Wall clock time and date at job start Mon Mar 30 2020 07:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46906 * 111.00271 * 2 1 4 4 C 1.53006 * 109.46407 * 71.24832 * 3 2 1 5 5 O 1.42904 * 109.47102 * 65.00297 * 4 3 2 6 6 C 1.42897 * 113.99719 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46801 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00165 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99677 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00251 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99908 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47394 * 59.99823 * 11 9 7 13 13 H 1.48498 * 109.47264 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47181 * 300.00340 * 11 9 7 15 15 C 1.46901 * 110.99655 * 236.05204 * 2 1 3 16 16 H 1.08999 * 110.45879 * 74.56887 * 15 2 1 17 17 C 1.55920 * 110.50630 * 311.97718 * 15 2 1 18 18 C 1.56264 * 105.86767 * 247.93310 * 17 15 2 19 19 C 1.51737 * 101.91492 * 25.25150 * 18 17 15 20 20 H 1.08999 * 110.89257 * 72.83462 * 19 18 17 21 21 C 1.51728 * 122.52208 * 206.95313 * 19 18 17 22 22 C 1.56246 * 101.92269 * 153.04135 * 21 19 18 23 23 C 1.55915 * 105.86684 * 334.75054 * 22 21 19 24 24 C 1.49976 * 104.08514 * 353.41914 * 23 22 21 25 25 H 1.08993 * 107.81240 * 281.48168 * 24 23 22 26 26 H 1.09001 * 109.47493 * 68.92026 * 1 2 3 27 27 H 1.08994 * 109.47738 * 188.91989 * 1 2 3 28 28 H 1.09000 * 109.47051 * 308.92358 * 1 2 3 29 29 H 1.08994 * 109.47060 * 311.25371 * 3 2 1 30 30 H 1.08995 * 109.46765 * 191.24571 * 3 2 1 31 31 H 1.09002 * 109.46480 * 184.99609 * 4 3 2 32 32 H 1.08991 * 109.47283 * 304.99688 * 4 3 2 33 33 H 1.09002 * 109.47178 * 299.99892 * 6 5 4 34 34 H 1.09001 * 109.47167 * 59.99523 * 6 5 4 35 35 H 0.97003 * 120.00474 * 179.97438 * 10 9 7 36 36 H 1.08994 * 110.17306 * 7.03080 * 17 15 2 37 37 H 1.09000 * 110.17272 * 128.83636 * 17 15 2 38 38 H 1.09000 * 110.93560 * 143.40756 * 18 17 15 39 39 H 1.09001 * 110.93858 * 267.05920 * 18 17 15 40 40 H 1.09007 * 110.93807 * 271.19849 * 21 19 18 41 41 H 1.09002 * 110.94451 * 34.84083 * 21 19 18 42 42 H 1.08996 * 110.17324 * 93.84697 * 22 21 19 43 43 H 1.09002 * 110.17023 * 215.57956 * 22 21 19 44 44 H 1.08997 * 110.50914 * 112.07110 * 23 22 21 45 45 H 1.08997 * 110.50890 * 234.76900 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.7453 2.0136 1.3660 5 8 2.4975 1.3199 2.3635 6 6 2.3345 1.8433 3.6831 7 6 3.1676 1.0401 4.6485 8 1 3.7617 0.2125 4.2902 9 6 3.1704 1.3613 5.9894 10 7 2.4457 2.3682 6.4259 11 14 4.2035 0.3663 7.1859 12 1 5.6335 0.4501 6.7939 13 1 4.0341 0.9101 8.5573 14 1 3.7650 -1.0523 7.1577 15 6 1.9953 -0.7659 -1.1377 16 1 1.8782 -0.2023 -2.0633 17 6 1.2791 -2.1467 -1.2448 18 6 2.3627 -3.2180 -0.8984 19 6 3.3256 -2.4225 -0.0368 20 1 2.8969 -2.2266 0.9460 21 6 4.7984 -2.7700 0.0747 22 6 5.4325 -1.3830 0.4144 23 6 4.4513 -0.3144 -0.1567 24 6 3.4356 -1.1183 -0.9125 25 1 3.8768 -1.3984 -1.8690 26 1 -0.3634 0.3696 -0.9589 27 1 -0.3634 -1.0151 0.1593 28 1 -0.3633 0.6457 0.7995 29 1 1.4931 1.9535 -0.7726 30 1 3.0666 1.3493 -0.2004 31 1 2.0551 3.0583 1.3385 32 1 0.6836 1.9557 1.6058 33 1 2.6568 2.8844 3.7034 34 1 1.2850 1.7822 3.9712 35 1 2.4474 2.5940 7.3693 36 1 0.4567 -2.1999 -0.5315 37 1 0.9090 -2.3006 -2.2584 38 1 1.9278 -4.0441 -0.3358 39 1 2.8548 -3.5803 -1.8011 40 1 4.9701 -3.4846 0.8798 41 1 5.1811 -3.1529 -0.8714 42 1 5.5272 -1.2674 1.4941 43 1 6.4092 -1.2899 -0.0603 44 1 3.9750 0.2383 0.6531 45 1 4.9759 0.3659 -0.8276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707941229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:24 Heat of formation + Delta-G solvation = -40.291605 kcal Electronic energy + Delta-G solvation = -21921.443848 eV Core-core repulsion = 18938.826088 eV Total energy + Delta-G solvation = -2982.617760 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.33647 -37.13636 -35.76700 -33.47480 -32.55999 -29.73299 -29.22081 -26.97919 -26.43770 -25.72707 -24.28524 -22.22289 -21.10537 -20.34813 -19.66037 -18.89712 -16.32435 -16.23094 -15.75307 -15.33417 -15.03183 -14.48846 -14.36826 -14.21978 -13.79609 -13.44507 -13.21201 -12.74701 -12.53313 -12.10630 -12.00708 -11.82334 -11.45683 -11.31901 -11.15759 -11.03002 -10.90582 -10.79197 -10.68325 -10.55837 -10.35914 -10.26007 -10.11548 -9.97979 -9.72809 -9.62618 -9.01068 -8.70954 -8.05479 -7.91353 -6.04099 -4.04596 3.36290 3.38692 3.42854 4.10040 4.31680 4.40828 4.75540 4.90629 5.00527 5.16154 5.28827 5.32435 5.37385 5.39325 5.44091 5.53611 5.64137 5.69633 5.74352 5.80561 5.83385 5.84892 5.92559 5.96705 6.01880 6.05561 6.09549 6.15492 6.19219 6.25335 6.37753 6.41905 6.45727 6.50067 6.61527 6.82355 6.93930 7.19891 7.38021 7.43210 7.52595 7.87632 8.25085 8.70944 9.10312 9.59919 11.07611 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.005720 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.194424 B = 4894.158286 C = 5700.566751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.514 5.514 3 C 0.048 3.952 4 C 0.068 3.932 5 O -0.377 6.377 6 C 0.195 3.805 7 C -0.507 4.507 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.901 5.901 11 Si 0.905 3.095 12 H -0.275 1.275 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.097 3.903 16 H 0.035 0.965 17 C -0.124 4.124 18 C -0.107 4.107 19 C -0.102 4.102 20 H 0.095 0.905 21 C -0.111 4.111 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.095 4.095 25 H 0.055 0.945 26 H 0.017 0.983 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.092 0.908 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.000 1.000 34 H 0.001 0.999 35 H 0.263 0.737 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.104 0.896 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.700 -7.204 -16.880 18.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.238 5.238 3 C -0.080 4.080 4 C -0.010 4.010 5 O -0.296 6.296 6 C 0.121 3.879 7 C -0.546 4.546 8 H 0.084 0.916 9 C -0.145 4.145 10 N -0.541 5.541 11 Si 0.733 3.267 12 H -0.201 1.201 13 H -0.213 1.213 14 H -0.201 1.201 15 C -0.012 4.012 16 H 0.053 0.947 17 C -0.161 4.161 18 C -0.145 4.145 19 C -0.120 4.120 20 H 0.113 0.887 21 C -0.148 4.148 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.114 4.114 25 H 0.074 0.926 26 H 0.035 0.965 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.052 0.948 30 H 0.110 0.890 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.018 0.982 34 H 0.019 0.981 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.072 0.928 44 H 0.122 0.878 45 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.462 -7.493 -16.328 17.971 hybrid contribution -0.047 0.324 -0.002 0.327 sum -0.510 -7.169 -16.331 17.842 Atomic orbital electron populations 1.22496 0.88312 1.02354 0.99680 1.61920 1.06837 1.13380 1.41671 1.22427 1.01758 0.88091 0.95697 1.22237 0.95442 0.94221 0.89078 1.87916 1.67383 1.56853 1.17482 1.20141 0.95992 0.93873 0.77905 1.21013 1.26908 1.15342 0.91313 0.91595 1.24931 0.96004 0.95493 0.98109 1.69954 1.40564 1.28225 1.15315 0.86443 0.80593 0.80219 0.79494 1.20071 1.21264 1.20053 1.21569 0.94572 0.93821 0.91204 0.94733 1.23202 0.98754 0.93123 1.01054 1.21905 0.96559 0.97011 0.99001 1.22335 0.94337 0.95350 1.00028 0.88662 1.21936 0.95220 0.97094 1.00562 1.22856 0.97648 0.93604 1.01558 1.21692 0.95702 0.97490 1.00758 1.21487 0.93581 0.97868 0.98426 0.92617 0.96495 0.91128 0.91158 0.94802 0.88969 0.94618 0.94733 0.98180 0.98076 0.92748 0.90107 0.92244 0.91939 0.92175 0.92080 0.92379 0.91119 0.92757 0.87769 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 8.89 60.06 0.53 0.80 16 2 N -0.51 -7.76 4.39 -234.82 -1.03 -8.79 16 3 C 0.05 0.74 4.52 -3.82 -0.02 0.72 16 4 C 0.07 1.29 6.08 37.16 0.23 1.52 16 5 O -0.38 -9.05 9.47 -35.23 -0.33 -9.38 16 6 C 0.20 5.41 5.69 36.01 0.20 5.62 16 7 C -0.51 -15.05 9.43 -34.44 -0.32 -15.37 16 8 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 11 Si 0.91 22.16 29.54 -169.99 -5.02 17.14 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 15 C 0.10 1.26 2.58 -67.65 -0.17 1.09 16 16 H 0.03 0.43 8.10 -51.93 -0.42 0.01 16 17 C -0.12 -1.41 6.26 -23.42 -0.15 -1.55 16 18 C -0.11 -1.22 6.62 -25.62 -0.17 -1.39 16 19 C -0.10 -1.38 2.96 -89.47 -0.27 -1.65 16 20 H 0.10 1.60 8.14 -51.93 -0.42 1.18 16 21 C -0.11 -1.41 6.61 -25.63 -0.17 -1.58 16 22 C -0.12 -1.67 6.94 -23.43 -0.16 -1.83 16 23 C -0.12 -1.76 4.97 -26.67 -0.13 -1.89 16 24 C -0.09 -1.26 2.20 -91.18 -0.20 -1.46 16 25 H 0.06 0.69 8.01 -51.93 -0.42 0.28 16 26 H 0.02 0.20 8.13 -51.93 -0.42 -0.22 16 27 H 0.07 0.88 5.87 -51.93 -0.30 0.58 16 28 H 0.07 1.01 6.31 -51.93 -0.33 0.69 16 29 H 0.03 0.46 8.06 -51.93 -0.42 0.04 16 30 H 0.09 1.44 4.73 -51.93 -0.25 1.20 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.03 0.64 6.42 -51.93 -0.33 0.31 16 33 H 0.00 0.01 8.14 -51.93 -0.42 -0.41 16 34 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.08 0.95 5.42 -51.93 -0.28 0.67 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.10 1.88 5.12 -51.93 -0.27 1.62 16 45 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -30.52 337.20 -9.52 -40.04 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -8.05 Total: -2.05 kcal Atomic # 6 Polarization: -14.58 SS G_CDS: -0.89 Total: -15.47 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.29 Total: -35.35 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: -0.33 Total: -9.38 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.52 -9.52 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707941229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.252 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds