Wall clock time and date at job start Mon Mar 30 2020 07:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.53778 * 113.61691 * 247.49864 * 3 2 1 5 5 C 1.53777 * 87.08311 * 220.01898 * 4 3 2 6 6 C 1.53004 * 113.61112 * 139.97696 * 5 4 3 7 7 N 1.46901 * 109.47008 * 87.50984 * 6 5 4 8 8 C 1.46853 * 110.99703 * 294.20688 * 7 6 5 9 9 C 1.53028 * 109.52256 * 174.16305 * 8 7 6 10 10 C 1.53121 * 109.28074 * 59.17725 * 9 8 7 11 11 C 1.53002 * 109.52102 * 182.43990 * 10 9 8 12 12 C 1.50704 * 109.47234 * 294.68309 * 11 10 9 13 13 H 1.07998 * 120.00347 * 0.02562 * 12 11 10 14 14 C 1.37878 * 120.00044 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99698 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00083 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46996 * 59.99940 * 16 14 12 18 18 H 1.48495 * 109.47098 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47142 * 300.00058 * 16 14 12 20 20 C 1.53111 * 109.15917 * 302.34273 * 10 9 8 21 21 C 1.46843 * 111.00116 * 170.00093 * 7 6 5 22 22 C 1.53782 * 87.08196 * 25.43204 * 5 4 3 23 23 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47054 * 299.99711 * 1 2 3 25 25 H 1.09000 * 109.47187 * 59.99767 * 1 2 3 26 26 H 1.09002 * 112.85348 * 18.80733 * 3 2 1 27 27 H 1.09000 * 113.61518 * 334.57419 * 4 3 2 28 28 H 1.09003 * 113.61548 * 105.46925 * 4 3 2 29 29 H 1.08996 * 113.69322 * 270.86850 * 5 4 3 30 30 H 1.08999 * 109.47054 * 207.50371 * 6 5 4 31 31 H 1.08994 * 109.47650 * 327.50349 * 6 5 4 32 32 H 1.09002 * 109.46164 * 294.17616 * 8 7 6 33 33 H 1.08998 * 109.46207 * 54.14362 * 8 7 6 34 34 H 1.09001 * 109.50751 * 299.23421 * 9 8 7 35 35 H 1.09002 * 109.50592 * 179.12211 * 9 8 7 36 36 H 1.08999 * 109.57073 * 62.28870 * 10 9 8 37 37 H 1.08997 * 109.47246 * 54.68205 * 11 10 9 38 38 H 1.08997 * 109.47078 * 174.68179 * 11 10 9 39 39 H 0.97007 * 119.99555 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.50774 * 297.71407 * 20 10 9 41 41 H 1.09008 * 109.49971 * 177.59359 * 20 10 9 42 42 H 1.08999 * 109.46198 * 305.84644 * 21 7 6 43 43 H 1.09001 * 109.46733 * 65.82932 * 21 7 6 44 44 H 1.08996 * 113.61852 * 220.01446 * 22 5 4 45 45 H 1.09007 * 113.61807 * 89.11121 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 2.7534 1.6490 -1.3017 5 6 3.8226 2.3183 -0.4222 6 6 5.2542 2.0680 -0.9007 7 7 5.6270 3.0916 -1.8863 8 6 4.8185 2.9669 -3.1059 9 6 5.1303 4.1322 -4.0475 10 6 6.6210 4.1150 -4.3969 11 6 6.9508 5.3132 -5.2894 12 6 6.2378 5.1679 -6.6091 13 1 5.6116 4.3074 -6.7928 14 6 6.3847 6.1337 -7.5821 15 7 7.1468 7.1820 -7.3582 16 14 5.5015 5.9533 -9.2182 17 1 4.0358 5.8981 -8.9860 18 1 5.8215 7.1163 -10.0843 19 1 5.9446 4.7024 -9.8846 20 6 7.4406 4.1974 -3.1063 21 6 7.0619 3.0300 -2.1920 22 6 3.3756 1.3720 0.7045 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.3138 2.0789 0.3238 27 1 3.1165 0.7742 -1.8411 28 1 2.2140 2.3478 -1.9411 29 1 3.6235 3.3695 -0.2143 30 1 5.9351 2.1170 -0.0510 31 1 5.3167 1.0816 -1.3600 32 1 5.0536 2.0256 -3.6028 33 1 3.7607 2.9847 -2.8438 34 1 4.8825 5.0733 -3.5565 35 1 4.5416 4.0309 -4.9593 36 1 6.8620 3.1915 -4.9234 37 1 6.6257 6.2312 -4.8000 38 1 8.0265 5.3538 -5.4602 39 1 7.2505 7.8613 -8.0429 40 1 7.2292 5.1394 -2.6004 41 1 8.5027 4.1425 -3.3456 42 1 7.6335 3.0938 -1.2661 43 1 7.2865 2.0885 -2.6933 44 1 3.3385 1.8470 1.6848 45 1 3.9088 0.4213 0.7137 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704232339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:54:09 Heat of formation + Delta-G solvation = -61.639881 kcal Electronic energy + Delta-G solvation = -20824.819136 eV Core-core repulsion = 17841.275645 eV Total energy + Delta-G solvation = -2983.543491 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.87129 -39.59283 -37.31084 -35.78271 -34.09511 -31.72504 -30.39863 -28.23300 -27.24776 -26.61587 -25.35543 -23.99938 -22.95189 -21.88715 -20.65327 -20.20785 -18.41938 -17.73448 -17.02047 -16.56920 -16.42836 -16.15761 -15.80078 -15.25379 -15.17420 -14.94053 -14.67888 -14.05645 -13.88838 -13.73708 -13.36766 -13.32872 -13.16952 -12.91778 -12.68120 -12.57806 -12.39673 -12.32223 -12.17101 -12.00878 -11.72982 -11.67784 -11.45485 -11.25709 -11.14172 -10.84912 -10.67395 -10.51941 -10.29899 -9.19288 -8.17085 -6.26868 1.39082 1.42014 1.49756 2.41796 2.84984 3.06722 3.15822 3.62741 3.71279 3.88992 3.94387 4.08245 4.10041 4.11107 4.28415 4.40201 4.50991 4.54443 4.57953 4.62963 4.66537 4.73666 4.78974 4.84164 4.86132 4.87795 4.89370 4.93766 4.98699 5.06459 5.14631 5.18178 5.27569 5.38674 5.42639 5.46308 5.49480 5.58312 5.81724 5.89940 6.21572 6.27328 6.32309 6.36153 6.89038 7.41351 8.94699 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.024466 B = 0.003672 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.184774 B = 7624.095383 C = 8552.840814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.059 3.941 4 C -0.156 4.156 5 C -0.098 4.098 6 C 0.070 3.930 7 N -0.543 5.543 8 C 0.064 3.936 9 C -0.094 4.094 10 C -0.075 4.075 11 C 0.035 3.965 12 C -0.531 4.531 13 H 0.059 0.941 14 C -0.002 4.002 15 N -0.936 5.936 16 Si 0.961 3.039 17 H -0.266 1.266 18 H -0.284 1.284 19 H -0.268 1.268 20 C -0.107 4.107 21 C 0.065 3.935 22 C -0.122 4.122 23 H 0.093 0.907 24 H 0.053 0.947 25 H 0.043 0.957 26 H 0.100 0.900 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.023 0.977 33 H 0.089 0.911 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.044 0.956 37 H -0.012 1.012 38 H -0.015 1.015 39 H 0.262 0.738 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.029 0.971 44 H 0.087 0.913 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.291 -13.283 17.409 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C 0.002 3.998 4 C -0.194 4.194 5 C -0.117 4.117 6 C -0.058 4.058 7 N -0.268 5.268 8 C -0.064 4.064 9 C -0.132 4.132 10 C -0.094 4.094 11 C -0.002 4.002 12 C -0.569 4.569 13 H 0.077 0.923 14 C -0.199 4.199 15 N -0.576 5.576 16 Si 0.785 3.215 17 H -0.191 1.191 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.144 4.144 21 C -0.062 4.062 22 C -0.160 4.160 23 H 0.111 0.889 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.107 0.893 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.006 0.994 38 H 0.003 0.997 39 H 0.071 0.929 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.047 0.953 44 H 0.105 0.895 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.214 -12.846 17.538 24.020 hybrid contribution -0.112 -0.145 -1.675 1.685 sum -10.326 -12.991 15.863 22.957 Atomic orbital electron populations 1.22942 0.80062 1.03586 1.00645 1.87908 1.21105 1.28413 1.94715 1.23830 0.94324 0.85003 0.96660 1.23667 0.98059 1.00312 0.97324 1.22262 0.93213 0.99726 0.96480 1.22079 0.96624 0.92000 0.95074 1.61949 1.04123 1.49033 1.11682 1.22159 0.98550 0.96023 0.89681 1.21427 0.95913 0.98104 0.97796 1.21089 0.95544 0.97834 0.94937 1.18997 0.94371 0.93099 0.93764 1.21626 1.28438 1.06498 1.00350 0.92285 1.25964 0.96284 0.95010 1.02687 1.70105 1.40329 1.11466 1.35727 0.85570 0.79244 0.77709 0.78962 1.19130 1.20937 1.19310 1.21594 0.98922 0.98771 0.95158 1.22028 0.88567 0.96468 0.99183 1.23184 0.94696 0.99837 0.98276 0.88855 0.92859 0.93786 0.88192 0.90542 0.91315 0.88244 0.89520 0.95142 0.95912 0.89309 0.93207 0.92807 0.93740 0.99355 0.99676 0.92921 0.92539 0.92105 0.89191 0.95308 0.89472 0.89599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.85 113.37 1.23 1.55 16 2 O -0.40 -7.96 10.71 -148.98 -1.60 -9.56 16 3 C 0.06 1.02 4.31 31.12 0.13 1.15 16 4 C -0.16 -3.05 5.73 31.12 0.18 -2.87 16 5 C -0.10 -1.83 3.45 -10.27 -0.04 -1.87 16 6 C 0.07 1.48 4.87 86.30 0.42 1.90 16 7 N -0.54 -14.93 4.66 -896.36 -4.17 -19.10 16 8 C 0.06 1.93 5.05 86.32 0.44 2.36 16 9 C -0.09 -3.65 5.15 30.64 0.16 -3.50 16 10 C -0.08 -3.20 2.20 -10.72 -0.02 -3.23 16 11 C 0.03 1.88 4.45 29.85 0.13 2.02 16 12 C -0.53 -30.66 8.45 25.60 0.22 -30.45 16 13 H 0.06 3.27 7.08 -2.91 -0.02 3.25 16 14 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 15 N -0.94 -58.19 13.29 21.45 0.28 -57.91 16 16 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 17 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 18 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 19 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 20 C -0.11 -3.77 5.38 30.65 0.16 -3.61 16 21 C 0.07 1.84 5.46 86.33 0.47 2.31 16 22 C -0.12 -1.93 7.47 31.12 0.23 -1.70 16 23 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 25 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 26 H 0.10 1.41 7.87 -2.39 -0.02 1.40 16 27 H 0.08 1.67 7.90 -2.39 -0.02 1.65 16 28 H 0.07 1.37 7.23 -2.39 -0.02 1.35 16 29 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.09 1.62 7.99 -2.39 -0.02 1.60 16 31 H 0.03 0.67 7.82 -2.39 -0.02 0.65 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 2.41 4.96 -2.39 -0.01 2.40 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.05 2.23 7.05 -2.39 -0.02 2.21 16 36 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 37 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 38 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 40 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.06 2.10 8.14 -2.38 -0.02 2.09 16 42 H 0.09 2.12 8.02 -2.39 -0.02 2.10 16 43 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.09 1.44 8.10 -2.38 -0.02 1.42 16 Total: -1.00 -66.04 345.97 1.64 -64.41 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.92 Total: 10.69 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 4.18 Total: -35.59 kcal Atomic # 7 Polarization: -73.12 SS G_CDS: -3.89 Total: -77.01 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: -1.60 Total: -9.56 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -66.04 1.64 -64.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704232339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.766 kcal (2) G-P(sol) polarization free energy of solvation -66.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds