Wall clock time and date at job start Mon Mar 30 2020 06:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46872 * 2 1 4 4 C 1.46902 * 110.99635 * 198.65011 * 3 2 1 5 5 C 1.50689 * 109.47550 * 66.04692 * 4 3 2 6 6 H 1.07999 * 120.00151 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00434 * 179.97438 * 5 4 3 8 8 N 1.31524 * 119.99717 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00560 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46655 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47182 * 120.00000 * 9 7 5 12 12 H 1.48498 * 109.47131 * 240.00531 * 9 7 5 13 13 C 1.46901 * 110.99712 * 74.69535 * 3 2 1 14 14 C 1.50702 * 109.46576 * 200.02704 * 13 3 2 15 15 O 1.20759 * 120.00646 * 4.90853 * 14 13 3 16 16 C 1.50706 * 119.99501 * 184.90985 * 14 13 3 17 17 C 1.52997 * 117.49795 * 209.78419 * 16 14 13 18 18 C 1.52998 * 117.50391 * 215.00377 * 17 16 14 19 19 C 1.53001 * 117.49881 * 0.03194 * 17 16 14 20 20 C 1.52992 * 117.49866 * 278.44806 * 16 14 13 21 21 C 1.52997 * 117.50035 * 359.97438 * 20 16 14 22 22 C 1.53000 * 117.49769 * 144.97699 * 20 16 14 23 23 H 1.09003 * 109.47211 * 180.46077 * 1 2 3 24 24 H 1.08999 * 109.47312 * 300.46505 * 1 2 3 25 25 H 1.09003 * 109.47163 * 60.46384 * 1 2 3 26 26 H 1.09006 * 109.47093 * 240.00232 * 2 1 3 27 27 H 1.08996 * 109.46978 * 119.99944 * 2 1 3 28 28 H 1.09002 * 109.46830 * 186.05130 * 4 3 2 29 29 H 1.09004 * 109.46927 * 306.04233 * 4 3 2 30 30 H 0.96996 * 119.99642 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47054 * 80.02995 * 13 3 2 32 32 H 1.08994 * 109.47149 * 320.02451 * 13 3 2 33 33 H 1.09004 * 115.55055 * 64.12273 * 16 14 13 34 34 H 1.08994 * 109.47080 * 111.39091 * 18 17 16 35 35 H 1.08999 * 109.47181 * 231.39928 * 18 17 16 36 36 H 1.09000 * 109.46525 * 351.39699 * 18 17 16 37 37 H 1.08998 * 109.47517 * 73.53563 * 19 17 16 38 38 H 1.09002 * 109.47354 * 193.53689 * 19 17 16 39 39 H 1.09007 * 109.47119 * 313.53464 * 19 17 16 40 40 H 1.09002 * 109.47281 * 69.44313 * 21 20 16 41 41 H 1.08999 * 109.47173 * 189.44362 * 21 20 16 42 42 H 1.09002 * 109.46949 * 309.43803 * 21 20 16 43 43 H 1.09002 * 109.47202 * 8.60685 * 22 20 16 44 44 H 1.09002 * 109.47444 * 128.61077 * 22 20 16 45 45 H 1.09008 * 109.47111 * 248.60911 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4202 1.4482 -0.4386 5 6 3.5129 1.0352 -1.8848 6 1 2.6206 0.7543 -2.4245 7 6 4.7367 1.0169 -2.5195 8 7 5.8234 1.3595 -1.8625 9 14 4.8518 0.5043 -4.3121 10 1 3.4969 0.1687 -4.8188 11 1 5.4158 1.6216 -5.1112 12 1 5.7339 -0.6843 -4.4314 13 6 1.8538 2.0020 1.3228 14 6 1.8890 3.5023 1.1852 15 8 1.9478 4.0070 0.0898 16 6 1.8509 4.3727 2.4149 17 6 1.2087 5.7550 2.2823 18 6 1.8142 6.8969 3.1010 19 6 0.6536 6.1475 0.9116 20 6 0.4840 4.6440 3.0463 21 6 -0.7398 4.0113 2.3807 22 6 0.4203 4.7594 4.5706 23 1 -0.3634 -1.0276 0.0083 24 1 -0.3634 0.5210 0.8858 25 1 -0.3633 0.5066 -0.8941 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 3.7901 2.4675 -0.3273 29 1 4.0226 0.7746 0.1710 30 1 6.6843 1.3470 -2.3092 31 1 2.6619 1.6782 1.9786 32 1 0.8971 1.6984 1.7479 33 1 2.7049 4.2769 3.0854 34 1 2.2947 7.6095 2.4307 35 1 1.0261 7.3997 3.6615 36 1 2.5532 6.4949 3.7940 37 1 -0.2699 5.6002 0.7232 38 1 0.4511 7.2185 0.8947 39 1 1.3843 5.9037 0.1403 40 1 -0.7157 2.9315 2.5276 41 1 -1.6471 4.4186 2.8266 42 1 -0.7283 4.2332 1.3135 43 1 1.4318 4.7749 4.9764 44 1 -0.0951 5.6801 4.8441 45 1 -0.1213 3.9053 4.9774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707095012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:00 Heat of formation + Delta-G solvation = -14.113603 kcal Electronic energy + Delta-G solvation = -21641.937863 eV Core-core repulsion = 18660.455266 eV Total energy + Delta-G solvation = -2981.482597 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.32972 -37.76694 -36.14646 -32.57899 -31.19270 -30.28025 -29.06402 -28.70206 -27.48403 -26.16356 -25.15624 -22.36080 -22.00801 -19.79355 -18.52916 -17.73346 -16.40977 -15.86113 -15.34500 -14.96135 -14.70770 -14.46882 -14.09642 -13.69856 -13.45228 -13.29902 -12.92672 -12.64922 -12.49094 -12.35366 -12.24366 -12.19953 -12.00169 -11.90854 -11.77118 -11.55740 -11.38054 -11.14043 -10.98571 -10.62006 -10.61042 -10.49690 -10.12207 -9.79464 -9.64390 -9.54628 -9.15635 -8.56503 -8.36981 -7.20439 -5.96051 -3.95711 2.55796 3.35574 3.42709 3.48025 3.60279 4.18894 4.49390 4.64373 4.68024 4.89043 5.00233 5.14812 5.20620 5.40175 5.46522 5.49526 5.59698 5.66759 5.68743 5.73772 5.76987 5.83557 5.88367 5.91218 5.92807 5.95734 6.00366 6.06736 6.10606 6.13322 6.15642 6.28289 6.33769 6.41955 6.69787 6.71994 6.79610 7.33402 7.35514 7.85764 8.15219 8.20291 8.29271 8.61240 9.11166 9.67386 11.15461 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022475 B = 0.005157 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.510509 B = 5427.852657 C = 6059.557012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 N -0.524 5.524 4 C 0.194 3.806 5 C -0.499 4.499 6 H 0.064 0.936 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.286 1.286 13 C 0.009 3.991 14 C 0.382 3.618 15 O -0.409 6.409 16 C -0.200 4.200 17 C -0.096 4.096 18 C -0.112 4.112 19 C -0.137 4.137 20 C -0.103 4.103 21 C -0.129 4.129 22 C -0.112 4.112 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.018 0.982 28 H 0.033 0.967 29 H -0.013 1.013 30 H 0.259 0.741 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.581 5.941 13.086 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 N -0.248 5.248 4 C 0.069 3.931 5 C -0.537 4.537 6 H 0.082 0.918 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.725 3.275 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.120 4.120 14 C 0.253 3.747 15 O -0.278 6.278 16 C -0.219 4.219 17 C -0.096 4.096 18 C -0.169 4.169 19 C -0.193 4.193 20 C -0.103 4.103 21 C -0.186 4.186 22 C -0.169 4.169 23 H 0.067 0.933 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.005 0.995 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.142 0.858 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.636 6.497 12.107 18.005 hybrid contribution 0.890 -0.798 -0.119 1.201 sum -10.746 5.700 11.988 17.079 Atomic orbital electron populations 1.21805 0.96666 1.00106 1.01547 1.21998 0.94157 0.90048 1.01077 1.61978 1.25304 1.16377 1.21172 1.19765 0.80727 0.96934 0.95655 1.21153 0.93092 1.43812 0.95691 0.91824 1.24977 0.95719 0.95737 0.98256 1.69975 0.98425 1.49117 1.36550 0.86456 0.78023 0.78011 0.85030 1.19653 1.21054 1.21203 1.22421 1.01741 0.93988 0.93863 1.23669 0.71911 0.90870 0.88203 1.90352 1.32471 1.76023 1.28968 1.23244 0.98138 0.99586 1.00922 1.21673 1.01171 0.89236 0.97501 1.21332 0.99918 0.96717 0.98968 1.21763 1.02218 1.00266 0.95069 1.21707 0.91909 1.01909 0.94808 1.21543 0.95572 1.00318 1.01175 1.21316 1.01960 1.01720 0.91946 0.93349 0.93916 0.92173 0.89336 0.96396 0.94850 0.99517 0.93105 0.92871 0.89082 0.85847 0.92023 0.92224 0.92513 0.91940 0.93025 0.89075 0.91923 0.92001 0.91110 0.92315 0.92133 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 10.02 37.16 0.37 -1.88 16 2 C 0.06 1.08 5.51 -3.82 -0.02 1.06 16 3 N -0.52 -11.59 3.96 -237.52 -0.94 -12.53 16 4 C 0.19 5.25 4.36 -4.98 -0.02 5.23 16 5 C -0.50 -14.52 8.25 -34.45 -0.28 -14.80 16 6 H 0.06 1.84 7.30 -52.49 -0.38 1.46 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 9 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 10 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.01 0.16 5.24 -4.97 -0.03 0.14 16 14 C 0.38 6.92 5.02 -29.03 -0.15 6.77 16 15 O -0.41 -9.01 12.95 6.00 0.08 -8.93 16 16 C -0.20 -2.81 5.39 -91.77 -0.50 -3.30 16 17 C -0.10 -1.22 2.70 -154.47 -0.42 -1.64 16 18 C -0.11 -1.18 8.78 37.16 0.33 -0.85 16 19 C -0.14 -1.91 8.60 37.16 0.32 -1.60 16 20 C -0.10 -1.18 2.70 -154.47 -0.42 -1.60 16 21 C -0.13 -1.46 8.54 37.16 0.32 -1.14 16 22 C -0.11 -1.01 8.88 37.16 0.33 -0.68 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.04 0.60 6.68 -51.93 -0.35 0.25 16 25 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.09 1.91 6.58 -51.93 -0.34 1.57 16 27 H 0.02 0.33 8.01 -51.93 -0.42 -0.09 16 28 H 0.03 0.99 6.90 -51.93 -0.36 0.63 16 29 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 30 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.05 0.94 7.99 -51.93 -0.42 0.53 16 32 H 0.09 1.39 5.56 -51.93 -0.29 1.10 16 33 H 0.12 1.60 7.96 -51.93 -0.41 1.19 16 34 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 35 H 0.06 0.54 8.03 -51.93 -0.42 0.12 16 36 H 0.06 0.56 7.78 -51.93 -0.40 0.15 16 37 H 0.06 0.86 5.21 -51.93 -0.27 0.59 16 38 H 0.05 0.62 7.97 -51.93 -0.41 0.21 16 39 H 0.09 1.56 5.81 -51.93 -0.30 1.26 16 40 H 0.06 0.68 7.29 -51.93 -0.38 0.30 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.92 5.17 -51.93 -0.27 0.66 16 43 H 0.06 0.50 7.78 -51.93 -0.40 0.10 16 44 H 0.06 0.49 8.03 -51.93 -0.42 0.07 16 45 H 0.06 0.49 8.09 -51.92 -0.42 0.07 16 LS Contribution 347.59 15.07 5.24 5.24 Total: -1.00 -32.25 347.59 -8.07 -40.32 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -7.90 Total: -1.74 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -0.26 Total: -12.82 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: -0.20 Total: -39.41 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.08 Total: -8.93 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.25 -8.07 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707095012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.204 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds