Wall clock time and date at job start Mon Mar 30 2020 06:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46902 * 109.46872 * 2 1 4 4 C 1.46902 * 110.99635 * 198.65011 * 3 2 1 5 5 C 1.50689 * 109.47550 * 66.04692 * 4 3 2 6 6 H 1.07999 * 120.00151 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00434 * 179.97438 * 5 4 3 8 8 N 1.31524 * 119.99717 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00560 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46655 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47182 * 120.00000 * 9 7 5 12 12 H 1.48498 * 109.47131 * 240.00531 * 9 7 5 13 13 C 1.46901 * 110.99712 * 74.69535 * 3 2 1 14 14 C 1.50702 * 109.46576 * 200.02704 * 13 3 2 15 15 O 1.20759 * 120.00646 * 4.90853 * 14 13 3 16 16 C 1.50706 * 119.99501 * 184.90985 * 14 13 3 17 17 C 1.52997 * 117.49795 * 209.78419 * 16 14 13 18 18 C 1.52998 * 117.50391 * 215.00377 * 17 16 14 19 19 C 1.53001 * 117.49881 * 0.03194 * 17 16 14 20 20 C 1.52992 * 117.49866 * 278.44806 * 16 14 13 21 21 C 1.52997 * 117.50035 * 359.97438 * 20 16 14 22 22 C 1.53000 * 117.49769 * 144.97699 * 20 16 14 23 23 H 1.09003 * 109.47211 * 180.46077 * 1 2 3 24 24 H 1.08999 * 109.47312 * 300.46505 * 1 2 3 25 25 H 1.09003 * 109.47163 * 60.46384 * 1 2 3 26 26 H 1.09006 * 109.47093 * 240.00232 * 2 1 3 27 27 H 1.08996 * 109.46978 * 119.99944 * 2 1 3 28 28 H 1.09002 * 109.46830 * 186.05130 * 4 3 2 29 29 H 1.09004 * 109.46927 * 306.04233 * 4 3 2 30 30 H 0.96996 * 119.99642 * 180.02562 * 8 7 5 31 31 H 1.08999 * 109.47054 * 80.02995 * 13 3 2 32 32 H 1.08994 * 109.47149 * 320.02451 * 13 3 2 33 33 H 1.09004 * 115.55055 * 64.12273 * 16 14 13 34 34 H 1.08994 * 109.47080 * 111.39091 * 18 17 16 35 35 H 1.08999 * 109.47181 * 231.39928 * 18 17 16 36 36 H 1.09000 * 109.46525 * 351.39699 * 18 17 16 37 37 H 1.08998 * 109.47517 * 73.53563 * 19 17 16 38 38 H 1.09002 * 109.47354 * 193.53689 * 19 17 16 39 39 H 1.09007 * 109.47119 * 313.53464 * 19 17 16 40 40 H 1.09002 * 109.47281 * 69.44313 * 21 20 16 41 41 H 1.08999 * 109.47173 * 189.44362 * 21 20 16 42 42 H 1.09002 * 109.46949 * 309.43803 * 21 20 16 43 43 H 1.09002 * 109.47202 * 8.60685 * 22 20 16 44 44 H 1.09002 * 109.47444 * 128.61077 * 22 20 16 45 45 H 1.09008 * 109.47111 * 248.60911 * 22 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4202 1.4482 -0.4386 5 6 3.5129 1.0352 -1.8848 6 1 2.6206 0.7543 -2.4245 7 6 4.7367 1.0169 -2.5195 8 7 5.8234 1.3595 -1.8625 9 14 4.8518 0.5043 -4.3121 10 1 3.4969 0.1687 -4.8188 11 1 5.4158 1.6216 -5.1112 12 1 5.7339 -0.6843 -4.4314 13 6 1.8538 2.0020 1.3228 14 6 1.8890 3.5023 1.1852 15 8 1.9478 4.0070 0.0898 16 6 1.8509 4.3727 2.4149 17 6 1.2087 5.7550 2.2823 18 6 1.8142 6.8969 3.1010 19 6 0.6536 6.1475 0.9116 20 6 0.4840 4.6440 3.0463 21 6 -0.7398 4.0113 2.3807 22 6 0.4203 4.7594 4.5706 23 1 -0.3634 -1.0276 0.0083 24 1 -0.3634 0.5210 0.8858 25 1 -0.3633 0.5066 -0.8941 26 1 1.8934 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 3.7901 2.4675 -0.3273 29 1 4.0226 0.7746 0.1710 30 1 6.6843 1.3470 -2.3092 31 1 2.6619 1.6782 1.9786 32 1 0.8971 1.6984 1.7479 33 1 2.7049 4.2769 3.0854 34 1 2.2947 7.6095 2.4307 35 1 1.0261 7.3997 3.6615 36 1 2.5532 6.4949 3.7940 37 1 -0.2699 5.6002 0.7232 38 1 0.4511 7.2185 0.8947 39 1 1.3843 5.9037 0.1403 40 1 -0.7157 2.9315 2.5276 41 1 -1.6471 4.4186 2.8266 42 1 -0.7283 4.2332 1.3135 43 1 1.4318 4.7749 4.9764 44 1 -0.0951 5.6801 4.8441 45 1 -0.1213 3.9053 4.9774 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707095012.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:59 Heat of formation + Delta-G solvation = -33.507464 kcal Electronic energy + Delta-G solvation = -21642.778844 eV Core-core repulsion = 18660.455266 eV Total energy + Delta-G solvation = -2982.323578 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.53473 -39.15650 -37.79184 -34.78715 -32.15392 -31.73895 -30.59790 -29.65295 -28.93162 -27.14390 -26.77726 -24.30984 -23.30225 -21.37902 -19.87532 -18.70489 -18.55318 -17.29054 -16.80140 -16.35841 -16.29145 -15.85839 -15.56928 -15.17000 -14.76666 -14.50203 -14.24721 -14.07361 -13.98856 -13.73253 -13.34425 -13.18937 -13.07684 -13.00928 -12.89371 -12.83728 -12.63595 -12.62695 -12.59118 -12.46761 -12.37673 -11.93208 -11.64105 -11.53696 -11.26914 -10.73926 -10.63677 -10.55800 -9.89603 -8.98556 -8.22588 -6.31377 1.16783 1.36328 1.38469 1.51778 2.37968 2.58314 2.90478 3.10268 3.45720 3.66580 3.72244 3.94341 4.15838 4.18948 4.20719 4.33002 4.41284 4.54202 4.58777 4.62481 4.70388 4.75932 4.81214 4.84344 4.91875 4.97698 5.01387 5.04246 5.06060 5.11358 5.13754 5.15964 5.21828 5.26751 5.32467 5.35428 5.44391 5.47290 5.63037 5.63605 6.05033 6.34461 6.55879 6.83747 6.90486 7.37349 8.89419 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.022475 B = 0.005157 C = 0.004620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.510509 B = 5427.852657 C = 6059.557012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.052 3.948 3 N -0.537 5.537 4 C 0.215 3.785 5 C -0.517 4.517 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.937 5.937 9 Si 0.969 3.031 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.273 1.273 13 C 0.005 3.995 14 C 0.382 3.618 15 O -0.460 6.460 16 C -0.220 4.220 17 C -0.104 4.104 18 C -0.109 4.109 19 C -0.135 4.135 20 C -0.076 4.076 21 C -0.133 4.133 22 C -0.111 4.111 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.045 0.955 26 H 0.059 0.941 27 H 0.030 0.970 28 H -0.004 1.004 29 H -0.039 1.039 30 H 0.264 0.736 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.135 0.865 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.047 0.953 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.467 5.775 14.677 20.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.076 4.076 3 N -0.262 5.262 4 C 0.088 3.912 5 C -0.555 4.555 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.578 5.578 9 Si 0.794 3.206 10 H -0.188 1.188 11 H -0.207 1.207 12 H -0.198 1.198 13 C -0.123 4.123 14 C 0.257 3.743 15 O -0.333 6.333 16 C -0.239 4.239 17 C -0.104 4.104 18 C -0.166 4.166 19 C -0.191 4.191 20 C -0.076 4.076 21 C -0.190 4.190 22 C -0.168 4.168 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.048 0.952 28 H 0.014 0.986 29 H -0.021 1.021 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.095 0.905 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.546 6.318 13.727 20.294 hybrid contribution 1.449 -0.751 -0.573 1.730 sum -12.096 5.567 13.154 18.717 Atomic orbital electron populations 1.21708 0.93207 1.02134 1.01833 1.22068 0.96873 0.88357 1.00264 1.61874 1.21870 1.18367 1.24054 1.19307 0.83348 0.93723 0.94781 1.21449 0.93218 1.44023 0.96839 0.92242 1.25930 0.95220 0.95493 1.03218 1.70101 0.99069 1.49957 1.38658 0.85331 0.78470 0.77920 0.78892 1.18766 1.20651 1.19831 1.22611 1.03582 0.94220 0.91919 1.24180 0.69909 0.91280 0.88921 1.90354 1.34998 1.76729 1.31175 1.23195 1.00676 1.00263 0.99794 1.21813 1.01480 0.89653 0.97415 1.21344 1.00680 0.95787 0.98789 1.21675 1.01068 1.01315 0.95065 1.21868 0.89946 0.99376 0.96445 1.21602 0.96562 1.00926 0.99907 1.21372 1.02861 1.03187 0.89332 0.90475 0.91845 0.93575 0.92235 0.95153 0.98592 1.02140 0.92754 0.92456 0.85598 0.84744 0.92676 0.90035 0.91677 0.92096 0.91366 0.92922 0.91253 0.89600 0.93448 0.91778 0.90501 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.87 10.02 71.98 0.72 -3.15 16 2 C 0.05 2.02 5.51 86.30 0.48 2.50 16 3 N -0.54 -24.44 3.96 -905.37 -3.59 -28.02 16 4 C 0.21 12.23 4.36 85.55 0.37 12.60 16 5 C -0.52 -31.25 8.25 25.60 0.21 -31.04 16 6 H 0.06 3.56 7.30 -2.91 -0.02 3.54 16 7 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 8 N -0.94 -59.25 13.29 21.45 0.28 -58.96 16 9 Si 0.97 46.69 29.54 68.60 2.03 48.72 16 10 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 11 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 C 0.01 0.19 5.24 85.56 0.45 0.63 16 14 C 0.38 14.22 5.02 29.10 0.15 14.37 16 15 O -0.46 -21.51 12.95 -1.45 -0.02 -21.53 16 16 C -0.22 -6.05 5.39 -11.54 -0.06 -6.12 16 17 C -0.10 -2.53 2.70 -52.16 -0.14 -2.67 16 18 C -0.11 -2.07 8.78 71.98 0.63 -1.43 16 19 C -0.13 -3.84 8.60 71.98 0.62 -3.22 16 20 C -0.08 -1.55 2.70 -52.16 -0.14 -1.69 16 21 C -0.13 -2.69 8.54 71.98 0.61 -2.07 16 22 C -0.11 -1.54 8.88 71.98 0.64 -0.90 16 23 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.06 1.60 6.68 -2.39 -0.02 1.58 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.06 2.64 6.58 -2.38 -0.02 2.62 16 27 H 0.03 1.09 8.01 -2.39 -0.02 1.07 16 28 H 0.00 -0.26 6.90 -2.39 -0.02 -0.27 16 29 H -0.04 -2.35 8.12 -2.39 -0.02 -2.37 16 30 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 31 H 0.06 2.05 7.99 -2.39 -0.02 2.03 16 32 H 0.13 3.59 5.56 -2.39 -0.01 3.58 16 33 H 0.13 3.37 7.96 -2.39 -0.02 3.35 16 34 H 0.05 1.10 8.09 -2.39 -0.02 1.09 16 35 H 0.08 1.19 8.03 -2.39 -0.02 1.17 16 36 H 0.06 1.12 7.78 -2.39 -0.02 1.11 16 37 H 0.06 1.71 5.21 -2.39 -0.01 1.70 16 38 H 0.07 1.63 7.97 -2.39 -0.02 1.62 16 39 H 0.05 1.93 5.81 -2.38 -0.01 1.91 16 40 H 0.07 1.30 7.29 -2.39 -0.02 1.28 16 41 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.05 1.20 5.17 -2.39 -0.01 1.19 16 43 H 0.06 0.86 7.78 -2.39 -0.02 0.84 16 44 H 0.08 0.88 8.03 -2.39 -0.02 0.86 16 45 H 0.07 0.87 8.09 -2.38 -0.02 0.85 16 Total: -1.00 -74.03 347.59 4.65 -69.38 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.94 Total: 12.22 kcal Atomic # 6 Polarization: -26.80 SS G_CDS: 5.00 Total: -21.80 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -3.30 Total: -86.99 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.02 Total: -21.53 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -74.03 4.65 -69.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707095012.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.869 kcal (2) G-P(sol) polarization free energy of solvation -74.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds