Wall clock time and date at job start Mon Mar 30 2020 07:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99658 * 2 1 4 4 C 1.53002 * 109.47138 * 287.24659 * 3 2 1 5 5 O 1.42896 * 109.46787 * 65.28368 * 4 3 2 6 6 C 1.42900 * 113.99836 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47010 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00303 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99700 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00608 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99772 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47217 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47085 * 120.00156 * 11 9 7 14 14 H 1.48500 * 109.47244 * 239.99897 * 11 9 7 15 15 C 1.46896 * 110.99924 * 123.95234 * 2 1 3 16 16 H 1.09000 * 110.11322 * 302.44351 * 15 2 1 17 17 C 1.53547 * 110.08744 * 180.89095 * 15 2 1 18 18 C 1.53380 * 107.25487 * 223.39473 * 17 15 2 19 19 C 1.53793 * 107.62380 * 0.95355 * 18 17 15 20 20 H 1.09000 * 111.82975 * 252.64672 * 19 18 17 21 21 C 1.54150 * 108.36595 * 128.93145 * 19 18 17 22 22 C 1.54218 * 106.78110 * 248.50544 * 21 19 18 23 23 C 1.54961 * 104.25397 * 22.69964 * 22 21 19 24 24 C 1.53446 * 110.08499 * 63.99462 * 15 2 1 25 25 H 1.09003 * 112.72343 * 268.84735 * 24 15 2 26 26 H 1.08996 * 109.47016 * 303.23800 * 1 2 3 27 27 H 1.09001 * 109.47088 * 63.23436 * 1 2 3 28 28 H 1.09000 * 109.47083 * 183.23194 * 1 2 3 29 29 H 1.08991 * 109.47752 * 47.25028 * 3 2 1 30 30 H 1.09007 * 109.46827 * 167.25387 * 3 2 1 31 31 H 1.09002 * 109.47000 * 185.28322 * 4 3 2 32 32 H 1.08998 * 109.47000 * 305.28623 * 4 3 2 33 33 H 1.08999 * 109.47532 * 300.00030 * 6 5 4 34 34 H 1.09006 * 109.47246 * 60.00072 * 6 5 4 35 35 H 0.96993 * 120.00589 * 180.02562 * 10 9 7 36 36 H 1.08994 * 109.88299 * 103.97561 * 17 15 2 37 37 H 1.08998 * 109.88027 * 342.80162 * 17 15 2 38 38 H 1.09001 * 109.82575 * 241.43199 * 18 17 15 39 39 H 1.08999 * 109.83075 * 120.47842 * 18 17 15 40 40 H 1.09002 * 109.99871 * 7.83289 * 21 19 18 41 41 H 1.08998 * 109.99986 * 129.12668 * 21 19 18 42 42 H 1.08997 * 110.47808 * 141.39697 * 22 21 19 43 43 H 1.09005 * 110.47189 * 263.88181 * 22 21 19 44 44 H 1.08998 * 110.79966 * 80.05592 * 23 22 21 45 45 H 1.08996 * 110.80010 * 203.54627 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7789 2.0008 -1.3777 5 8 0.3780 2.1396 -1.6230 6 6 0.0647 2.7214 -2.8900 7 6 -1.4315 2.8189 -3.0418 8 1 -2.0785 2.4717 -2.2497 9 6 -1.9745 3.3513 -4.1919 10 7 -1.1868 3.7736 -5.1567 11 14 -3.8291 3.4728 -4.3798 12 1 -4.4863 2.9339 -3.1621 13 1 -4.2160 4.8948 -4.5623 14 1 -4.2593 2.6868 -5.5640 15 6 1.9955 -0.7659 1.1376 16 1 1.6172 -0.3548 2.0735 17 6 3.5306 -0.7337 1.1299 18 6 4.0170 -2.1548 1.4406 19 6 2.7748 -3.0453 1.6110 20 1 2.6104 -3.3165 2.6538 21 6 2.9418 -4.2885 0.7149 22 6 1.8936 -4.1705 -0.4101 23 6 1.5765 -2.6552 -0.4788 24 6 1.5944 -2.2416 1.0101 25 1 0.6506 -2.4658 1.5071 26 1 -0.3633 0.5633 0.8595 27 1 -0.3633 0.4628 -0.9176 28 1 -0.3633 -1.0260 0.0579 29 1 1.4745 1.9606 0.7545 30 1 3.0615 1.3514 0.2268 31 1 2.2519 2.9824 -1.4071 32 1 2.2201 1.3617 -2.1425 33 1 0.5020 3.7179 -2.9505 34 1 0.4704 2.0976 -3.6866 35 1 -1.5688 4.1484 -5.9656 36 1 3.8907 -0.0434 1.8926 37 1 3.8899 -0.4252 0.1482 38 1 4.5997 -2.1529 2.3618 39 1 4.6272 -2.5251 0.6168 40 1 3.9450 -4.3090 0.2890 41 1 2.7655 -5.1935 1.2963 42 1 2.3093 -4.5164 -1.3564 43 1 0.9980 -4.7384 -0.1578 44 1 2.3467 -2.1236 -1.0375 45 1 0.5926 -2.4851 -0.9159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707941231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:28 Heat of formation + Delta-G solvation = -60.598501 kcal Electronic energy + Delta-G solvation = -21419.484272 eV Core-core repulsion = 18435.985939 eV Total energy + Delta-G solvation = -2983.498333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.19915 -37.33302 -35.65409 -33.08651 -32.63839 -30.37801 -28.61557 -27.57423 -26.75016 -25.96358 -23.49309 -22.22676 -21.44473 -20.70651 -19.42780 -18.75627 -16.62217 -16.34190 -15.96941 -15.40810 -14.97794 -14.91479 -14.26035 -14.16596 -13.60906 -13.53352 -13.38730 -13.01504 -12.52232 -12.09992 -11.84731 -11.75130 -11.40150 -11.35223 -11.12620 -11.06337 -10.83427 -10.78179 -10.72008 -10.66491 -10.57588 -10.45371 -10.38430 -10.31410 -10.10379 -9.83909 -9.04149 -8.75554 -8.11456 -7.90819 -6.08844 -4.10302 3.30004 3.36611 3.42642 4.12835 4.36788 4.41886 4.45345 4.69937 4.99252 5.11869 5.14412 5.21591 5.27841 5.35707 5.45500 5.50135 5.50586 5.61463 5.67580 5.75862 5.77363 5.84112 5.93618 5.96394 5.96666 6.02587 6.03498 6.06959 6.13525 6.17517 6.25438 6.30812 6.37194 6.44556 6.47937 6.65366 6.96186 7.17642 7.43098 7.48894 7.54664 7.81501 8.18947 8.62236 9.03853 9.54657 11.02749 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.003974 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.529417 B = 7043.661665 C = 7496.748497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.523 5.523 3 C 0.056 3.944 4 C 0.068 3.932 5 O -0.391 6.391 6 C 0.194 3.806 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.905 3.095 12 H -0.271 1.271 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.084 3.916 16 H 0.035 0.965 17 C -0.119 4.119 18 C -0.113 4.113 19 C -0.093 4.093 20 H 0.074 0.926 21 C -0.118 4.118 22 C -0.131 4.131 23 C -0.097 4.097 24 C -0.082 4.082 25 H 0.073 0.927 26 H 0.015 0.985 27 H 0.109 0.891 28 H 0.055 0.945 29 H 0.036 0.964 30 H 0.078 0.922 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.002 0.998 34 H 0.005 0.995 35 H 0.263 0.737 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.900 -13.201 13.085 21.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.247 5.247 3 C -0.072 4.072 4 C -0.010 4.010 5 O -0.311 6.311 6 C 0.120 3.880 7 C -0.550 4.550 8 H 0.084 0.916 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.733 3.267 12 H -0.195 1.195 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.024 4.024 16 H 0.053 0.947 17 C -0.157 4.157 18 C -0.151 4.151 19 C -0.111 4.111 20 H 0.092 0.908 21 C -0.155 4.155 22 C -0.168 4.168 23 C -0.135 4.135 24 C -0.101 4.101 25 H 0.092 0.908 26 H 0.033 0.967 27 H 0.127 0.873 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.020 0.980 34 H 0.023 0.977 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.098 0.902 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.914 -13.394 12.602 20.892 hybrid contribution -0.978 0.686 0.386 1.256 sum 8.936 -12.708 12.988 20.249 Atomic orbital electron populations 1.22735 0.86137 1.00519 1.03596 1.62193 1.09052 1.12785 1.40656 1.22220 0.99331 0.88652 0.96993 1.22253 0.85819 0.97443 0.95503 1.87824 1.19898 1.83104 1.40243 1.20177 0.96361 0.91859 0.79637 1.21091 0.90900 1.40599 1.02432 0.91615 1.24942 0.98808 0.95309 0.95429 1.69970 1.34933 1.41819 1.07048 0.86321 0.84540 0.77701 0.78163 1.19518 1.20920 1.20858 1.22037 0.94441 0.93889 0.92072 0.94696 1.22039 0.94817 0.96755 1.02057 1.22106 0.97081 0.94905 1.01005 1.22349 0.95056 0.95081 0.98662 0.90756 1.22357 0.99427 0.97134 0.96620 1.22456 0.98377 0.97928 0.98067 1.22301 1.02614 0.93340 0.95209 1.22388 0.97313 0.93194 0.97214 0.90829 0.96671 0.87252 0.92619 0.94552 0.90359 0.94481 0.93707 0.97986 0.97693 0.92762 0.92370 0.90470 0.92482 0.91596 0.91841 0.92638 0.92074 0.92253 0.90237 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 8.62 60.07 0.52 0.81 16 2 N -0.52 -7.90 3.40 -234.27 -0.80 -8.69 16 3 C 0.06 0.87 5.28 -3.82 -0.02 0.85 16 4 C 0.07 1.27 6.25 37.16 0.23 1.51 16 5 O -0.39 -9.20 7.28 -35.23 -0.26 -9.46 16 6 C 0.19 5.30 5.69 36.01 0.20 5.51 16 7 C -0.51 -14.98 9.43 -34.44 -0.32 -15.30 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 11 Si 0.91 21.87 29.54 -169.99 -5.02 16.85 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 15 C 0.08 1.05 2.34 -67.20 -0.16 0.90 16 16 H 0.04 0.46 8.14 -51.93 -0.42 0.03 16 17 C -0.12 -1.29 4.92 -26.25 -0.13 -1.41 16 18 C -0.11 -1.07 6.27 -26.12 -0.16 -1.23 16 19 C -0.09 -0.90 3.85 -88.59 -0.34 -1.24 16 20 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 21 C -0.12 -1.09 6.38 -25.49 -0.16 -1.25 16 22 C -0.13 -1.34 6.82 -25.06 -0.17 -1.51 16 23 C -0.10 -1.19 4.96 -24.89 -0.12 -1.31 16 24 C -0.08 -0.94 2.60 -88.56 -0.23 -1.18 16 25 H 0.07 0.85 8.04 -51.93 -0.42 0.43 16 26 H 0.01 0.25 8.04 -51.93 -0.42 -0.17 16 27 H 0.11 2.24 5.49 -51.93 -0.29 1.95 16 28 H 0.06 0.84 5.75 -51.93 -0.30 0.54 16 29 H 0.04 0.59 7.97 -51.93 -0.41 0.17 16 30 H 0.08 1.02 6.05 -51.92 -0.31 0.70 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 34 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.90 7.12 -51.93 -0.37 0.53 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.62 7.01 -51.93 -0.36 0.25 16 40 H 0.06 0.56 7.01 -51.93 -0.36 0.20 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.08 1.09 7.60 -51.93 -0.39 0.69 16 45 H 0.07 0.91 6.91 -51.93 -0.36 0.55 16 LS Contribution 336.38 15.07 5.07 5.07 Total: -1.00 -29.73 336.38 -9.43 -39.16 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -8.19 Total: -3.31 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.97 Total: -13.35 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.06 Total: -34.95 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.26 Total: -9.46 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.73 -9.43 -39.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707941231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.443 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds