250 14 14 2.9667 -9.0891 6.9064 15 1 2.3228 -8.4268 8.0691 16 1 2.6145 -10.5318 6.9014 17 1 4.4408 -8.9393 7.0051 18 6 2.5732 -2.7620 0.0818 19 6 2.0949 -2.1810 -1.2439 20 6 0.7156 -2.7460 -1.5955 21 6 3.0761 -2.6515 -2.3409 22 6 2.0819 -0.6636 -1.2494 23 1 -0.3632 0.5609 0.8612 24 1 -0.3633 0.4654 -0.9162 25 1 -0.3633 -1.0262 0.0551 26 1 3.0813 1.5130 0.0253 27 1 1.6317 1.9675 -0.9024 28 1 1.5900 1.9806 0.8771 29 1 1.5513 -0.2118 2.1415 30 1 3.1289 -0.4640 1.3642 31 1 0.7407 -2.3622 1.1572 32 1 1.8388 -2.2704 3.4066 33 1 3.3931 -2.6466 2.6251 34 1 0.9899 -4.3461 2.4698 35 1 3.5374 -4.7157 3.9060 36 1 1.9834 -4.3396 4.6883 37 1 1.0103 -6.4215 3.7579 38 1 2.5640 -6.7982 2.9754 39 1 1.5856 -9.9646 4.5812 40 1 3.6393 -2.5547 0.2060 41 1 2.4278 -3.8455 0.0774 42 1 0.4251 -2.4037 -2.5888 43 1 0.7553 -3.8352 -1.5839 44 1 -0.0155 -2.4012 -0.8643 45 1 4.0725 -2.2650 -2.1273 46 1 3.1052 -3.7410 -2.3593 47 1 2.7425 -2.2806 -3.3101 48 1 1.4975 -0.3190 -2.1178 49 1 3.1110 -0.3037 -1.4120 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699460658.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:49:31 Heat of formation + Delta-G solvation = -69.309173 kcal Electronic energy + Delta-G solvation = -21417.769242 eV Core-core repulsion = 18569.726280 eV Total energy + Delta-G solvation = -2848.042962 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.95213 -37.62008 -35.81112 -35.31423 -33.61235 -30.77365 -28.69461 -27.44976 -27.38908 -27.00957 -26.88359 -24.75578 -22.50491 -21.36135 -20.56542 -18.80849 -18.47355 -16.83355 -16.47669 -16.11203 -15.89620 -15.54189 -15.22154 -15.03560 -14.70807 -14.58934 -14.06387 -13.93708 -13.82568 -13.62364 -13.21355 -13.05556 -12.90002 -12.83668 -12.54376 -12.52509 -12.46085 -12.39293 -12.33672 -12.00541 -11.86171 -11.69055 -11.57960 -11.45652 -11.41628 -11.31076 -10.97183 -10.68250 -10.64678 -10.56083 -9.22057 -8.20633 -6.32498 1.39671 1.43233 1.51211 2.40275 3.12449 3.35955 3.69351 3.71881 3.88487 4.12945 4.19643 4.27935 4.30743 4.35581 4.47711 4.56703 4.58975 4.66361 4.76645 4.78576 4.82564 4.85371 4.89439 4.91981 4.93415 5.01833 5.03492 5.06463 5.09185 5.13869 5.17562 5.21369 5.24747 5.33968 5.37688 5.41148 5.44355 5.57078 5.58031 5.65070 5.68173 5.70631 5.74309 5.79609 6.15312 6.30491 6.57362 6.84695 7.36733 8.91342 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030384 B = 0.003366 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.318807 B = 8315.394530 C = 8756.095462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.055 4.055 3 C -0.142 4.142 4 C -0.097 4.097 5 C -0.071 4.071 6 C 0.063 3.937 7 N -0.692 5.692 8 C 0.085 3.915 9 C 0.033 3.967 10 C -0.548 4.548 11 H 0.059 0.941 12 C 0.001 3.999 13 N -0.932 5.932 14 Si 0.968 3.032 15 H -0.266 1.266 16 H -0.282 1.282 17 H -0.267 1.267 18 C -0.088 4.088 19 C -0.055 4.055 20 C -0.143 4.143 21 C -0.144 4.144 22 C -0.088 4.088 23 H 0.054 0.946 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.061 0.939 34 H 0.336 0.664 35 H 0.054 0.946 36 H 0.016 0.984 37 H -0.009 1.009 38 H -0.007 1.007 39 H 0.264 0.736 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.059 0.941 45 H 0.052 0.948 46 H 0.044 0.956 47 H 0.061 0.939 48 H 0.064 0.936 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.892 21.199 -12.375 24.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.055 4.055 3 C -0.200 4.200 4 C -0.135 4.135 5 C -0.090 4.090 6 C -0.066 4.066 7 N -0.323 5.323 8 C -0.044 4.044 9 C -0.004 4.004 10 C -0.586 4.586 11 H 0.078 0.922 12 C -0.197 4.197 13 N -0.571 5.571 14 Si 0.792 3.208 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.192 1.192 18 C -0.126 4.126 19 C -0.055 4.055 20 C -0.200 4.200 21 C -0.201 4.201 22 C -0.126 4.126 23 H 0.073 0.927 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.009 0.991 38 H 0.012 0.988 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.078 0.922 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.083 0.917 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.371 20.862 -12.788 24.472 hybrid contribution -0.360 -0.637 1.410 1.589 sum -0.731 20.225 -11.378 23.217 Atomic orbital electron populations 1.22021 0.94442 1.01775 1.01805 1.20337 0.95649 0.95264 0.94209 1.22256 1.00952 0.94809 1.01935 1.21506 1.01047 0.93512 0.97423 1.20953 0.99758 0.94979 0.93288 1.22157 1.00356 0.87057 0.97020 1.60473 1.21239 1.13429 1.37153 1.21754 0.98779 0.94946 0.88957 1.18903 0.94753 0.91388 0.95370 1.21600 1.37499 0.94921 1.04577 0.92228 1.25992 0.95207 0.98027 1.00519 1.70108 1.42758 1.07620 1.36655 0.85468 0.79084 0.77155 0.79129 1.19091 1.20702 1.19151 1.21355 0.98584 0.99568 0.93093 1.20356 0.95547 0.95067 0.94565 1.22041 0.96433 1.00085 1.01410 1.22289 0.98780 1.00669 0.98403 1.21290 1.01238 0.93000 0.97029 0.92707 0.92108 0.92734 0.92842 0.92168 0.92565 0.92039 0.92125 0.91286 0.95682 0.92006 0.84630 0.92722 0.96611 0.99091 0.98827 0.92707 0.93298 0.93086 0.92072 0.93903 0.92204 0.92869 0.93649 0.91955 0.91732 0.92435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 7.98 71.99 0.57 -1.65 16 2 C -0.05 -0.88 0.70 -52.20 -0.04 -0.91 16 3 C -0.14 -1.95 8.09 72.47 0.59 -1.36 16 4 C -0.10 -1.86 3.78 30.40 0.11 -1.74 16 5 C -0.07 -1.67 2.13 -10.82 -0.02 -1.69 16 6 C 0.06 1.83 5.05 86.42 0.44 2.27 16 7 N -0.69 -25.23 5.94 -513.22 -3.05 -28.28 16 8 C 0.08 3.70 5.62 86.31 0.49 4.19 16 9 C 0.03 1.83 5.23 29.85 0.16 1.99 16 10 C -0.55 -32.03 9.11 25.60 0.23 -31.80 16 11 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 12 C 0.00 0.03 5.46 84.65 0.46 0.50 16 13 N -0.93 -57.81 13.29 21.45 0.28 -57.53 16 14 Si 0.97 44.87 29.54 68.60 2.03 46.90 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 C -0.09 -2.16 3.69 30.32 0.11 -2.05 16 19 C -0.06 -1.09 0.71 -52.21 -0.04 -1.12 16 20 C -0.14 -2.81 8.01 72.03 0.58 -2.23 16 21 C -0.14 -2.72 8.06 72.50 0.58 -2.14 16 22 C -0.09 -1.46 3.47 29.80 0.10 -1.35 16 23 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.06 0.83 8.09 -2.39 -0.02 0.81 16 25 H 0.05 0.94 4.49 -2.39 -0.01 0.93 16 26 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 1.15 8.13 -2.26 -0.02 1.13 16 30 H 0.06 1.18 8.12 -2.28 -0.02 1.16 16 31 H 0.07 1.66 6.16 -2.60 -0.02 1.65 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.34 12.01 8.73 -89.69 -0.78 11.22 16 35 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 37 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 38 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 39 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.05 1.24 8.10 -2.22 -0.02 1.22 16 41 H 0.05 1.53 7.65 -2.21 -0.02 1.51 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.04 0.95 8.09 -2.39 -0.02 0.93 16 44 H 0.06 1.17 4.69 -2.39 -0.01 1.16 16 45 H 0.05 0.97 8.05 -2.39 -0.02 0.95 16 46 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 48 H 0.06 0.96 7.96 -1.74 -0.01 0.95 16 49 H 0.06 0.94 7.60 -1.73 -0.01 0.92 16 Total: -1.00 -63.12 364.88 3.69 -59.43 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: 0.10 Total: 18.60 kcal Atomic # 6 Polarization: -43.44 SS G_CDS: 4.33 Total: -39.12 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -2.76 Total: -85.81 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -63.12 3.69 -59.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699460658.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.877 kcal (2) G-P(sol) polarization free energy of solvation -63.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds