Wall clock time and date at job start Mon Mar 30 2020 07:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46906 * 111.00271 * 2 1 4 4 C 1.53006 * 109.46407 * 71.24832 * 3 2 1 5 5 O 1.42904 * 109.47102 * 65.00297 * 4 3 2 6 6 C 1.42897 * 113.99719 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.46801 * 179.97438 * 6 5 4 8 8 H 1.07993 * 120.00165 * 359.97438 * 7 6 5 9 9 C 1.37881 * 119.99677 * 180.02562 * 7 6 5 10 10 N 1.31509 * 120.00251 * 0.02562 * 9 7 6 11 11 Si 1.86796 * 119.99908 * 180.02562 * 9 7 6 12 12 H 1.48507 * 109.47394 * 59.99823 * 11 9 7 13 13 H 1.48498 * 109.47264 * 179.97438 * 11 9 7 14 14 H 1.48504 * 109.47181 * 300.00340 * 11 9 7 15 15 C 1.46901 * 110.99655 * 236.05204 * 2 1 3 16 16 H 1.08999 * 110.45879 * 74.56887 * 15 2 1 17 17 C 1.55920 * 110.50630 * 311.97718 * 15 2 1 18 18 C 1.56264 * 105.86767 * 247.93310 * 17 15 2 19 19 C 1.51737 * 101.91492 * 25.25150 * 18 17 15 20 20 H 1.08999 * 110.89257 * 72.83462 * 19 18 17 21 21 C 1.51728 * 122.52208 * 206.95313 * 19 18 17 22 22 C 1.56246 * 101.92269 * 153.04135 * 21 19 18 23 23 C 1.55915 * 105.86684 * 334.75054 * 22 21 19 24 24 C 1.49976 * 104.08514 * 353.41914 * 23 22 21 25 25 H 1.08993 * 107.81240 * 281.48168 * 24 23 22 26 26 H 1.09001 * 109.47493 * 68.92026 * 1 2 3 27 27 H 1.08994 * 109.47738 * 188.91989 * 1 2 3 28 28 H 1.09000 * 109.47051 * 308.92358 * 1 2 3 29 29 H 1.08994 * 109.47060 * 311.25371 * 3 2 1 30 30 H 1.08995 * 109.46765 * 191.24571 * 3 2 1 31 31 H 1.09002 * 109.46480 * 184.99609 * 4 3 2 32 32 H 1.08991 * 109.47283 * 304.99688 * 4 3 2 33 33 H 1.09002 * 109.47178 * 299.99892 * 6 5 4 34 34 H 1.09001 * 109.47167 * 59.99523 * 6 5 4 35 35 H 0.97003 * 120.00474 * 179.97438 * 10 9 7 36 36 H 1.08994 * 110.17306 * 7.03080 * 17 15 2 37 37 H 1.09000 * 110.17272 * 128.83636 * 17 15 2 38 38 H 1.09000 * 110.93560 * 143.40756 * 18 17 15 39 39 H 1.09001 * 110.93858 * 267.05920 * 18 17 15 40 40 H 1.09007 * 110.93807 * 271.19849 * 21 19 18 41 41 H 1.09002 * 110.94451 * 34.84083 * 21 19 18 42 42 H 1.08996 * 110.17324 * 93.84697 * 22 21 19 43 43 H 1.09002 * 110.17023 * 215.57956 * 22 21 19 44 44 H 1.08997 * 110.50914 * 112.07110 * 23 22 21 45 45 H 1.08997 * 110.50890 * 234.76900 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.7453 2.0136 1.3660 5 8 2.4975 1.3199 2.3635 6 6 2.3345 1.8433 3.6831 7 6 3.1676 1.0401 4.6485 8 1 3.7617 0.2125 4.2902 9 6 3.1704 1.3613 5.9894 10 7 2.4457 2.3682 6.4259 11 14 4.2035 0.3663 7.1859 12 1 5.6335 0.4501 6.7939 13 1 4.0341 0.9101 8.5573 14 1 3.7650 -1.0523 7.1577 15 6 1.9953 -0.7659 -1.1377 16 1 1.8782 -0.2023 -2.0633 17 6 1.2791 -2.1467 -1.2448 18 6 2.3627 -3.2180 -0.8984 19 6 3.3256 -2.4225 -0.0368 20 1 2.8969 -2.2266 0.9460 21 6 4.7984 -2.7700 0.0747 22 6 5.4325 -1.3830 0.4144 23 6 4.4513 -0.3144 -0.1567 24 6 3.4356 -1.1183 -0.9125 25 1 3.8768 -1.3984 -1.8690 26 1 -0.3634 0.3696 -0.9589 27 1 -0.3634 -1.0151 0.1593 28 1 -0.3633 0.6457 0.7995 29 1 1.4931 1.9535 -0.7726 30 1 3.0666 1.3493 -0.2004 31 1 2.0551 3.0583 1.3385 32 1 0.6836 1.9557 1.6058 33 1 2.6568 2.8844 3.7034 34 1 1.2850 1.7822 3.9712 35 1 2.4474 2.5940 7.3693 36 1 0.4567 -2.1999 -0.5315 37 1 0.9090 -2.3006 -2.2584 38 1 1.9278 -4.0441 -0.3358 39 1 2.8548 -3.5803 -1.8011 40 1 4.9701 -3.4846 0.8798 41 1 5.1811 -3.1529 -0.8714 42 1 5.5272 -1.2674 1.4941 43 1 6.4092 -1.2899 -0.0603 44 1 3.9750 0.2383 0.6531 45 1 4.9759 0.3659 -0.8276 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707941229.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:24 Heat of formation + Delta-G solvation = -58.626896 kcal Electronic energy + Delta-G solvation = -21922.238926 eV Core-core repulsion = 18938.826088 eV Total energy + Delta-G solvation = -2983.412838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.39175 -38.73287 -37.20217 -34.98048 -34.38393 -30.95800 -30.57416 -28.91379 -27.62976 -26.77940 -25.51719 -24.43382 -22.37490 -21.43323 -20.73812 -19.96383 -18.58290 -17.54960 -17.17829 -16.87462 -16.30773 -16.11497 -15.85063 -15.40691 -15.26510 -14.77670 -14.55699 -14.18597 -13.71082 -13.58034 -13.37582 -13.09898 -13.02896 -12.75810 -12.68108 -12.49333 -12.40806 -12.14554 -12.10638 -11.92402 -11.62693 -11.54537 -11.30403 -11.26785 -11.12067 -10.88261 -10.77882 -10.75796 -10.12396 -9.01267 -8.30262 -6.41446 1.38378 1.43251 1.51518 2.35160 2.99505 3.03302 3.26343 3.30706 3.76933 3.92807 4.13544 4.20841 4.23738 4.32188 4.39522 4.41789 4.47363 4.54922 4.59906 4.65764 4.72933 4.75945 4.78464 4.81180 4.86365 4.94136 4.96783 4.99455 5.06787 5.09990 5.13765 5.21779 5.27424 5.32400 5.41544 5.41878 5.55484 5.57268 5.69644 5.77978 6.00428 6.23941 6.37790 6.60185 6.90036 7.30575 8.82023 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.018199 B = 0.005720 C = 0.004911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.194424 B = 4894.158286 C = 5700.566751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.540 5.540 3 C 0.058 3.942 4 C 0.060 3.940 5 O -0.386 6.386 6 C 0.211 3.789 7 C -0.540 4.540 8 H 0.059 0.941 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.978 3.022 12 H -0.265 1.265 13 H -0.274 1.274 14 H -0.267 1.267 15 C 0.095 3.905 16 H 0.049 0.951 17 C -0.119 4.119 18 C -0.101 4.101 19 C -0.103 4.103 20 H 0.051 0.949 21 C -0.105 4.105 22 C -0.122 4.122 23 C -0.119 4.119 24 C -0.094 4.094 25 H 0.076 0.924 26 H 0.038 0.962 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.041 0.959 32 H 0.034 0.966 33 H -0.019 1.019 34 H -0.022 1.022 35 H 0.270 0.730 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.174 -8.674 -18.635 20.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.265 5.265 3 C -0.069 4.069 4 C -0.018 4.018 5 O -0.306 6.306 6 C 0.136 3.864 7 C -0.577 4.577 8 H 0.077 0.923 9 C -0.192 4.192 10 N -0.571 5.571 11 Si 0.801 3.199 12 H -0.190 1.190 13 H -0.199 1.199 14 H -0.192 1.192 15 C -0.013 4.013 16 H 0.067 0.933 17 C -0.157 4.157 18 C -0.139 4.139 19 C -0.121 4.121 20 H 0.070 0.930 21 C -0.142 4.142 22 C -0.160 4.160 23 C -0.157 4.157 24 C -0.113 4.113 25 H 0.095 0.905 26 H 0.057 0.943 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.053 0.947 33 H -0.001 1.001 34 H -0.004 1.004 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.091 0.909 44 H 0.084 0.916 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.051 -8.960 -18.106 20.201 hybrid contribution -0.247 0.843 0.509 1.015 sum -0.196 -8.117 -17.596 19.379 Atomic orbital electron populations 1.22470 0.87465 1.02555 1.00096 1.61844 1.07849 1.13196 1.43568 1.22287 1.02069 0.88900 0.93680 1.22564 0.94855 0.94712 0.89644 1.87902 1.68416 1.57508 1.16734 1.19736 0.94147 0.92682 0.79819 1.21306 1.27913 1.15896 0.92618 0.92304 1.25918 0.96972 0.96466 0.99804 1.70064 1.41478 1.29434 1.16168 0.85309 0.78914 0.78636 0.77019 1.19005 1.19865 1.19204 1.21678 0.94327 0.94549 0.90755 0.93343 1.23193 0.98288 0.91936 1.02270 1.21899 0.95924 0.96744 0.99286 1.22244 0.95009 0.96521 0.98374 0.93038 1.21918 0.94577 0.96050 1.01660 1.22868 0.98738 0.94602 0.99772 1.21622 0.96365 0.97753 0.99925 1.21513 0.93745 0.97156 0.98867 0.90545 0.94335 0.90419 0.93026 0.92071 0.89217 0.94093 0.94740 1.00145 1.00406 0.92148 0.90934 0.89764 0.91772 0.90008 0.92421 0.89842 0.94181 0.90884 0.91643 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 8.89 127.69 1.14 1.70 16 2 N -0.54 -16.00 4.39 -896.82 -3.94 -19.94 16 3 C 0.06 1.78 4.52 86.30 0.39 2.17 16 4 C 0.06 2.32 6.08 71.98 0.44 2.76 16 5 O -0.39 -19.49 9.47 -148.98 -1.41 -20.90 16 6 C 0.21 12.33 5.69 71.24 0.41 12.74 16 7 C -0.54 -33.17 9.43 25.60 0.24 -32.93 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 9 C 0.01 0.39 5.46 84.66 0.46 0.85 16 10 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 11 Si 0.98 45.70 29.54 68.60 2.03 47.73 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 13 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 C 0.09 2.26 2.58 44.95 0.12 2.38 16 16 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 17 C -0.12 -2.39 6.26 32.74 0.20 -2.19 16 18 C -0.10 -2.04 6.62 31.31 0.21 -1.83 16 19 C -0.10 -2.70 2.96 -10.05 -0.03 -2.73 16 20 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 21 C -0.10 -2.53 6.61 31.30 0.21 -2.32 16 22 C -0.12 -3.42 6.94 32.73 0.23 -3.19 16 23 C -0.12 -3.49 4.97 30.63 0.15 -3.34 16 24 C -0.09 -2.34 2.20 -11.16 -0.02 -2.37 16 25 H 0.08 1.63 8.01 -2.39 -0.02 1.61 16 26 H 0.04 0.82 8.13 -2.39 -0.02 0.80 16 27 H 0.08 1.88 5.87 -2.39 -0.01 1.86 16 28 H 0.05 1.50 6.31 -2.39 -0.02 1.49 16 29 H 0.06 1.54 8.06 -2.39 -0.02 1.52 16 30 H 0.09 2.80 4.73 -2.39 -0.01 2.79 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.03 1.34 6.42 -2.39 -0.02 1.32 16 33 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 34 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 35 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.07 1.58 5.42 -2.39 -0.01 1.57 16 37 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 44 H 0.06 2.45 5.12 -2.39 -0.01 2.44 16 45 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -67.72 337.20 2.03 -65.69 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.94 Total: 12.86 kcal Atomic # 6 Polarization: -32.42 SS G_CDS: 4.13 Total: -28.28 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -3.65 Total: -77.10 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -1.41 Total: -20.90 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -67.72 2.03 -65.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707941229.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.067 kcal (2) G-P(sol) polarization free energy of solvation -67.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds