Wall clock time and date at job start Mon Mar 30 2020 07:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46897 * 110.99658 * 2 1 4 4 C 1.53002 * 109.47138 * 287.24659 * 3 2 1 5 5 O 1.42896 * 109.46787 * 65.28368 * 4 3 2 6 6 C 1.42900 * 113.99836 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47010 * 179.97438 * 6 5 4 8 8 H 1.08001 * 120.00303 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99700 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00608 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 119.99772 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47217 * 0.02562 * 11 9 7 13 13 H 1.48502 * 109.47085 * 120.00156 * 11 9 7 14 14 H 1.48500 * 109.47244 * 239.99897 * 11 9 7 15 15 C 1.46896 * 110.99924 * 123.95234 * 2 1 3 16 16 H 1.09000 * 110.11322 * 302.44351 * 15 2 1 17 17 C 1.53547 * 110.08744 * 180.89095 * 15 2 1 18 18 C 1.53380 * 107.25487 * 223.39473 * 17 15 2 19 19 C 1.53793 * 107.62380 * 0.95355 * 18 17 15 20 20 H 1.09000 * 111.82975 * 252.64672 * 19 18 17 21 21 C 1.54150 * 108.36595 * 128.93145 * 19 18 17 22 22 C 1.54218 * 106.78110 * 248.50544 * 21 19 18 23 23 C 1.54961 * 104.25397 * 22.69964 * 22 21 19 24 24 C 1.53446 * 110.08499 * 63.99462 * 15 2 1 25 25 H 1.09003 * 112.72343 * 268.84735 * 24 15 2 26 26 H 1.08996 * 109.47016 * 303.23800 * 1 2 3 27 27 H 1.09001 * 109.47088 * 63.23436 * 1 2 3 28 28 H 1.09000 * 109.47083 * 183.23194 * 1 2 3 29 29 H 1.08991 * 109.47752 * 47.25028 * 3 2 1 30 30 H 1.09007 * 109.46827 * 167.25387 * 3 2 1 31 31 H 1.09002 * 109.47000 * 185.28322 * 4 3 2 32 32 H 1.08998 * 109.47000 * 305.28623 * 4 3 2 33 33 H 1.08999 * 109.47532 * 300.00030 * 6 5 4 34 34 H 1.09006 * 109.47246 * 60.00072 * 6 5 4 35 35 H 0.96993 * 120.00589 * 180.02562 * 10 9 7 36 36 H 1.08994 * 109.88299 * 103.97561 * 17 15 2 37 37 H 1.08998 * 109.88027 * 342.80162 * 17 15 2 38 38 H 1.09001 * 109.82575 * 241.43199 * 18 17 15 39 39 H 1.08999 * 109.83075 * 120.47842 * 18 17 15 40 40 H 1.09002 * 109.99871 * 7.83289 * 21 19 18 41 41 H 1.08998 * 109.99986 * 129.12668 * 21 19 18 42 42 H 1.08997 * 110.47808 * 141.39697 * 22 21 19 43 43 H 1.09005 * 110.47189 * 263.88181 * 22 21 19 44 44 H 1.08998 * 110.79966 * 80.05592 * 23 22 21 45 45 H 1.08996 * 110.80010 * 203.54627 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7789 2.0008 -1.3777 5 8 0.3780 2.1396 -1.6230 6 6 0.0647 2.7214 -2.8900 7 6 -1.4315 2.8189 -3.0418 8 1 -2.0785 2.4717 -2.2497 9 6 -1.9745 3.3513 -4.1919 10 7 -1.1868 3.7736 -5.1567 11 14 -3.8291 3.4728 -4.3798 12 1 -4.4863 2.9339 -3.1621 13 1 -4.2160 4.8948 -4.5623 14 1 -4.2593 2.6868 -5.5640 15 6 1.9955 -0.7659 1.1376 16 1 1.6172 -0.3548 2.0735 17 6 3.5306 -0.7337 1.1299 18 6 4.0170 -2.1548 1.4406 19 6 2.7748 -3.0453 1.6110 20 1 2.6104 -3.3165 2.6538 21 6 2.9418 -4.2885 0.7149 22 6 1.8936 -4.1705 -0.4101 23 6 1.5765 -2.6552 -0.4788 24 6 1.5944 -2.2416 1.0101 25 1 0.6506 -2.4658 1.5071 26 1 -0.3633 0.5633 0.8595 27 1 -0.3633 0.4628 -0.9176 28 1 -0.3633 -1.0260 0.0579 29 1 1.4745 1.9606 0.7545 30 1 3.0615 1.3514 0.2268 31 1 2.2519 2.9824 -1.4071 32 1 2.2201 1.3617 -2.1425 33 1 0.5020 3.7179 -2.9505 34 1 0.4704 2.0976 -3.6866 35 1 -1.5688 4.1484 -5.9656 36 1 3.8907 -0.0434 1.8926 37 1 3.8899 -0.4252 0.1482 38 1 4.5997 -2.1529 2.3618 39 1 4.6272 -2.5251 0.6168 40 1 3.9450 -4.3090 0.2890 41 1 2.7655 -5.1935 1.2963 42 1 2.3093 -4.5164 -1.3564 43 1 0.9980 -4.7384 -0.1578 44 1 2.3467 -2.1236 -1.0375 45 1 0.5926 -2.4851 -0.9159 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707941231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:45:27 Heat of formation + Delta-G solvation = -76.943805 kcal Electronic energy + Delta-G solvation = -21420.193057 eV Core-core repulsion = 18435.985939 eV Total energy + Delta-G solvation = -2984.207119 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 267.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14947 -38.90566 -37.08648 -34.89877 -33.92978 -31.64410 -29.88476 -29.12365 -28.12292 -27.07136 -24.82450 -24.29953 -22.73692 -21.56354 -20.39690 -19.68179 -18.62027 -17.58967 -17.44332 -16.91811 -16.57904 -16.16296 -15.89920 -15.13655 -15.06746 -14.91871 -14.49603 -14.27762 -13.85503 -13.49566 -13.32901 -13.08853 -13.02540 -12.80883 -12.55886 -12.49819 -12.27847 -12.17865 -11.97190 -11.76824 -11.58375 -11.49906 -11.43603 -11.41031 -11.19732 -11.17659 -10.93189 -10.82558 -10.13418 -9.16113 -8.31357 -6.43246 1.39548 1.40845 1.55375 2.34731 2.97254 3.02634 3.25214 3.56022 3.58773 3.84688 4.12678 4.27329 4.30233 4.37168 4.40756 4.46539 4.56040 4.57785 4.61840 4.63918 4.71511 4.73416 4.80823 4.86940 4.88531 4.95798 4.97695 5.05409 5.12219 5.16418 5.17593 5.20604 5.25711 5.33918 5.40722 5.47601 5.53815 5.56014 5.63002 5.66737 5.98181 6.16364 6.35082 6.56105 6.84838 7.28812 8.81322 Molecular weight = 267.19amu Principal moments of inertia in cm(-1) A = 0.029083 B = 0.003974 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.529417 B = 7043.661665 C = 7496.748497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.530 5.530 3 C 0.065 3.935 4 C 0.059 3.941 5 O -0.396 6.396 6 C 0.209 3.791 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.006 3.994 10 N -0.932 5.932 11 Si 0.981 3.019 12 H -0.264 1.264 13 H -0.272 1.272 14 H -0.272 1.272 15 C 0.083 3.917 16 H 0.035 0.965 17 C -0.117 4.117 18 C -0.110 4.110 19 C -0.088 4.088 20 H 0.088 0.912 21 C -0.114 4.114 22 C -0.128 4.128 23 C -0.097 4.097 24 C -0.084 4.084 25 H 0.072 0.928 26 H 0.012 0.988 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.110 0.890 31 H 0.045 0.955 32 H 0.040 0.960 33 H -0.018 1.018 34 H -0.018 1.018 35 H 0.270 0.730 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.104 -14.307 14.542 22.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.254 5.254 3 C -0.063 4.063 4 C -0.018 4.018 5 O -0.316 6.316 6 C 0.134 3.866 7 C -0.580 4.580 8 H 0.080 0.920 9 C -0.192 4.192 10 N -0.571 5.571 11 Si 0.804 3.196 12 H -0.188 1.188 13 H -0.197 1.197 14 H -0.197 1.197 15 C -0.025 4.025 16 H 0.053 0.947 17 C -0.155 4.155 18 C -0.147 4.147 19 C -0.107 4.107 20 H 0.106 0.894 21 C -0.151 4.151 22 C -0.166 4.166 23 C -0.135 4.135 24 C -0.103 4.103 25 H 0.091 0.909 26 H 0.030 0.970 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.050 0.950 30 H 0.128 0.872 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.000 1.000 34 H 0.000 1.000 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.142 -14.510 14.075 22.617 hybrid contribution -0.969 1.014 -0.066 1.404 sum 9.173 -13.496 14.010 21.507 Atomic orbital electron populations 1.22503 0.87448 1.00788 1.01217 1.62157 1.07948 1.12746 1.42516 1.22172 1.01152 0.88594 0.94333 1.22562 0.83362 0.98264 0.97588 1.87844 1.23008 1.82655 1.38099 1.19776 0.95696 0.90401 0.80707 1.21396 0.91787 1.41743 1.03078 0.92040 1.25945 1.04426 0.94209 0.94643 1.70078 1.37441 1.41955 1.07631 0.85161 0.77628 0.78258 0.78511 1.18808 1.19731 1.19730 1.22146 0.95723 0.93952 0.90706 0.94745 1.22034 0.93186 0.98270 1.01981 1.22097 0.97057 0.93635 1.01944 1.22351 0.94052 0.94930 0.99332 0.89397 1.22342 0.99193 0.97501 0.96112 1.22438 0.99098 0.96206 0.98851 1.22205 1.00775 0.94934 0.95546 1.22407 0.98312 0.92856 0.96694 0.90929 0.96991 0.91240 0.91301 0.95023 0.87210 0.93661 0.94144 1.00003 1.00040 0.92125 0.91056 0.91464 0.90748 0.91436 0.91256 0.91255 0.91977 0.91853 0.91945 0.93601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 8.62 127.69 1.10 2.07 16 2 N -0.53 -15.97 3.40 -895.08 -3.04 -19.01 16 3 C 0.07 1.99 5.28 86.30 0.46 2.45 16 4 C 0.06 2.29 6.25 71.98 0.45 2.74 16 5 O -0.40 -19.43 7.28 -148.98 -1.08 -20.51 16 6 C 0.21 11.98 5.69 71.24 0.41 12.38 16 7 C -0.54 -32.63 9.43 25.60 0.24 -32.39 16 8 H 0.06 3.66 7.81 -2.91 -0.02 3.63 16 9 C 0.01 0.35 5.46 84.65 0.46 0.82 16 10 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 11 Si 0.98 44.91 29.54 68.60 2.03 46.94 16 12 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 13 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 15 C 0.08 1.96 2.34 45.25 0.11 2.06 16 16 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 17 C -0.12 -2.26 4.92 30.91 0.15 -2.11 16 18 C -0.11 -1.75 6.27 30.99 0.19 -1.55 16 19 C -0.09 -1.47 3.85 -9.48 -0.04 -1.50 16 20 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 21 C -0.11 -1.80 6.38 31.40 0.20 -1.60 16 22 C -0.13 -2.47 6.82 31.68 0.22 -2.25 16 23 C -0.10 -2.35 4.96 31.79 0.16 -2.19 16 24 C -0.08 -1.81 2.60 -9.46 -0.02 -1.84 16 25 H 0.07 1.58 8.04 -2.39 -0.02 1.56 16 26 H 0.01 0.40 8.04 -2.39 -0.02 0.38 16 27 H 0.07 2.98 5.49 -2.39 -0.01 2.97 16 28 H 0.07 2.12 5.75 -2.39 -0.01 2.10 16 29 H 0.03 1.01 7.97 -2.39 -0.02 0.99 16 30 H 0.11 2.67 6.05 -2.38 -0.01 2.66 16 31 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 34 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 1.45 7.12 -2.39 -0.02 1.44 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.08 7.01 -2.39 -0.02 1.06 16 40 H 0.07 1.03 7.01 -2.39 -0.02 1.02 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.06 1.72 7.60 -2.39 -0.02 1.70 16 45 H 0.05 1.28 6.91 -2.39 -0.02 1.26 16 Total: -1.00 -65.02 336.38 3.19 -61.82 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.93 Total: 10.17 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: 4.08 Total: -22.92 kcal Atomic # 7 Polarization: -72.75 SS G_CDS: -2.76 Total: -75.50 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: -1.08 Total: -20.51 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.02 3.19 -61.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707941231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.119 kcal (2) G-P(sol) polarization free energy of solvation -65.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds